Wall clock time and date at job start Sat Apr 11 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.52994 * 109.47450 * 120.00056 * 2 1 3 5 5 C 1.52999 * 109.47785 * 185.00043 * 4 2 1 6 6 N 1.46496 * 109.47530 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00277 * 180.27198 * 6 5 4 8 8 O 1.21282 * 119.99475 * 359.73015 * 7 6 5 9 9 C 1.50692 * 120.00358 * 179.72517 * 7 6 5 10 10 H 1.08996 * 109.50538 * 31.79293 * 9 7 6 11 11 C 1.53102 * 109.50740 * 271.70647 * 9 7 6 12 12 O 1.43023 * 109.25668 * 183.26000 * 11 9 7 13 13 C 1.43015 * 113.77196 * 58.60155 * 12 11 9 14 14 C 1.53096 * 109.26277 * 301.35370 * 13 12 11 15 15 N 1.47009 * 109.50944 * 151.88112 * 9 7 6 16 16 C 1.46900 * 111.00118 * 302.32991 * 15 9 7 17 17 C 1.54261 * 110.03021 * 294.93098 * 16 15 9 18 18 C 1.54895 * 104.19571 * 217.10309 * 17 16 15 19 19 C 1.54892 * 102.74632 * 37.94536 * 18 17 16 20 20 C 1.53878 * 110.03285 * 177.76253 * 16 15 9 21 21 N 1.46503 * 109.47142 * 240.00176 * 2 1 3 22 22 C 1.36942 * 119.99923 * 84.99930 * 21 2 1 23 23 H 1.07991 * 120.00103 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99658 * 179.97438 * 22 21 2 25 25 N 1.31623 * 120.00245 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46952 * 60.00344 * 26 24 22 28 28 H 1.48496 * 109.47163 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47169 * 300.00595 * 26 24 22 30 30 H 1.08996 * 109.47413 * 300.00212 * 1 2 3 31 31 H 1.09007 * 109.47300 * 59.99895 * 1 2 3 32 32 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47370 * 64.99687 * 4 2 1 34 34 H 1.09003 * 109.46956 * 305.00271 * 4 2 1 35 35 H 1.08997 * 109.46684 * 59.99663 * 5 4 2 36 36 H 1.09002 * 109.46658 * 300.00518 * 5 4 2 37 37 H 0.97001 * 120.00027 * 0.02562 * 6 5 4 38 38 H 1.08991 * 109.50816 * 303.15582 * 11 9 7 39 39 H 1.09002 * 109.50065 * 63.28484 * 11 9 7 40 40 H 1.09004 * 109.50525 * 181.41437 * 13 12 11 41 41 H 1.08994 * 109.54007 * 61.31560 * 13 12 11 42 42 H 1.08997 * 109.50301 * 296.91599 * 14 13 12 43 43 H 1.08993 * 109.50281 * 176.78366 * 14 13 12 44 44 H 1.09002 * 110.01700 * 56.36985 * 16 15 9 45 45 H 1.08995 * 110.48849 * 335.78206 * 17 16 15 46 46 H 1.08999 * 110.48808 * 98.42528 * 17 16 15 47 47 H 1.09000 * 110.75919 * 279.62979 * 18 17 16 48 48 H 1.08999 * 110.75733 * 156.25571 * 18 17 16 49 49 H 1.09000 * 110.48321 * 203.38155 * 19 18 17 50 50 H 1.08997 * 110.60061 * 80.78897 * 19 18 17 51 51 H 1.08993 * 110.03456 * 238.56885 * 20 16 15 52 52 H 1.09000 * 110.03423 * 359.95591 * 20 16 15 53 53 H 0.96999 * 119.99722 * 265.00195 * 21 2 1 54 54 H 0.96995 * 120.00316 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5101 7 6 5.3735 -1.3344 2.7786 8 8 6.1579 -0.7951 2.0269 9 6 5.8753 -2.0389 4.0125 10 1 5.2229 -2.8816 4.2411 11 6 5.8814 -1.0625 5.1918 12 8 6.4295 -1.7143 6.3409 13 6 7.7604 -2.2007 6.1478 14 6 7.7723 -3.1889 4.9785 15 7 7.2424 -2.5260 3.7781 16 6 7.2893 -3.4242 2.6167 17 6 6.4737 -4.7017 2.9034 18 6 7.2854 -5.8315 2.2222 19 6 8.7511 -5.4123 2.4964 20 6 8.7374 -3.8759 2.3579 21 7 2.0183 -0.6906 -1.1962 22 6 2.1491 -0.0074 -2.3758 23 1 1.8926 1.0405 -2.4242 24 6 2.6123 -0.6616 -3.5090 25 7 2.9253 -1.9387 -3.4500 26 14 2.7900 0.2700 -5.1184 27 1 3.7445 1.3932 -4.9372 28 1 3.2991 -0.6483 -6.1684 29 1 1.4673 0.8059 -5.5288 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7516 -1.7716 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.8531 0.4369 1.3573 36 1 3.9994 -1.0727 0.4259 37 1 3.4258 -1.7349 3.1111 38 1 6.4903 -0.1938 4.9419 39 1 4.8613 -0.7436 5.4054 40 1 8.0989 -2.7042 7.0534 41 1 8.4250 -1.3659 5.9257 42 1 7.1504 -4.0499 5.2234 43 1 8.7941 -3.5186 4.7912 44 1 6.8934 -2.9172 1.7367 45 1 6.4033 -4.8765 3.9769 46 1 5.4798 -4.6268 2.4623 47 1 7.0854 -5.8591 1.1511 48 1 7.0669 -6.7953 2.6820 49 1 9.4191 -5.8559 1.7582 50 1 9.0508 -5.7019 3.5036 51 1 9.0439 -3.5890 1.3521 52 1 9.4054 -3.4281 3.0936 53 1 2.2490 -1.6317 -1.1526 54 1 3.2494 -2.3958 -4.2417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503438466.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:22 Heat of formation + Delta-G solvation = -93.731028 kcal Electronic energy + Delta-G solvation = -31303.551031 eV Core-core repulsion = 27274.242952 eV Total energy + Delta-G solvation = -4029.308079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90600 -40.01611 -38.85973 -38.12738 -35.86504 -35.32524 -34.17252 -32.67045 -30.99935 -29.95092 -29.74384 -29.36690 -26.48660 -26.08859 -25.65422 -23.97574 -22.59072 -21.98298 -21.42988 -21.10646 -20.16755 -19.29017 -18.43158 -17.88802 -17.52414 -16.95322 -16.81463 -16.49987 -16.30016 -15.98177 -15.74173 -15.62709 -15.51507 -15.36135 -15.26950 -14.55240 -14.45970 -14.29554 -14.14246 -13.64880 -13.53565 -13.25590 -13.02874 -12.87449 -12.80255 -12.63786 -12.59530 -12.33103 -12.32089 -12.24711 -12.13759 -12.03628 -12.00738 -11.67190 -11.63019 -11.59805 -11.54155 -11.41704 -11.02006 -10.93172 -10.59852 -10.12337 -9.33091 -8.98553 -7.93414 -5.20131 1.44632 1.47652 1.50136 1.53026 1.99457 2.56217 2.61801 2.91147 3.40691 3.53040 3.60827 3.69830 3.75652 3.88388 3.90849 3.91615 3.99410 4.03936 4.20764 4.22046 4.28033 4.36312 4.43421 4.47147 4.53192 4.56081 4.59216 4.64939 4.66369 4.73412 4.75969 4.80266 4.87531 4.87956 4.96220 5.00696 5.01432 5.09907 5.14618 5.16780 5.20694 5.28120 5.39063 5.40043 5.42851 5.53090 5.61136 5.84548 5.96430 6.03959 6.29426 6.54781 7.23443 7.35432 8.13529 8.34617 9.29871 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002894 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.674497 B = 9674.112015 C =11128.941470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.136 3.864 6 N -0.712 5.712 7 C 0.513 3.487 8 O -0.566 6.566 9 C 0.041 3.959 10 H 0.086 0.914 11 C 0.082 3.918 12 O -0.385 6.385 13 C 0.057 3.943 14 C 0.014 3.986 15 N -0.523 5.523 16 C 0.076 3.924 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.116 4.116 21 N -0.735 5.735 22 C -0.234 4.234 23 H 0.073 0.927 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.282 1.282 28 H -0.297 1.297 29 H -0.276 1.276 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.415 0.585 38 H 0.052 0.948 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.050 0.950 52 H 0.083 0.917 53 H 0.371 0.629 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -6.277 25.034 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.012 3.988 6 N -0.365 5.365 7 C 0.298 3.702 8 O -0.444 6.444 9 C -0.071 4.071 10 H 0.103 0.897 11 C 0.004 3.996 12 O -0.303 6.303 13 C -0.019 4.019 14 C -0.113 4.113 15 N -0.248 5.248 16 C -0.032 4.032 17 C -0.195 4.195 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.154 4.154 21 N -0.376 5.376 22 C -0.366 4.366 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.209 1.209 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.252 0.748 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.203 0.797 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.215 -5.321 24.454 26.340 hybrid contribution -0.470 -0.613 -1.749 1.912 sum 7.745 -5.935 22.706 24.713 Atomic orbital electron populations 1.22262 0.97101 1.01032 1.00896 1.20456 0.93163 0.95166 0.85661 0.94004 1.21915 0.92388 1.02029 0.99010 1.21073 0.95362 0.96066 0.86315 1.45953 1.07257 1.56629 1.26700 1.20741 0.82315 0.80113 0.86993 1.90730 1.56389 1.46478 1.50769 1.22243 0.92097 0.99242 0.93524 0.89676 1.22537 1.01188 0.92744 0.83121 1.87998 1.30960 1.76106 1.35223 1.22933 0.83418 0.96835 0.98742 1.23016 1.02383 0.96705 0.89175 1.62213 1.18863 1.38751 1.04951 1.22398 0.97201 0.91101 0.92507 1.23038 0.98766 0.95859 1.01813 1.22425 0.95271 0.98185 1.00029 1.22359 0.96377 0.93840 1.02750 1.22184 0.94839 0.96662 1.01704 1.42646 1.78418 1.10202 1.06325 1.19560 1.34517 0.94068 0.88496 0.90874 1.25477 1.03273 0.96860 1.01306 1.69799 1.52848 1.10146 1.29265 0.85320 0.77939 0.77336 0.79877 1.20866 1.22373 1.20239 0.90499 0.94913 0.93661 0.91100 0.87458 0.93038 0.94886 0.74771 0.92960 0.85781 0.85403 0.92540 0.92416 0.87580 0.93154 0.89468 0.93109 0.92843 0.89824 0.90977 0.89708 0.93076 0.89869 0.79711 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 4 C -0.12 -3.24 4.87 30.59 0.15 -3.09 16 5 C 0.14 4.51 5.56 86.38 0.48 4.99 16 6 N -0.71 -18.31 5.56 -463.08 -2.57 -20.89 16 7 C 0.51 15.22 5.94 87.65 0.52 15.74 16 8 O -0.57 -23.08 15.44 -3.04 -0.05 -23.12 16 9 C 0.04 0.90 2.11 44.18 0.09 0.99 16 10 H 0.09 1.57 7.32 -2.39 -0.02 1.55 16 11 C 0.08 1.54 6.28 72.02 0.45 1.99 16 12 O -0.38 -6.91 10.83 -148.98 -1.61 -8.53 16 13 C 0.06 0.81 7.01 72.01 0.50 1.31 16 14 C 0.01 0.22 4.98 86.31 0.43 0.65 16 15 N -0.52 -11.84 4.25 -845.12 -3.59 -15.44 16 16 C 0.08 1.90 2.64 45.64 0.12 2.03 16 17 C -0.16 -3.17 5.16 31.67 0.16 -3.00 16 18 C -0.12 -2.21 6.91 31.89 0.22 -1.98 16 19 C -0.12 -1.84 6.83 31.67 0.22 -1.63 16 20 C -0.12 -2.46 5.92 31.32 0.19 -2.27 16 21 N -0.74 -36.61 4.57 -322.95 -1.48 -38.08 16 22 C -0.23 -13.16 9.93 84.03 0.83 -12.32 16 23 H 0.07 3.96 7.83 -2.92 -0.02 3.94 16 24 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 25 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 26 Si 0.97 47.61 29.55 68.60 2.03 49.63 16 27 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 28 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 29 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.03 1.44 7.75 -2.39 -0.02 1.43 16 37 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.80 5.99 -2.39 -0.01 0.79 16 43 H 0.11 1.36 6.18 -2.39 -0.01 1.34 16 44 H 0.05 1.75 6.18 -2.39 -0.01 1.74 16 45 H 0.09 1.45 5.58 -2.39 -0.01 1.44 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.58 6.28 -2.39 -0.02 1.56 16 53 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 54 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -75.39 412.63 -1.96 -77.35 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.62 Total: 38.27 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.65 Total: 1.24 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -7.36 Total: -134.84 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.66 Total: -31.65 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -75.39 -1.96 -77.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503438466.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.378 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds