Wall clock time and date at job start Sat Apr 11 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46795 * 2 1 4 4 C 1.50700 * 109.46823 * 240.00512 * 2 1 3 5 5 O 1.21281 * 120.00088 * 239.99834 * 4 2 1 6 6 N 1.34779 * 120.00281 * 59.99403 * 4 2 1 7 7 C 1.46498 * 120.00306 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47412 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.47576 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47199 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00084 * 294.29881 * 10 9 8 12 12 C 1.53236 * 109.34264 * 172.74877 * 11 10 9 13 13 N 1.47082 * 108.51996 * 53.82879 * 12 11 10 14 14 C 1.36935 * 120.88153 * 128.84011 * 13 12 11 15 15 H 1.08009 * 119.99893 * 333.48570 * 14 13 12 16 16 C 1.38808 * 120.00210 * 153.49039 * 14 13 12 17 17 N 1.31623 * 120.00078 * 159.44390 * 16 14 13 18 18 Si 1.86804 * 120.00024 * 339.43694 * 16 14 13 19 19 H 1.48501 * 109.46541 * 91.97985 * 18 16 14 20 20 H 1.48500 * 109.47270 * 211.97962 * 18 16 14 21 21 H 1.48493 * 109.46800 * 331.98117 * 18 16 14 22 22 C 1.47079 * 118.23884 * 308.81821 * 13 12 11 23 23 C 1.46901 * 110.99633 * 169.99885 * 10 9 8 24 24 C 1.52992 * 109.47600 * 120.00523 * 2 1 3 25 25 H 1.08999 * 109.87481 * 179.29981 * 24 2 1 26 26 C 1.54106 * 109.87552 * 300.30494 * 24 2 1 27 27 C 1.54817 * 104.18417 * 121.60377 * 26 24 2 28 28 C 1.54991 * 102.09590 * 20.88163 * 27 26 24 29 29 O 1.43752 * 110.00464 * 58.20886 * 24 2 1 30 30 H 1.08999 * 109.46548 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46649 * 299.99532 * 1 2 3 32 32 H 1.08999 * 109.47230 * 59.99858 * 1 2 3 33 33 H 0.97000 * 119.99990 * 0.02562 * 6 4 2 34 34 H 1.08996 * 109.47525 * 300.01217 * 7 6 4 35 35 H 1.09004 * 109.46913 * 60.00633 * 7 6 4 36 36 H 1.09006 * 109.47526 * 300.00780 * 8 7 6 37 37 H 1.08999 * 109.46970 * 60.00700 * 8 7 6 38 38 H 1.09003 * 109.46410 * 300.00492 * 9 8 7 39 39 H 1.08993 * 109.47001 * 59.99664 * 9 8 7 40 40 H 1.09006 * 109.49209 * 292.71072 * 11 10 9 41 41 H 1.09000 * 109.49391 * 52.78547 * 11 10 9 42 42 H 1.09001 * 109.62885 * 294.12127 * 12 11 10 43 43 H 1.08995 * 109.63090 * 173.54118 * 12 11 10 44 44 H 0.97003 * 119.99993 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.63021 * 291.47439 * 22 13 12 46 46 H 1.09004 * 109.78708 * 170.98900 * 22 13 12 47 47 H 1.08999 * 109.49454 * 307.21192 * 23 10 9 48 48 H 1.08999 * 109.49250 * 67.29089 * 23 10 9 49 49 H 1.08995 * 110.48960 * 240.27581 * 26 24 2 50 50 H 1.08991 * 110.48916 * 2.79537 * 26 24 2 51 51 H 1.09001 * 110.90538 * 139.08248 * 27 26 24 52 52 H 1.09002 * 110.90559 * 262.68018 * 27 26 24 53 53 H 1.08996 * 110.61831 * 81.47634 * 28 27 26 54 54 H 1.08999 * 110.61761 * 204.31944 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1194 6 7 1.7066 -0.2498 -2.4547 7 6 2.1953 -0.9400 -3.6509 8 6 1.6857 -0.2185 -4.9000 9 6 2.1955 -0.9397 -6.1494 10 7 1.7066 -0.2465 -7.3487 11 6 0.2445 -0.3428 -7.4532 12 6 -0.2410 0.5392 -8.6084 13 7 0.4955 0.1632 -9.8247 14 6 -0.1680 -0.1233 -10.9878 15 1 -1.1820 -0.4936 -10.9538 16 6 0.4626 0.0621 -12.2104 17 7 0.0220 -0.5657 -13.2800 18 14 1.9364 1.2028 -12.3377 19 1 3.1845 0.4227 -12.1407 20 1 1.9563 1.8381 -13.6798 21 1 1.8400 2.2544 -11.2937 22 6 1.9637 0.1036 -9.7588 23 6 2.3623 -0.7613 -8.5583 24 6 2.0402 -0.7213 1.2491 25 1 3.1301 -0.7360 1.2494 26 6 1.5254 -0.0067 2.5137 27 6 0.7320 -1.0996 3.2706 28 6 1.3191 -2.4021 2.6696 29 8 1.5332 -2.0661 1.2819 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1492 0.5390 -2.5436 34 1 3.2853 -0.9397 -3.6508 35 1 1.8324 -1.9678 -3.6511 36 1 0.5956 -0.2185 -4.9003 37 1 2.0490 0.8091 -4.8997 38 1 3.2856 -0.9400 -6.1492 39 1 1.8320 -1.9672 -6.1496 40 1 -0.0392 -1.3782 -7.6419 41 1 -0.2097 -0.0049 -6.5217 42 1 -0.0508 1.5867 -8.3742 43 1 -1.3085 0.3839 -8.7640 44 1 0.4630 -0.4365 -14.1343 45 1 2.3658 1.1091 -9.6353 46 1 2.3565 -0.3379 -10.6748 47 1 3.4440 -0.7268 -8.4284 48 1 2.0491 -1.7908 -8.7317 49 1 2.3603 0.3466 3.1188 50 1 0.8728 0.8234 2.2438 51 1 0.9217 -1.0458 4.3426 52 1 -0.3349 -1.0210 3.0613 53 1 2.2623 -2.6566 3.1529 54 1 0.6076 -3.2226 2.7629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566643982.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:14 Heat of formation + Delta-G solvation = -80.564844 kcal Electronic energy + Delta-G solvation = -29791.823226 eV Core-core repulsion = 25763.086076 eV Total energy + Delta-G solvation = -4028.737150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32801 -40.06013 -39.73573 -37.14344 -35.82566 -34.86295 -33.77384 -32.81006 -32.24463 -31.79679 -29.10644 -28.49989 -26.33146 -25.39485 -24.92925 -23.90653 -23.01485 -22.33681 -21.91655 -21.03073 -20.57397 -18.83658 -18.18717 -17.55667 -17.28038 -17.07125 -16.82103 -16.40881 -16.37275 -15.97032 -15.88864 -15.74396 -15.48533 -15.34058 -14.91788 -14.59511 -14.53253 -14.39648 -14.15707 -13.99070 -13.63345 -13.26909 -13.05218 -12.96390 -12.85588 -12.67912 -12.51850 -12.50710 -12.41598 -12.25917 -12.18344 -12.08308 -11.91682 -11.88246 -11.62142 -11.58913 -11.45046 -11.37766 -10.75676 -10.66930 -10.56011 -10.05836 -9.37911 -8.90054 -8.17417 -5.48896 1.29977 1.41696 1.51649 1.70925 2.18261 2.41349 2.89490 2.99669 3.07130 3.36686 3.58843 3.71885 3.89027 3.93418 4.02312 4.02948 4.11328 4.12457 4.15348 4.22271 4.26491 4.40102 4.43041 4.44082 4.49950 4.56089 4.60021 4.63662 4.68037 4.74888 4.79060 4.82669 4.83159 4.85312 4.95523 4.96110 4.98474 4.99050 5.02000 5.16603 5.17531 5.24700 5.25656 5.30991 5.37566 5.49244 5.82027 6.07527 6.07957 6.10305 6.21574 6.60828 6.89258 7.32822 7.60579 8.03163 9.02398 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.001641 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.211216 B =17057.779526 C =17228.299995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.138 0.862 4 C 0.510 3.490 5 O -0.579 6.579 6 N -0.720 5.720 7 C 0.127 3.873 8 C -0.110 4.110 9 C 0.058 3.942 10 N -0.535 5.535 11 C 0.049 3.951 12 C 0.145 3.855 13 N -0.624 5.624 14 C -0.250 4.250 15 H 0.052 0.948 16 C -0.037 4.037 17 N -0.958 5.958 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.310 1.310 21 H -0.263 1.263 22 C 0.125 3.875 23 C 0.052 3.948 24 C 0.088 3.912 25 H 0.051 0.949 26 C -0.147 4.147 27 C -0.147 4.147 28 C 0.032 3.968 29 O -0.389 6.389 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.016 0.984 41 H 0.106 0.894 42 H 0.040 0.960 43 H 0.060 0.940 44 H 0.262 0.738 45 H 0.037 0.963 46 H 0.052 0.948 47 H 0.093 0.907 48 H 0.020 0.980 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.095 0.905 52 H 0.082 0.918 53 H 0.057 0.943 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 4.931 37.135 37.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.155 0.845 4 C 0.297 3.703 5 O -0.458 6.458 6 N -0.373 5.373 7 C 0.003 3.997 8 C -0.148 4.148 9 C -0.070 4.070 10 N -0.260 5.260 11 C -0.080 4.080 12 C 0.021 3.979 13 N -0.349 5.349 14 C -0.380 4.380 15 H 0.069 0.931 16 C -0.231 4.231 17 N -0.604 5.604 18 Si 0.779 3.221 19 H -0.200 1.200 20 H -0.239 1.239 21 H -0.187 1.187 22 C 0.000 4.000 23 C -0.078 4.078 24 C 0.030 3.970 25 H 0.069 0.931 26 C -0.185 4.185 27 C -0.185 4.185 28 C -0.045 4.045 29 O -0.309 6.309 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.111 0.889 48 H 0.039 0.961 49 H 0.105 0.895 50 H 0.120 0.880 51 H 0.114 0.886 52 H 0.100 0.900 53 H 0.075 0.925 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.697 4.566 36.907 37.372 hybrid contribution 0.244 -0.523 -1.040 1.189 sum 3.941 4.044 35.867 36.309 Atomic orbital electron populations 1.21751 0.90967 1.02515 1.04276 1.21646 0.99415 1.01064 0.90573 0.84467 1.21160 0.79357 0.84142 0.85623 1.90715 1.39698 1.27991 1.87362 1.45922 1.53883 1.32489 1.04962 1.21128 0.98893 0.95805 0.83895 1.21621 1.01798 1.00490 0.90895 1.22032 1.00720 0.95105 0.89183 1.61915 1.05668 1.56290 1.02127 1.22566 0.87967 0.97823 0.99621 1.21207 0.95266 0.96612 0.84858 1.44556 1.01679 1.80405 1.08296 1.18883 0.99054 1.36021 0.84001 0.93054 1.25899 1.01790 1.00564 0.94876 1.69973 1.45205 1.44377 1.00848 0.85870 0.80016 0.80585 0.75638 1.19960 1.23915 1.18713 1.21450 0.84117 0.97767 0.96697 1.22444 0.99237 0.95859 0.90221 1.22572 0.97109 0.82613 0.94750 0.93088 1.23074 1.01331 0.99317 0.94763 1.23115 1.00796 0.93391 1.01193 1.23731 1.00162 0.98827 0.81762 1.89006 1.85645 1.30387 1.25831 0.93682 0.89221 0.90494 0.74756 0.92281 0.93245 0.90365 0.89417 0.89912 0.95372 0.96564 0.87647 0.94209 0.92157 0.92958 0.94516 0.93013 0.88865 0.96128 0.89463 0.87985 0.88609 0.89965 0.92451 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.67 71.98 0.62 -0.62 16 2 C -0.11 -1.30 2.52 -11.54 -0.03 -1.32 16 3 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.51 10.37 7.02 87.66 0.62 10.99 16 5 O -0.58 -17.90 15.37 12.95 0.20 -17.70 16 6 N -0.72 -11.14 5.45 -463.07 -2.52 -13.67 16 7 C 0.13 2.34 5.67 86.38 0.49 2.83 16 8 C -0.11 -1.83 5.26 30.59 0.16 -1.67 16 9 C 0.06 1.29 4.96 86.31 0.43 1.72 16 10 N -0.54 -15.72 4.63 -895.26 -4.14 -19.86 16 11 C 0.05 1.50 5.46 86.38 0.47 1.97 16 12 C 0.15 5.56 6.69 86.35 0.58 6.13 16 13 N -0.62 -29.86 2.82 -698.13 -1.97 -31.83 16 14 C -0.25 -14.43 10.08 84.03 0.85 -13.58 16 15 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 16 C -0.04 -2.17 5.24 84.86 0.44 -1.73 16 17 N -0.96 -60.91 13.97 21.65 0.30 -60.61 16 18 Si 0.95 47.18 24.31 68.60 1.67 48.84 16 19 H -0.27 -12.73 6.58 99.48 0.65 -12.08 16 20 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 21 H -0.26 -12.57 6.61 99.48 0.66 -11.91 16 22 C 0.12 5.38 4.35 86.35 0.38 5.75 16 23 C 0.05 1.79 5.62 86.38 0.49 2.27 16 24 C 0.09 1.33 2.66 30.97 0.08 1.41 16 25 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 26 C -0.15 -1.07 6.15 31.59 0.19 -0.88 16 27 C -0.15 -1.09 7.15 31.90 0.23 -0.86 16 28 C 0.03 0.43 7.72 72.66 0.56 0.99 16 29 O -0.39 -8.30 9.53 -133.00 -1.27 -9.57 16 30 H 0.04 0.66 7.66 -2.39 -0.02 0.64 16 31 H 0.09 0.43 6.39 -2.39 -0.02 0.41 16 32 H 0.08 0.45 7.56 -2.39 -0.02 0.43 16 33 H 0.42 3.71 7.89 -92.71 -0.73 2.98 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.22 6.40 -2.38 -0.02 1.21 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 39 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 40 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.11 2.44 6.16 -2.39 -0.01 2.43 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16 44 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.04 1.56 6.94 -2.39 -0.02 1.54 16 46 H 0.05 2.45 4.61 -2.38 -0.01 2.44 16 47 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 50 H 0.10 0.35 6.22 -2.39 -0.01 0.34 16 51 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.62 405.64 -1.14 -80.75 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.04 Total: 10.23 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.56 Total: 13.41 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -8.33 Total: -125.97 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.07 Total: -27.27 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.67 Total: 48.84 kcal Total: -79.62 -1.14 -80.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566643982.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.188 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds