Wall clock time and date at job start Sat Apr 11 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47211 * 180.02562 * 9 7 6 11 11 C 1.53786 * 113.61124 * 274.13950 * 10 9 7 12 12 C 1.53964 * 87.01459 * 220.04718 * 11 10 9 13 13 C 1.53006 * 113.53480 * 270.80907 * 12 11 10 14 14 C 1.53003 * 113.74018 * 139.94704 * 12 11 10 15 15 C 1.53776 * 113.61452 * 176.53206 * 10 9 7 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47257 * 59.99848 * 25 23 21 27 27 H 1.48495 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46784 * 300.00182 * 25 23 21 29 29 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 31 31 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 35 35 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 36 36 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 38 38 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 39 39 H 1.09004 * 112.85110 * 45.33031 * 10 9 7 40 40 H 1.08998 * 113.61569 * 334.56324 * 11 10 9 41 41 H 1.09002 * 113.61267 * 105.47337 * 11 10 9 42 42 H 1.08998 * 109.46421 * 157.49422 * 13 12 11 43 43 H 1.08995 * 109.47164 * 277.49574 * 13 12 11 44 44 H 1.09000 * 109.46878 * 37.50346 * 13 12 11 45 45 H 1.09001 * 109.46581 * 322.39713 * 14 12 11 46 46 H 1.09001 * 109.47341 * 82.39997 * 14 12 11 47 47 H 1.09002 * 109.46503 * 202.40199 * 14 12 11 48 48 H 1.08997 * 113.61349 * 254.52878 * 15 10 9 49 49 H 1.09004 * 113.61756 * 25.42795 * 15 10 9 50 50 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 51 51 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 52 52 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 53 53 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 54 54 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.4010 -1.9416 4.0706 11 6 8.1301 -3.0376 3.2754 12 6 9.1354 -3.1012 4.4399 13 6 10.3112 -2.1344 4.2854 14 6 9.5773 -4.5223 4.7952 15 6 8.0095 -2.5633 5.3387 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 3.0350 -1.9399 -8.8555 27 1 4.0193 0.1074 -9.7049 28 1 5.3129 -1.3534 -8.2655 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4257 -1.7353 3.1109 37 1 5.4420 -1.5889 4.8937 38 1 5.5873 -3.0996 3.9636 39 1 7.7635 -0.9353 3.8604 40 1 7.5461 -3.9496 3.1525 41 1 8.5650 -2.6829 2.3409 42 1 10.7455 -1.9313 5.2644 43 1 11.0663 -2.5811 3.6386 44 1 9.9595 -1.2022 3.8436 45 1 8.7303 -5.2013 4.6973 46 1 10.3736 -4.8348 4.1197 47 1 9.9428 -4.5430 5.8219 48 1 8.3471 -1.8263 6.0674 49 1 7.3924 -3.3454 5.7810 50 1 2.9172 -1.1206 -1.0288 51 1 1.0870 0.6165 -2.5525 52 1 2.7588 1.0462 -2.1182 53 1 2.5033 1.0618 -4.8013 54 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503438793.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:24 Heat of formation + Delta-G solvation = -104.729333 kcal Electronic energy + Delta-G solvation = -28995.797916 eV Core-core repulsion = 24966.012915 eV Total energy + Delta-G solvation = -4029.785001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25736 -40.30731 -39.96416 -38.37483 -36.07269 -35.66488 -33.42255 -33.27162 -32.50253 -30.27811 -28.55518 -28.27765 -28.04667 -26.59381 -25.86528 -24.22536 -22.32453 -21.52045 -21.17242 -20.75840 -19.94204 -19.20295 -18.08412 -17.78136 -17.28132 -17.00223 -16.71114 -16.54226 -16.26039 -15.94345 -15.63347 -15.39684 -15.19243 -15.12973 -14.71347 -14.68173 -14.28047 -14.07034 -13.98578 -13.59121 -13.52225 -13.36932 -13.16106 -13.14705 -12.88495 -12.83003 -12.68567 -12.59934 -12.46073 -12.28371 -12.25839 -12.17521 -12.12240 -11.75946 -11.70246 -11.52779 -11.45034 -11.00913 -10.88820 -10.70270 -10.37444 -10.11491 -10.04457 -9.34580 -8.48751 -5.97921 1.37889 1.39347 1.50802 1.68366 2.02094 2.21547 2.27401 2.91336 3.17947 3.48778 3.55771 3.65322 3.74152 3.79667 3.81878 3.95581 4.04945 4.12356 4.28022 4.30377 4.42029 4.42552 4.47031 4.53060 4.57891 4.59710 4.67066 4.72543 4.77315 4.80007 4.89251 4.91390 4.95673 5.00723 5.01495 5.02934 5.04361 5.04965 5.18182 5.19431 5.29901 5.33515 5.38067 5.44532 5.46757 5.59287 5.67928 5.89363 6.11459 6.38297 6.57382 6.59639 7.09676 7.31812 7.52935 8.08401 8.68409 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.001946 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.357057 B =14388.345422 C =16591.116948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.717 5.717 7 C 0.501 3.499 8 O -0.591 6.591 9 C -0.121 4.121 10 C -0.098 4.098 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.111 4.111 16 N -0.679 5.679 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.268 1.268 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.419 0.581 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.340 0.660 51 H 0.105 0.895 52 H 0.060 0.940 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -4.214 30.953 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.009 4.009 6 N -0.370 5.370 7 C 0.289 3.711 8 O -0.472 6.472 9 C -0.161 4.161 10 C -0.117 4.117 11 C -0.171 4.171 12 C -0.093 4.093 13 C -0.187 4.187 14 C -0.190 4.190 15 C -0.149 4.149 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.120 0.880 50 H 0.160 0.840 51 H 0.123 0.877 52 H 0.078 0.922 53 H 0.230 0.770 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.965 -4.713 30.147 30.657 hybrid contribution 0.853 0.687 -1.175 1.606 sum 3.818 -4.026 28.972 29.499 Atomic orbital electron populations 1.21774 0.93058 1.02374 1.02107 1.21651 0.97031 0.96030 0.88106 0.93163 1.21878 0.92067 1.02934 0.98502 1.21287 0.95445 0.96626 0.87529 1.45902 1.07680 1.56824 1.26628 1.21555 0.81993 0.79572 0.87979 1.90719 1.56686 1.47988 1.51777 1.21743 0.96400 1.02657 0.95262 1.22221 0.92940 0.98646 0.97859 1.23213 0.98292 0.98886 0.96754 1.21833 0.94351 0.96402 0.96670 1.21607 0.96954 0.98118 1.02070 1.21712 1.01315 0.94343 1.01620 1.23069 0.96440 1.00282 0.95073 1.60267 1.34515 1.32593 1.04022 1.21578 1.02132 0.93704 0.89380 1.20915 0.83262 0.88022 0.85481 1.90481 1.56702 1.18269 1.85620 1.41933 1.58246 1.12562 1.08240 1.19634 1.42358 0.95975 0.88609 0.90415 1.26073 0.97176 0.96685 1.01426 1.69671 1.48448 1.09674 1.28216 0.84975 0.78659 0.77875 0.76730 1.19559 1.19268 1.19851 0.92504 0.89817 0.93562 0.87200 0.89893 0.94541 0.92669 0.74354 0.85754 0.86573 0.90949 0.89652 0.94394 0.91199 0.92776 0.93699 0.92032 0.93240 0.91567 0.90743 0.88028 0.83984 0.87669 0.92193 0.76977 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.41 71.98 0.68 -1.93 16 2 C 0.08 1.80 2.65 44.91 0.12 1.92 16 3 H 0.05 1.08 7.80 -2.39 -0.02 1.06 16 4 C -0.12 -1.90 4.92 30.59 0.15 -1.75 16 5 C 0.12 2.52 5.50 86.38 0.48 3.00 16 6 N -0.72 -12.15 5.56 -463.06 -2.57 -14.72 16 7 C 0.50 10.91 7.83 87.66 0.69 11.60 16 8 O -0.59 -19.76 15.79 -3.04 -0.05 -19.80 16 9 C -0.12 -1.51 5.52 29.85 0.16 -1.35 16 10 C -0.10 -1.60 2.76 -10.27 -0.03 -1.62 16 11 C -0.13 -2.49 6.76 31.18 0.21 -2.27 16 12 C -0.09 -1.31 1.39 -51.59 -0.07 -1.39 16 13 C -0.13 -1.97 9.07 71.98 0.65 -1.32 16 14 C -0.13 -1.54 9.20 71.98 0.66 -0.88 16 15 C -0.11 -1.22 6.79 31.12 0.21 -1.01 16 16 N -0.68 -22.08 5.93 -495.58 -2.94 -25.02 16 17 C 0.06 2.35 5.97 85.56 0.51 2.86 16 18 C 0.44 21.85 7.82 87.66 0.69 22.53 16 19 O -0.62 -36.29 15.78 -3.05 -0.05 -36.33 16 20 N -0.57 -30.72 5.29 -306.99 -1.62 -32.34 16 21 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 24 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 25 Si 0.99 44.25 29.55 68.60 2.03 46.28 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.07 6.43 -2.39 -0.02 1.05 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.42 3.66 8.47 -92.71 -0.79 2.88 16 37 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.97 7.88 -2.39 -0.02 0.95 16 39 H 0.07 1.58 7.25 -2.39 -0.02 1.56 16 40 H 0.08 1.42 7.75 -2.39 -0.02 1.40 16 41 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.04 0.80 7.34 -2.39 -0.02 0.78 16 45 H 0.06 0.65 7.96 -2.39 -0.02 0.63 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 49 H 0.10 0.74 8.06 -2.38 -0.02 0.72 16 50 H 0.34 12.13 6.17 -89.69 -0.55 11.58 16 51 H 0.11 3.43 7.44 -2.39 -0.02 3.41 16 52 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 53 H 0.40 20.15 7.90 -92.71 -0.73 19.41 16 54 H 0.28 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -78.64 432.07 0.29 -78.35 By element: Atomic # 1 Polarization: 46.33 SS G_CDS: -1.17 Total: 45.16 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.39 Total: 9.08 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.85 Total: -122.72 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -0.10 Total: -56.14 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -78.64 0.29 -78.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503438793.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.384 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds