Wall clock time and date at job start Sat Apr 11 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47448 * 2 1 4 4 C 1.53002 * 109.47081 * 119.99604 * 2 1 3 5 5 H 1.09002 * 109.47226 * 300.00391 * 4 2 1 6 6 C 1.53006 * 109.47133 * 59.99936 * 4 2 1 7 7 C 1.50699 * 109.47443 * 179.97438 * 4 2 1 8 8 O 1.21274 * 119.99956 * 0.02562 * 7 4 2 9 9 N 1.34778 * 120.00179 * 180.02562 * 7 4 2 10 10 C 1.48149 * 127.83754 * 0.02693 * 9 7 4 11 11 C 1.54388 * 104.61850 * 219.56731 * 10 9 7 12 12 H 1.09002 * 110.33946 * 217.26680 * 11 10 9 13 13 N 1.46894 * 110.34483 * 95.00151 * 11 10 9 14 14 C 1.46909 * 110.99960 * 89.46498 * 13 11 10 15 15 C 1.50698 * 109.47347 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99661 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99965 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00295 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99609 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99317 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00398 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47262 * 89.99734 * 22 20 18 24 24 H 1.48499 * 109.47466 * 209.99890 * 22 20 18 25 25 H 1.48501 * 109.47211 * 330.00126 * 22 20 18 26 26 C 1.54289 * 104.96084 * 336.13141 * 11 10 9 27 27 C 1.52994 * 110.34290 * 241.13355 * 26 11 10 28 28 C 1.52996 * 110.34029 * 118.86929 * 26 11 10 29 29 C 1.48141 * 127.83974 * 180.02562 * 9 7 4 30 30 H 1.09002 * 109.47410 * 300.00118 * 1 2 3 31 31 H 1.09003 * 109.47153 * 60.00441 * 1 2 3 32 32 H 1.09002 * 109.47488 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47723 * 239.99193 * 2 1 3 34 34 H 1.09003 * 109.46918 * 299.99478 * 3 2 1 35 35 H 1.09002 * 109.46911 * 59.99577 * 3 2 1 36 36 H 1.08996 * 109.47293 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.46693 * 60.00128 * 6 4 2 38 38 H 1.09003 * 109.47394 * 180.02562 * 6 4 2 39 39 H 1.08996 * 109.47034 * 300.00362 * 6 4 2 40 40 H 1.08999 * 110.40616 * 338.34851 * 10 9 7 41 41 H 1.08997 * 110.40974 * 100.66037 * 10 9 7 42 42 H 1.00900 * 111.00157 * 213.41568 * 13 11 10 43 43 H 1.09004 * 109.46731 * 299.99825 * 14 13 11 44 44 H 1.08994 * 109.46980 * 59.99505 * 14 13 11 45 45 H 0.97004 * 119.99769 * 0.02562 * 17 15 14 46 46 H 0.97001 * 119.99394 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47050 * 176.98802 * 27 26 11 48 48 H 1.09004 * 109.47222 * 296.98841 * 27 26 11 49 49 H 1.08992 * 109.47585 * 56.99177 * 27 26 11 50 50 H 1.08997 * 109.47875 * 303.00999 * 28 26 11 51 51 H 1.09002 * 109.47333 * 63.01664 * 28 26 11 52 52 H 1.09004 * 109.46717 * 183.00917 * 28 26 11 53 53 H 1.09002 * 110.40986 * 21.65069 * 29 9 7 54 54 H 1.08998 * 110.50630 * 259.27110 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2494 7 6 3.5469 -0.7218 1.2491 8 8 4.1533 -0.1967 0.3395 9 7 4.2207 -1.3059 2.2596 10 6 3.6618 -1.9924 3.4475 11 6 4.5814 -1.5665 4.6123 12 1 4.7286 -2.3976 5.3021 13 7 4.0107 -0.4110 5.3173 14 6 3.1218 -0.8438 6.4039 15 6 2.5561 0.3660 7.1021 16 8 2.8635 1.4792 6.7312 17 7 1.7086 0.2110 8.1385 18 6 1.1943 1.3116 8.7739 19 1 1.4680 2.3028 8.4438 20 6 0.3210 1.1518 9.8428 21 7 -0.1715 2.2068 10.4522 22 14 -0.1519 -0.5625 10.4143 23 1 0.8073 -1.0208 11.4513 24 1 -1.5222 -0.5335 10.9859 25 1 -0.1166 -1.4964 9.2602 26 6 5.9176 -1.1808 3.9443 27 6 7.0455 -2.0813 4.4520 28 6 6.2444 0.2886 4.2180 29 6 5.6883 -1.4070 2.4346 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4424 0.0005 37 1 1.8933 -2.6776 0.3594 38 1 1.8928 -2.6774 2.1397 39 1 0.4399 -2.1637 1.2493 40 1 2.6391 -1.6629 3.6307 41 1 3.6934 -3.0734 3.3117 42 1 4.7380 0.1957 5.6650 43 1 2.3070 -1.4389 5.9915 44 1 3.6858 -1.4447 7.1171 45 1 1.4630 -0.6793 8.4352 46 1 -0.7815 2.0952 11.1982 47 1 7.9708 -1.8326 3.9325 48 1 7.1779 -1.9289 5.5232 49 1 6.7913 -3.1241 4.2621 50 1 5.4260 0.9150 3.8633 51 1 6.3780 0.4376 5.2895 52 1 7.1621 0.5599 3.6963 53 1 6.1944 -0.6360 1.8537 54 1 6.0406 -2.3958 2.1408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507447292.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:53 Heat of formation + Delta-G solvation = -91.430002 kcal Electronic energy + Delta-G solvation = -31573.554260 eV Core-core repulsion = 27544.345961 eV Total energy + Delta-G solvation = -4029.208299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63372 -40.35871 -39.66807 -37.00578 -36.15473 -35.49189 -34.58222 -33.71135 -31.71562 -30.08239 -28.81120 -28.27618 -27.54963 -27.17724 -25.66568 -24.97780 -23.02352 -21.55997 -21.25569 -20.51403 -19.99761 -19.62926 -18.20821 -17.73751 -17.29273 -16.97930 -16.68384 -16.24703 -15.92069 -15.57962 -15.40609 -15.29336 -15.14270 -14.98507 -14.67709 -14.44515 -14.21875 -14.07503 -13.88129 -13.71676 -13.41924 -13.34368 -13.14595 -13.05803 -12.92127 -12.84049 -12.73913 -12.72764 -12.44045 -12.40015 -12.38765 -12.01009 -11.96605 -11.80158 -11.74851 -11.63202 -11.52389 -11.49065 -11.43423 -10.52330 -10.38590 -10.23004 -9.69770 -9.20189 -8.39597 -6.00690 1.31688 1.37607 1.46769 1.67510 1.99268 2.04113 2.25112 2.74711 3.17449 3.34000 3.36556 3.61693 3.67344 3.79771 3.93593 3.99564 4.18272 4.22596 4.24463 4.33034 4.41924 4.44972 4.51581 4.53146 4.59494 4.62691 4.68690 4.69478 4.75456 4.77374 4.78434 4.82980 4.92728 4.95759 4.99945 5.01874 5.05724 5.07994 5.16895 5.18431 5.24124 5.32769 5.37106 5.45244 5.48885 5.51863 5.55684 5.94073 6.13916 6.40289 6.62113 6.62584 6.90698 7.22324 7.42526 8.00264 8.78311 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.003292 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.526382 B = 8503.216563 C =10079.636006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.158 4.158 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.143 4.143 7 C 0.535 3.465 8 O -0.582 6.582 9 N -0.614 5.614 10 C 0.105 3.895 11 C 0.077 3.923 12 H 0.095 0.905 13 N -0.683 5.683 14 C 0.060 3.940 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.328 4.328 19 H 0.051 0.949 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.278 1.278 25 H -0.227 1.227 26 C -0.073 4.073 27 C -0.132 4.132 28 C -0.136 4.136 29 C 0.114 3.886 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.349 0.651 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.390 0.610 46 H 0.278 0.722 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.038 0.962 51 H 0.057 0.943 52 H 0.063 0.937 53 H 0.059 0.941 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -20.262 -15.665 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.215 4.215 4 C -0.123 4.123 5 H 0.107 0.893 6 C -0.200 4.200 7 C 0.326 3.674 8 O -0.463 6.463 9 N -0.346 5.346 10 C -0.018 4.018 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.321 5.321 14 C -0.072 4.072 15 C 0.236 3.764 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.458 4.458 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.203 1.203 25 H -0.150 1.150 26 C -0.074 4.074 27 C -0.190 4.190 28 C -0.194 4.194 29 C -0.009 4.009 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.173 0.827 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.057 0.943 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.078 0.922 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.925 -19.003 -16.761 26.549 hybrid contribution 0.141 0.245 1.394 1.422 sum 8.066 -18.757 -15.368 25.555 Atomic orbital electron populations 1.21893 0.93340 1.02900 1.02066 1.20863 0.96401 0.95403 0.96368 1.22027 1.02115 0.96414 1.00949 1.21346 0.89941 1.00313 1.00664 0.89337 1.21937 1.02836 0.92125 1.03137 1.20691 0.90586 0.76037 0.80091 1.90593 1.71320 1.46778 1.37565 1.48895 1.07855 1.55526 1.22337 1.22842 0.98696 0.97403 0.82888 1.22721 0.92593 0.92630 0.95346 0.88736 1.60355 1.24696 1.18177 1.28829 1.21733 0.98825 0.93220 0.93454 1.21086 0.81909 0.91736 0.81713 1.90561 1.63369 1.29070 1.67151 1.42014 1.42990 1.07680 1.30518 1.18985 1.25885 0.87658 1.13249 0.93045 1.26152 0.95865 1.03673 0.95789 1.69821 1.32400 1.32355 1.23193 0.85349 0.78653 0.77183 0.80221 1.18149 1.20288 1.14963 1.21626 0.95317 0.96181 0.94289 1.21838 0.96592 0.99192 1.01355 1.21725 1.00986 0.95492 1.01186 1.22484 0.80941 1.02267 0.95175 0.93078 0.91936 0.90666 0.91334 0.92236 0.94229 0.92525 0.92152 0.90588 0.89812 0.89780 0.87358 0.82696 0.86560 0.90051 0.77389 0.91218 0.91578 0.91977 0.90211 0.94312 0.92445 0.91812 0.92190 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.84 71.98 0.64 -1.93 16 2 C -0.07 -1.60 2.15 -10.80 -0.02 -1.62 16 3 C -0.16 -4.21 8.87 71.98 0.64 -3.57 16 4 C -0.10 -2.23 1.65 -11.54 -0.02 -2.25 16 5 H 0.09 2.18 7.95 -2.39 -0.02 2.17 16 6 C -0.14 -2.14 8.59 71.98 0.62 -1.52 16 7 C 0.54 14.26 6.97 87.66 0.61 14.87 16 8 O -0.58 -19.55 13.93 -3.01 -0.04 -19.59 16 9 N -0.61 -13.20 3.31 -808.01 -2.67 -15.87 16 10 C 0.10 1.67 4.96 86.53 0.43 2.09 16 11 C 0.08 1.31 3.03 45.82 0.14 1.45 16 12 H 0.10 1.11 7.39 -2.39 -0.02 1.09 16 13 N -0.68 -18.04 5.27 -490.88 -2.59 -20.63 16 14 C 0.06 1.60 6.02 85.55 0.52 2.12 16 15 C 0.45 19.29 7.82 87.66 0.69 19.98 16 16 O -0.62 -33.71 15.78 -3.07 -0.05 -33.76 16 17 N -0.59 -26.74 5.09 -306.99 -1.56 -28.30 16 18 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 19 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 20 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 21 N -0.94 -56.21 13.96 21.67 0.30 -55.91 16 22 Si 0.97 37.53 27.74 68.60 1.90 39.44 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 24 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.23 -7.18 6.52 99.48 0.65 -6.53 16 26 C -0.07 -1.21 1.03 -51.28 -0.05 -1.26 16 27 C -0.13 -1.42 8.24 71.98 0.59 -0.82 16 28 C -0.14 -3.03 7.08 71.98 0.51 -2.52 16 29 C 0.11 2.13 6.14 86.53 0.53 2.66 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.05 6.43 -2.39 -0.02 1.04 16 33 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.81 5.51 -2.39 -0.01 1.79 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.94 5.34 -2.39 -0.01 0.93 16 39 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 40 H 0.08 1.50 6.46 -2.39 -0.02 1.49 16 41 H 0.11 1.00 8.01 -2.39 -0.02 0.99 16 42 H 0.35 10.44 5.26 -89.69 -0.47 9.97 16 43 H 0.12 2.47 8.12 -2.39 -0.02 2.45 16 44 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 45 H 0.39 14.31 5.76 -92.71 -0.53 13.78 16 46 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.04 1.14 7.65 -2.39 -0.02 1.13 16 51 H 0.06 1.29 6.89 -2.39 -0.02 1.27 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.06 1.40 7.60 -2.39 -0.02 1.38 16 54 H 0.09 1.30 7.86 -2.39 -0.02 1.28 16 Total: -1.00 -81.69 410.65 2.26 -79.43 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: -0.17 Total: 46.07 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 7.13 Total: 9.12 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -6.52 Total: -120.70 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.09 Total: -53.35 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.90 Total: 39.44 kcal Total: -81.69 2.26 -79.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507447292.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.001 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds