Wall clock time and date at job start Sat Apr 11 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 N 1.46894 * 109.46927 * 119.99610 * 2 1 3 5 5 C 1.46903 * 111.00270 * 275.00239 * 4 2 1 6 6 C 1.50699 * 109.47109 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00067 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00163 * 179.97438 * 6 5 4 9 9 C 1.37100 * 120.00186 * 179.97438 * 8 6 5 10 10 H 1.07993 * 119.99543 * 0.02562 * 9 8 6 11 11 C 1.38949 * 119.99851 * 180.02562 * 9 8 6 12 12 N 1.31406 * 119.99833 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00057 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47008 * 89.99679 * 13 11 9 15 15 H 1.48493 * 109.47047 * 209.99754 * 13 11 9 16 16 H 1.48500 * 109.47078 * 329.99881 * 13 11 9 17 17 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 18 18 H 1.09002 * 109.47153 * 299.99641 * 17 2 1 19 19 C 1.53002 * 109.46817 * 179.97438 * 17 2 1 20 20 N 1.46505 * 109.47212 * 59.99649 * 17 2 1 21 21 C 1.34769 * 119.99686 * 204.99833 * 20 17 2 22 22 O 1.21275 * 120.00678 * 0.02562 * 21 20 17 23 23 C 1.50701 * 119.99690 * 179.97438 * 21 20 17 24 24 C 1.53006 * 109.46955 * 60.00305 * 23 21 20 25 25 C 1.52999 * 109.47405 * 300.00410 * 23 21 20 26 26 C 1.53006 * 109.46979 * 299.99881 * 25 23 21 27 27 C 1.52999 * 109.46803 * 300.00012 * 26 25 23 28 28 C 1.52999 * 109.47363 * 60.00224 * 27 26 25 29 29 C 1.52999 * 109.47228 * 179.97438 * 23 21 20 30 30 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 33 33 H 1.00901 * 111.00047 * 38.96011 * 4 2 1 34 34 H 1.09000 * 109.47021 * 300.00052 * 5 4 2 35 35 H 1.08998 * 109.47037 * 60.00492 * 5 4 2 36 36 H 0.97007 * 119.99349 * 0.02562 * 8 6 5 37 37 H 0.97003 * 120.00132 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47075 * 299.99262 * 19 17 2 39 39 H 1.08996 * 109.47407 * 60.00219 * 19 17 2 40 40 H 1.09000 * 109.46986 * 179.97438 * 19 17 2 41 41 H 0.97000 * 119.99634 * 25.00165 * 20 17 2 42 42 H 1.08996 * 109.47443 * 59.99845 * 24 23 21 43 43 H 1.09004 * 109.47114 * 179.97438 * 24 23 21 44 44 H 1.09000 * 109.46977 * 299.99426 * 24 23 21 45 45 H 1.08998 * 109.47093 * 59.99855 * 25 23 21 46 46 H 1.09004 * 109.47271 * 179.97438 * 25 23 21 47 47 H 1.08996 * 109.46925 * 179.97438 * 26 25 23 48 48 H 1.08996 * 109.47141 * 59.99585 * 26 25 23 49 49 H 1.09001 * 109.47605 * 299.99536 * 27 26 25 50 50 H 1.09004 * 109.47272 * 179.97438 * 27 26 25 51 51 H 1.09006 * 109.47052 * 180.02562 * 28 27 26 52 52 H 1.08996 * 109.47523 * 59.99849 * 28 27 26 53 53 H 1.09004 * 109.47203 * 180.02562 * 29 23 21 54 54 H 1.08996 * 109.47469 * 300.00560 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0823 0.2227 2.3469 6 6 2.5883 -0.5214 3.5558 7 8 2.8695 -1.6981 3.4698 8 7 2.7294 0.1210 4.7322 9 6 3.1893 -0.5561 5.8321 10 1 3.4388 -1.6040 5.7557 11 6 3.3342 0.1060 7.0451 12 7 3.7745 -0.5430 8.0994 13 14 2.9018 1.9185 7.1773 14 1 1.4724 2.0602 7.5542 15 1 3.7526 2.5560 8.2140 16 1 3.1366 2.5801 5.8687 17 6 2.0400 -0.7212 -1.2492 18 1 1.6768 -1.7489 -1.2492 19 6 3.5701 -0.7206 -1.2494 20 7 1.5516 -0.0306 -2.4454 21 6 1.4230 -0.7030 -3.6063 22 8 1.7111 -1.8798 -3.6607 23 6 0.9201 0.0072 -4.8367 24 6 1.8637 1.1615 -5.1807 25 6 -0.4826 0.5571 -4.5706 26 6 -1.4261 -0.5972 -4.2266 27 6 -1.4774 -1.5803 -5.3978 28 6 -0.0746 -2.1302 -5.6639 29 6 0.8695 -0.9757 -6.0081 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.4495 -1.4979 1.4100 34 1 2.7587 1.0463 2.1182 35 1 1.0869 0.6164 2.5525 36 1 2.5049 1.0622 4.8008 37 1 3.8760 -0.0807 8.9461 38 1 3.9330 0.3072 -1.2497 39 1 3.9338 -1.2342 -0.3595 40 1 3.9335 -1.2348 -2.1392 41 1 1.3209 0.9105 -2.4018 42 1 2.8630 0.7699 -5.3702 43 1 1.5002 1.6750 -6.0708 44 1 1.9001 1.8619 -4.3463 45 1 -0.4461 1.2575 -3.7362 46 1 -0.8462 1.0712 -5.4604 47 1 -2.4253 -0.2054 -4.0366 48 1 -1.0624 -1.1110 -3.3368 49 1 -1.8411 -1.0667 -6.2878 50 1 -2.1492 -2.4029 -5.1527 51 1 -0.1111 -2.8303 -6.4987 52 1 0.2891 -2.6439 -4.7741 53 1 0.5061 -0.4619 -6.8981 54 1 1.8690 -1.3671 -6.1975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505682968.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:38 Heat of formation + Delta-G solvation = -120.016128 kcal Electronic energy + Delta-G solvation = -30803.283926 eV Core-core repulsion = 26772.836040 eV Total energy + Delta-G solvation = -4030.447886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81428 -40.36879 -39.05982 -37.79190 -36.08336 -35.47214 -33.91199 -33.72159 -31.96098 -31.27260 -30.49252 -28.05583 -27.32892 -25.66765 -25.05067 -23.60571 -23.33607 -21.79169 -21.56254 -21.23395 -20.34908 -20.17285 -17.83224 -17.45290 -17.32342 -16.83570 -16.47806 -16.42812 -15.80020 -15.67232 -15.39136 -15.17673 -15.05760 -14.90396 -14.76358 -14.54435 -14.34574 -14.30590 -14.11883 -13.88580 -13.44292 -13.24909 -13.10368 -13.07614 -13.02623 -12.90527 -12.73776 -12.69462 -12.53098 -12.41685 -12.40381 -12.20805 -11.97333 -11.91726 -11.65097 -11.55202 -11.50070 -11.02479 -10.92096 -10.45431 -10.39962 -10.24127 -10.00192 -9.27458 -8.40339 -6.01506 1.30853 1.36779 1.45924 1.76352 1.97799 2.13413 2.24300 2.82480 3.16247 3.45365 3.62967 3.66141 3.74574 3.82290 4.03434 4.09064 4.17889 4.24268 4.28718 4.28974 4.43716 4.44568 4.50177 4.54148 4.58398 4.61863 4.64908 4.73239 4.82260 4.83249 4.86884 4.91458 4.96704 5.00244 5.04765 5.12424 5.14766 5.22124 5.24464 5.31392 5.36687 5.38792 5.40076 5.42761 5.52734 5.57325 5.71169 5.92340 6.07444 6.34519 6.60760 6.66943 6.89491 7.40175 7.41136 7.98643 8.77461 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.002026 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.370826 B =13817.513750 C =13922.295129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.107 0.893 4 N -0.678 5.678 5 C 0.066 3.934 6 C 0.447 3.553 7 O -0.616 6.616 8 N -0.591 5.591 9 C -0.328 4.328 10 H 0.052 0.948 11 C -0.019 4.019 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.257 1.257 15 H -0.277 1.277 16 H -0.228 1.228 17 C 0.162 3.838 18 H 0.056 0.944 19 C -0.144 4.144 20 N -0.708 5.708 21 C 0.523 3.477 22 O -0.579 6.579 23 C -0.075 4.075 24 C -0.140 4.140 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.137 4.137 29 C -0.091 4.091 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.344 0.656 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.412 0.588 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.037 0.963 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.088 0.912 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 14.168 -30.867 36.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.125 0.875 4 N -0.310 5.310 5 C -0.066 4.066 6 C 0.235 3.765 7 O -0.500 6.500 8 N -0.233 5.233 9 C -0.458 4.458 10 H 0.071 0.929 11 C -0.217 4.217 12 N -0.577 5.577 13 Si 0.787 3.213 14 H -0.181 1.181 15 H -0.202 1.202 16 H -0.151 1.151 17 C 0.056 3.944 18 H 0.074 0.926 19 C -0.203 4.203 20 N -0.360 5.360 21 C 0.311 3.689 22 O -0.458 6.458 23 C -0.078 4.078 24 C -0.197 4.197 25 C -0.138 4.138 26 C -0.162 4.162 27 C -0.154 4.154 28 C -0.174 4.174 29 C -0.129 4.129 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.249 0.751 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.056 0.944 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.076 0.924 53 H 0.107 0.893 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.467 12.615 -30.894 35.286 hybrid contribution -0.657 0.229 1.226 1.410 sum -12.124 12.844 -29.667 34.527 Atomic orbital electron populations 1.22468 0.95608 1.02082 1.03466 1.21757 0.93659 0.98550 0.88441 0.87527 1.59944 1.58768 1.09238 1.03004 1.21647 1.02023 0.95227 0.87702 1.21071 0.82450 0.87946 0.84998 1.90561 1.55306 1.18917 1.85252 1.42022 1.60655 1.11827 1.08783 1.18991 1.42468 0.95974 0.88329 0.92935 1.26173 0.96431 1.05233 0.93844 1.69814 1.46381 1.39682 1.01806 0.85332 0.79355 0.76270 0.80341 1.18106 1.20200 1.15106 1.20574 0.93922 0.96096 0.83799 0.92609 1.21924 0.95344 1.02127 1.00874 1.45886 1.66951 1.14426 1.08769 1.21051 0.76040 0.86667 0.85158 1.90639 1.51510 1.18201 1.85459 1.20895 0.97962 0.96805 0.92120 1.21882 0.97892 0.96119 1.03799 1.21643 0.91015 0.97304 1.03872 1.21577 1.00359 0.96686 0.97557 1.21521 0.96139 0.98700 0.99010 1.21766 0.95655 0.98192 1.01796 1.21376 0.99309 0.95468 0.96742 0.89924 0.93783 0.91597 0.83738 0.86425 0.90122 0.77387 0.91191 0.91414 0.92220 0.94710 0.75094 0.93335 0.89377 0.90522 0.89797 0.88649 0.90339 0.94413 0.90492 0.92926 0.92527 0.92405 0.89340 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.00 71.98 0.65 -2.07 16 2 C 0.09 1.58 2.22 44.92 0.10 1.68 16 3 H 0.11 1.47 7.80 -2.39 -0.02 1.45 16 4 N -0.68 -18.63 5.11 -495.59 -2.53 -21.16 16 5 C 0.07 1.85 5.97 85.56 0.51 2.36 16 6 C 0.45 19.73 7.82 87.66 0.69 20.42 16 7 O -0.62 -34.17 15.78 -3.07 -0.05 -34.22 16 8 N -0.59 -27.35 5.09 -306.98 -1.56 -28.91 16 9 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 10 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 11 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 12 N -0.94 -56.63 13.96 21.66 0.30 -56.33 16 13 Si 0.97 38.14 27.74 68.60 1.90 40.04 16 14 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 17 C 0.16 3.46 2.34 44.99 0.11 3.57 16 18 H 0.06 1.58 7.58 -2.39 -0.02 1.57 16 19 C -0.14 -3.53 9.33 71.98 0.67 -2.86 16 20 N -0.71 -10.96 4.17 -442.54 -1.84 -12.81 16 21 C 0.52 10.27 4.93 87.66 0.43 10.70 16 22 O -0.58 -17.15 13.32 -3.01 -0.04 -17.19 16 23 C -0.07 -0.93 0.62 -52.93 -0.03 -0.96 16 24 C -0.14 -1.12 8.37 71.98 0.60 -0.52 16 25 C -0.10 -0.81 4.64 30.60 0.14 -0.67 16 26 C -0.12 -1.52 5.70 30.60 0.17 -1.35 16 27 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 28 C -0.14 -2.48 5.63 30.61 0.17 -2.30 16 29 C -0.09 -1.36 4.38 30.61 0.13 -1.22 16 30 H 0.08 0.89 7.45 -2.39 -0.02 0.88 16 31 H 0.04 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.07 0.95 7.45 -2.39 -0.02 0.93 16 33 H 0.34 10.73 8.17 -89.69 -0.73 9.99 16 34 H 0.12 2.67 8.06 -2.39 -0.02 2.65 16 35 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 36 H 0.39 14.67 5.76 -92.70 -0.53 14.14 16 37 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 40 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.41 3.57 7.22 -92.71 -0.67 2.90 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.08 0.38 7.56 -2.39 -0.02 0.36 16 45 H 0.08 0.39 7.56 -2.39 -0.02 0.38 16 46 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.04 0.66 7.22 -2.39 -0.02 0.64 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 52 H 0.06 1.48 5.51 -2.39 -0.01 1.47 16 53 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 54 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -82.38 414.15 0.93 -81.45 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -1.09 Total: 42.68 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.85 Total: 6.44 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -5.64 Total: -119.21 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.09 Total: -51.41 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -82.38 0.93 -81.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505682968.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.564 kcal (2) G-P(sol) polarization free energy of solvation -82.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds