Wall clock time and date at job start Sat Apr 11 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 C 1.52996 * 109.46980 * 119.99494 * 2 1 3 5 5 C 1.53006 * 109.47102 * 175.00470 * 4 2 1 6 6 H 1.08993 * 109.46955 * 55.00306 * 5 4 2 7 7 C 1.52999 * 109.46626 * 294.99833 * 5 4 2 8 8 C 1.52997 * 109.47127 * 175.00294 * 5 4 2 9 9 C 1.50701 * 109.47348 * 184.99767 * 8 5 4 10 10 O 1.21280 * 119.99638 * 359.97438 * 9 8 5 11 11 N 1.34771 * 120.00118 * 179.97438 * 9 8 5 12 12 C 1.46503 * 119.99694 * 180.02562 * 11 9 8 13 13 H 1.09005 * 112.85084 * 336.19098 * 12 11 9 14 14 C 1.53782 * 113.61485 * 107.50271 * 12 11 9 15 15 C 1.53780 * 87.08312 * 89.11599 * 14 12 11 16 16 H 1.09006 * 113.68567 * 270.87411 * 15 14 12 17 17 N 1.46897 * 113.61865 * 139.98144 * 15 14 12 18 18 C 1.46895 * 111.00158 * 107.50066 * 17 15 14 19 19 C 1.50697 * 109.47299 * 180.02562 * 18 17 15 20 20 O 1.21294 * 119.99984 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00284 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00290 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99597 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00213 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99796 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47558 * 59.99752 * 26 24 22 28 28 H 1.48506 * 109.47237 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47329 * 299.99717 * 26 24 22 30 30 C 1.53786 * 87.08238 * 25.43115 * 15 14 12 31 31 H 1.08992 * 109.47145 * 300.00489 * 1 2 3 32 32 H 1.09007 * 109.46993 * 60.00267 * 1 2 3 33 33 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47615 * 240.00042 * 2 1 3 35 35 H 1.08992 * 109.47651 * 59.99821 * 3 2 1 36 36 H 1.09002 * 109.46918 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.46846 * 299.99714 * 3 2 1 38 38 H 1.09000 * 109.47145 * 55.00233 * 4 2 1 39 39 H 1.09007 * 109.47521 * 295.00239 * 4 2 1 40 40 H 1.09002 * 109.46719 * 180.02562 * 7 5 4 41 41 H 1.08993 * 109.47839 * 299.99931 * 7 5 4 42 42 H 1.09000 * 109.47160 * 60.00369 * 7 5 4 43 43 H 1.09002 * 109.47196 * 304.99671 * 8 5 4 44 44 H 1.09001 * 109.47630 * 64.99767 * 8 5 4 45 45 H 0.96994 * 120.00210 * 359.97438 * 11 9 8 46 46 H 1.09002 * 113.60956 * 203.66355 * 14 12 11 47 47 H 1.08998 * 113.61525 * 334.56213 * 14 12 11 48 48 H 1.00899 * 111.00028 * 231.45556 * 17 15 14 49 49 H 1.09001 * 109.47144 * 300.00245 * 18 17 15 50 50 H 1.08996 * 109.47453 * 60.00094 * 18 17 15 51 51 H 0.96998 * 119.99663 * 0.02562 * 21 19 18 52 52 H 0.97000 * 120.00462 * 180.02562 * 25 24 22 53 53 H 1.08996 * 113.61429 * 220.02498 * 30 15 14 54 54 H 1.08999 * 113.61192 * 89.11606 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8308 1.1881 6 1 3.9953 0.1613 1.0529 7 6 3.9650 -1.7251 0.0129 8 6 4.0851 -1.4391 2.4920 9 6 5.5921 -1.4343 2.4824 10 8 6.1910 -0.9886 1.5266 11 7 6.2742 -1.9252 3.5360 12 6 7.7392 -1.9199 3.5269 13 1 8.1562 -1.8975 2.5200 14 6 8.3574 -0.8789 4.4751 15 6 8.3151 -1.9625 5.5654 16 1 7.3830 -1.9790 6.1304 17 7 9.5048 -1.9773 6.4270 18 6 9.1929 -1.4552 7.7642 19 6 10.4347 -1.4852 8.6174 20 8 11.4772 -1.9003 8.1567 21 7 10.3873 -1.0499 9.8921 22 6 11.5170 -1.0778 10.6685 23 1 12.4450 -1.4481 10.2584 24 6 11.4679 -0.6295 11.9827 25 7 10.3387 -0.1793 12.4817 26 14 13.0072 -0.6668 13.0402 27 1 14.0589 0.1737 12.4135 28 1 12.6921 -0.1384 14.3919 29 1 13.4945 -2.0648 13.1560 30 6 8.3648 -2.9971 4.4287 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6054 -1.7197 1.2953 39 1 1.7516 -0.1581 2.1370 40 1 5.0513 -1.8036 -0.0305 41 1 3.5345 -2.7172 0.1481 42 1 3.5943 -1.2917 -0.9161 43 1 3.7253 -0.8511 3.3363 44 1 3.7257 -2.4641 2.5837 45 1 5.7953 -2.2813 4.3006 46 1 9.3677 -0.5797 4.1959 47 1 7.7042 -0.0301 4.6773 48 1 9.8987 -2.9045 6.4837 49 1 8.8356 -0.4289 7.6793 50 1 8.4207 -2.0718 8.2241 51 1 9.5538 -0.7177 10.2603 52 1 10.3044 0.1340 13.3990 53 1 7.7173 -3.8583 4.5936 54 1 9.3770 -3.2769 4.1370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566809733.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:16 Heat of formation + Delta-G solvation = -104.837429 kcal Electronic energy + Delta-G solvation = -28727.086277 eV Core-core repulsion = 24697.296588 eV Total energy + Delta-G solvation = -4029.789689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34508 -40.23593 -39.58524 -38.20683 -36.12977 -35.38341 -34.40741 -33.51804 -33.16808 -29.12912 -28.26851 -27.97539 -27.46724 -26.68955 -26.07531 -24.03864 -22.66762 -21.23719 -21.04059 -20.34456 -20.17278 -19.87805 -18.18063 -17.78208 -17.06394 -16.87811 -16.60385 -16.35542 -16.22715 -16.09556 -15.62278 -15.55665 -15.17918 -15.02247 -14.76003 -14.65017 -14.17326 -14.13683 -13.68237 -13.51499 -13.43122 -13.26348 -13.21075 -13.05519 -12.89213 -12.84486 -12.60744 -12.51807 -12.42779 -12.29732 -12.14115 -12.11851 -11.81905 -11.54530 -11.51423 -11.48040 -11.41191 -11.22818 -11.15953 -10.63789 -10.33009 -10.01687 -9.98355 -9.29802 -8.46618 -5.95493 1.39932 1.42039 1.52800 1.70561 2.05474 2.21496 2.29473 2.96854 3.20784 3.48889 3.58177 3.65902 3.78208 3.79950 3.96991 3.99930 4.13693 4.14442 4.24268 4.30744 4.36805 4.47696 4.53823 4.59617 4.60383 4.70386 4.75073 4.75554 4.83017 4.86320 4.87539 4.89079 5.00021 5.01865 5.07390 5.09527 5.10753 5.14777 5.20240 5.21832 5.36969 5.38155 5.40696 5.49909 5.60047 5.62796 5.68679 5.93734 6.17413 6.44354 6.60308 6.62877 7.12552 7.35171 7.56289 8.11764 8.70441 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.001466 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.321638 B =19088.753300 C =19886.984565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.104 4.104 5 C -0.076 4.076 6 H 0.060 0.940 7 C -0.150 4.150 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.704 5.704 12 C 0.126 3.874 13 H 0.087 0.913 14 C -0.139 4.139 15 C 0.061 3.939 16 H 0.091 0.909 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.271 1.271 30 C -0.133 4.133 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.415 0.585 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.347 0.653 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.094 0.906 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.612 -3.518 -20.940 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.141 4.141 5 C -0.095 4.095 6 H 0.078 0.922 7 C -0.207 4.207 8 C -0.171 4.171 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.020 3.980 13 H 0.105 0.895 14 C -0.179 4.179 15 C -0.048 4.048 16 H 0.109 0.891 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.196 1.196 30 C -0.172 4.172 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.252 0.748 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.167 0.833 49 H 0.116 0.884 50 H 0.089 0.911 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.112 0.888 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.320 -2.811 -21.946 31.428 hybrid contribution 0.081 -0.377 1.522 1.570 sum -22.239 -3.188 -20.424 30.362 Atomic orbital electron populations 1.21827 0.94689 1.01966 1.01811 1.21159 0.95960 0.96017 0.98683 1.21901 1.00698 0.96457 1.01725 1.21664 0.93312 1.01169 0.97984 1.20907 0.95814 0.99274 0.93512 0.92155 1.21931 1.01369 0.99354 0.98037 1.21823 0.89089 1.05392 1.00839 1.21361 0.91534 0.75866 0.81420 1.90672 1.71978 1.47518 1.35649 1.45683 1.05782 1.63138 1.20956 1.21526 0.80663 0.96869 0.98968 0.89509 1.23512 1.01116 0.97270 0.95999 1.23219 0.92037 0.97368 0.92213 0.89135 1.60177 1.29258 1.30613 1.10462 1.21577 0.93411 1.02447 0.89196 1.20948 0.91372 0.82556 0.82791 1.90491 1.34219 1.52858 1.73523 1.41929 1.12037 1.56552 1.10468 1.19642 0.90907 1.41904 0.94181 0.90377 1.26016 1.01355 0.95860 0.97869 1.69659 1.26934 1.42453 1.16974 0.85002 0.77491 0.78785 0.77139 1.19882 1.19423 1.19609 1.23501 1.02510 0.96860 0.94312 0.92534 0.92856 0.92258 0.91446 0.92552 0.93422 0.92843 0.90807 0.91212 0.93517 0.92265 0.92790 0.86852 0.86537 0.74810 0.90134 0.91846 0.83298 0.88393 0.91134 0.76960 0.91280 0.88786 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.10 -1.03 2.78 -10.79 -0.03 -1.06 16 3 C -0.15 -1.79 8.96 71.98 0.64 -1.14 16 4 C -0.10 -0.94 4.15 30.60 0.13 -0.82 16 5 C -0.08 -0.98 1.90 -10.79 -0.02 -1.00 16 6 H 0.06 1.06 6.16 -2.39 -0.01 1.04 16 7 C -0.15 -2.26 8.70 71.98 0.63 -1.64 16 8 C -0.13 -1.34 5.17 29.85 0.15 -1.19 16 9 C 0.51 9.01 7.55 87.66 0.66 9.67 16 10 O -0.58 -15.49 13.56 -3.03 -0.04 -15.53 16 11 N -0.70 -10.13 5.26 -440.02 -2.32 -12.45 16 12 C 0.13 2.37 4.32 45.52 0.20 2.57 16 13 H 0.09 1.99 7.46 -2.38 -0.02 1.97 16 14 C -0.14 -3.11 7.68 31.12 0.24 -2.87 16 15 C 0.06 1.28 4.02 45.44 0.18 1.46 16 16 H 0.09 1.54 7.87 -2.38 -0.02 1.52 16 17 N -0.67 -20.20 6.18 -492.87 -3.05 -23.25 16 18 C 0.07 2.19 6.01 85.56 0.51 2.71 16 19 C 0.44 20.62 7.82 87.66 0.69 21.31 16 20 O -0.62 -34.64 15.78 -3.07 -0.05 -34.68 16 21 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 22 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 25 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 26 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 C -0.13 -2.25 7.40 31.12 0.23 -2.02 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.77 6.34 -2.39 -0.02 0.75 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.68 6.46 -2.39 -0.02 0.67 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.05 0.98 5.95 -2.39 -0.01 0.97 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 0.79 6.46 -2.39 -0.02 0.77 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.41 3.46 8.70 -92.71 -0.81 2.65 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.35 10.83 8.25 -89.69 -0.74 10.09 16 49 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 50 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 51 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 52 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 53 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 54 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -72.35 428.11 0.02 -72.33 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -1.37 Total: 41.73 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.15 Total: 6.94 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.70 Total: -115.63 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.09 Total: -50.21 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.35 0.02 -72.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566809733.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.507 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds