Wall clock time and date at job start Sat Apr 11 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47386 * 2 1 4 4 C 1.53004 * 109.47090 * 119.99879 * 2 1 3 5 5 C 1.53000 * 109.47367 * 185.00270 * 4 2 1 6 6 N 1.46498 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99769 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00299 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99635 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.53764 * 328.13856 * 9 7 6 11 11 C 1.53099 * 109.50611 * 88.24703 * 9 7 6 12 12 O 1.43020 * 109.25662 * 176.78326 * 11 9 7 13 13 C 1.43019 * 113.73374 * 301.32824 * 12 11 9 14 14 C 1.53098 * 109.25995 * 58.67705 * 13 12 11 15 15 N 1.47008 * 109.50533 * 208.03036 * 9 7 6 16 16 C 1.46906 * 111.00243 * 57.67110 * 15 9 7 17 17 C 1.54260 * 110.48856 * 187.59611 * 16 15 9 18 18 C 1.53872 * 106.59993 * 217.71274 * 17 16 15 19 19 C 1.54271 * 106.59990 * 0.02562 * 18 17 16 20 20 C 1.54887 * 110.48401 * 72.82035 * 16 15 9 21 21 N 1.46501 * 109.47428 * 239.99434 * 2 1 3 22 22 C 1.36937 * 119.99428 * 85.00091 * 21 2 1 23 23 H 1.07995 * 120.00450 * 0.02562 * 22 21 2 24 24 C 1.38819 * 119.99664 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99965 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00050 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.46849 * 90.00016 * 26 24 22 28 28 H 1.48501 * 109.47275 * 210.00353 * 26 24 22 29 29 H 1.48500 * 109.47097 * 330.00371 * 26 24 22 30 30 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47260 * 300.00146 * 1 2 3 32 32 H 1.08995 * 109.46853 * 60.00479 * 1 2 3 33 33 H 1.08996 * 109.47094 * 64.99799 * 4 2 1 34 34 H 1.09005 * 109.46850 * 305.00073 * 4 2 1 35 35 H 1.09001 * 109.47252 * 59.99282 * 5 4 2 36 36 H 1.09005 * 109.46974 * 299.99727 * 5 4 2 37 37 H 0.97000 * 119.99874 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.50750 * 56.85039 * 11 9 7 39 39 H 1.08997 * 109.50760 * 296.71376 * 11 9 7 40 40 H 1.08996 * 109.51094 * 298.73192 * 13 12 11 41 41 H 1.09000 * 109.50140 * 178.60006 * 13 12 11 42 42 H 1.08997 * 109.50822 * 183.21313 * 14 13 12 43 43 H 1.09001 * 109.51175 * 63.07464 * 14 13 12 44 44 H 1.08996 * 110.53598 * 310.21259 * 16 15 9 45 45 H 1.09004 * 110.03169 * 98.42798 * 17 16 15 46 46 H 1.09001 * 110.03402 * 337.00202 * 17 16 15 47 47 H 1.09002 * 110.03408 * 119.28554 * 18 17 16 48 48 H 1.09001 * 110.03618 * 240.71650 * 18 17 16 49 49 H 1.08992 * 110.48645 * 142.28822 * 19 18 17 50 50 H 1.09000 * 110.48683 * 264.93802 * 19 18 17 51 51 H 1.08999 * 110.75667 * 38.30988 * 20 16 15 52 52 H 1.09004 * 110.76005 * 274.93791 * 20 16 15 53 53 H 0.96999 * 120.00072 * 265.00474 * 21 2 1 54 54 H 0.96997 * 119.99735 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3739 -1.3385 2.7761 8 8 6.1583 -0.7993 2.0245 9 6 5.8761 -2.0479 4.0073 10 1 5.1333 -1.9701 4.8013 11 6 6.1241 -3.5232 3.6818 12 8 6.6710 -4.1744 4.8317 13 6 7.8978 -3.5994 5.2898 14 6 7.6677 -2.1249 5.6316 15 7 7.1347 -1.4308 4.4503 16 6 6.9527 0.0019 4.7190 17 6 8.3120 0.6759 4.9980 18 6 8.0680 1.7153 6.1061 19 6 6.5691 1.6362 6.4623 20 6 6.1498 0.2104 6.0270 21 7 2.0184 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3757 23 1 1.8927 1.0403 -2.4241 24 6 2.6115 -0.6622 -3.5092 25 7 2.7377 -0.0055 -4.6429 26 14 3.0558 -2.4747 -3.4252 27 1 1.8584 -3.2931 -3.7440 28 1 4.1309 -2.7668 -4.4071 29 1 3.5313 -2.8049 -2.0577 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2617 2.1370 35 1 3.8532 0.4370 1.3574 36 1 3.9995 -1.0728 0.4261 37 1 3.4256 -1.7342 3.1116 38 1 6.8264 -3.5998 2.8517 39 1 5.1824 -3.9987 3.4078 40 1 8.6516 -3.6782 4.5066 41 1 8.2387 -4.1300 6.1788 42 1 8.6123 -1.6680 5.9269 43 1 6.9536 -2.0483 6.4516 44 1 6.4509 0.4872 3.8819 45 1 8.6760 1.1693 4.0968 46 1 9.0348 -0.0669 5.3353 47 1 8.6725 1.4769 6.9813 48 1 8.3137 2.7131 5.7427 49 1 6.4245 1.7662 7.5347 50 1 6.0049 2.3853 5.9067 51 1 6.4393 -0.5235 6.7791 52 1 5.0780 0.1648 5.8338 53 1 2.2490 -1.6319 -1.1525 54 1 3.0610 -0.4628 -5.4348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503438465.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:19 Heat of formation + Delta-G solvation = -91.330331 kcal Electronic energy + Delta-G solvation = -31217.570274 eV Core-core repulsion = 27188.366297 eV Total energy + Delta-G solvation = -4029.203977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.87564 -40.01614 -38.86424 -38.26990 -35.92431 -35.43183 -34.22739 -32.74504 -31.54125 -30.00319 -29.70537 -29.40649 -26.50246 -26.12832 -25.44618 -23.94110 -22.63256 -21.98404 -21.48178 -21.04116 -20.30603 -19.65400 -18.48766 -17.86306 -17.56230 -17.03111 -16.86367 -16.54427 -16.28631 -15.95627 -15.85557 -15.62832 -15.59752 -15.32023 -15.06403 -14.61017 -14.54646 -14.38455 -14.14010 -13.89265 -13.71397 -13.55602 -13.12152 -12.91460 -12.77203 -12.64325 -12.62379 -12.33731 -12.29707 -12.24558 -12.12144 -12.06813 -11.98643 -11.79043 -11.69309 -11.59772 -11.50916 -11.23884 -11.04599 -10.97713 -10.63363 -10.15152 -9.31505 -9.29897 -8.02056 -5.33711 1.34506 1.38936 1.45156 1.47820 1.95613 2.47670 2.59706 2.88051 3.30321 3.55448 3.61796 3.62468 3.68283 3.73558 3.88987 3.90128 3.95375 4.01389 4.15160 4.20984 4.23963 4.27938 4.43488 4.45486 4.50995 4.58603 4.60874 4.62656 4.63345 4.73804 4.74427 4.82318 4.82868 4.87178 4.92430 4.99514 5.04303 5.06896 5.14827 5.17322 5.19809 5.26688 5.35510 5.39870 5.43568 5.58264 5.79774 5.83762 5.95566 6.01453 6.22768 6.52976 7.09923 7.21397 7.87091 8.04400 9.20113 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.002788 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.177961 B =10038.917738 C =10761.262433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.118 4.118 5 C 0.130 3.870 6 N -0.712 5.712 7 C 0.512 3.488 8 O -0.565 6.565 9 C 0.044 3.956 10 H 0.092 0.908 11 C 0.078 3.922 12 O -0.385 6.385 13 C 0.055 3.945 14 C 0.015 3.985 15 N -0.527 5.527 16 C 0.077 3.923 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.156 4.156 21 N -0.751 5.751 22 C -0.221 4.221 23 H 0.056 0.944 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.952 3.048 27 H -0.275 1.275 28 H -0.302 1.302 29 H -0.255 1.255 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.417 0.583 38 H 0.047 0.953 39 H 0.121 0.879 40 H 0.053 0.947 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.089 0.911 52 H 0.062 0.938 53 H 0.364 0.636 54 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 -5.702 32.948 34.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.006 3.994 6 N -0.365 5.365 7 C 0.297 3.703 8 O -0.442 6.442 9 C -0.068 4.068 10 H 0.109 0.891 11 C 0.000 4.000 12 O -0.303 6.303 13 C -0.021 4.021 14 C -0.111 4.111 15 N -0.252 5.252 16 C -0.031 4.031 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.195 4.195 21 N -0.395 5.395 22 C -0.353 4.353 23 H 0.074 0.926 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.780 3.220 27 H -0.201 1.201 28 H -0.229 1.229 29 H -0.180 1.180 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.075 0.925 51 H 0.107 0.893 52 H 0.081 0.919 53 H 0.197 0.803 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.842 -5.350 31.979 33.358 hybrid contribution -0.312 -0.360 -0.648 0.805 sum 7.530 -5.711 31.330 32.725 Atomic orbital electron populations 1.22246 0.96622 1.01644 1.00923 1.20424 0.93363 0.95209 0.84983 0.94201 1.21962 0.92275 1.02637 0.98745 1.21146 0.95484 0.96194 0.86583 1.45943 1.07154 1.56546 1.26896 1.20743 0.82377 0.80041 0.87097 1.90744 1.56466 1.46507 1.50524 1.22210 0.93487 0.96026 0.95054 0.89053 1.22538 1.00534 0.88516 0.88396 1.88007 1.39977 1.56190 1.46097 1.22947 0.85865 0.92407 1.00924 1.23022 1.01998 0.94872 0.91243 1.62058 1.25594 1.02793 1.34743 1.22629 0.97060 0.86991 0.96450 1.22152 0.96265 0.98230 0.98636 1.22124 0.96725 0.98704 0.98253 1.22250 0.95824 0.95881 1.01707 1.23184 0.99757 0.98739 0.97796 1.42847 1.79923 1.09564 1.07142 1.19025 1.34499 0.94361 0.87371 0.92630 1.25469 1.02695 1.02361 0.95328 1.69881 1.55120 1.37634 1.01203 0.85452 0.77617 0.81195 0.77758 1.20060 1.22913 1.18006 0.92587 0.90399 0.95317 0.89828 0.87346 0.93339 0.94245 0.74555 0.93489 0.86096 0.92898 0.85424 0.87665 0.91885 0.92224 0.93403 0.90209 0.90137 0.91870 0.89957 0.92455 0.89293 0.91904 0.80285 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.49 71.98 0.68 -4.04 16 2 C 0.17 5.84 2.89 44.99 0.13 5.97 16 3 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 4 C -0.12 -2.88 4.87 30.60 0.15 -2.73 16 5 C 0.13 3.86 5.56 86.38 0.48 4.35 16 6 N -0.71 -16.02 5.56 -463.05 -2.57 -18.59 16 7 C 0.51 13.87 5.84 87.66 0.51 14.38 16 8 O -0.56 -21.66 15.53 -3.03 -0.05 -21.71 16 9 C 0.04 0.88 2.20 44.18 0.10 0.98 16 10 H 0.09 1.38 7.62 -2.39 -0.02 1.36 16 11 C 0.08 1.49 6.27 72.02 0.45 1.94 16 12 O -0.38 -6.93 10.83 -148.98 -1.61 -8.54 16 13 C 0.06 0.76 7.01 72.01 0.50 1.26 16 14 C 0.02 0.21 4.84 86.31 0.42 0.63 16 15 N -0.53 -10.70 4.27 -843.04 -3.60 -14.30 16 16 C 0.08 1.57 2.56 45.99 0.12 1.69 16 17 C -0.11 -2.08 6.32 31.32 0.20 -1.88 16 18 C -0.12 -1.63 6.80 31.32 0.21 -1.42 16 19 C -0.12 -1.57 6.83 31.66 0.22 -1.35 16 20 C -0.16 -2.24 5.52 31.88 0.18 -2.06 16 21 N -0.75 -34.14 4.38 -322.93 -1.41 -35.55 16 22 C -0.22 -12.71 10.41 84.04 0.87 -11.83 16 23 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 24 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 25 N -0.99 -65.08 13.97 21.65 0.30 -64.78 16 26 Si 0.95 47.02 27.74 68.60 1.90 48.92 16 27 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 29 H -0.26 -11.50 6.52 99.48 0.65 -10.85 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.51 7.75 -2.38 -0.02 1.49 16 37 H 0.42 5.83 8.47 -92.71 -0.79 5.04 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.18 6.14 -2.39 -0.01 1.16 16 43 H 0.06 0.72 6.00 -2.39 -0.01 0.71 16 44 H 0.06 1.67 6.12 -2.39 -0.01 1.66 16 45 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.08 1.26 5.97 -2.39 -0.01 1.24 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.03 5.53 -2.39 -0.01 1.02 16 52 H 0.06 0.92 8.09 -2.38 -0.02 0.90 16 53 H 0.36 15.98 5.66 -92.71 -0.52 15.46 16 54 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -79.18 409.86 -1.83 -81.02 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.48 Total: 31.27 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.69 Total: 2.27 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -7.29 Total: -133.22 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.66 Total: -30.25 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.90 Total: 48.92 kcal Total: -79.18 -1.83 -81.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503438465.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.315 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds