Wall clock time and date at job start Sat Apr 11 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47331 * 2 1 4 4 C 1.53001 * 109.47239 * 239.99262 * 2 1 3 5 5 C 1.52996 * 109.47062 * 175.00486 * 4 2 1 6 6 N 1.46495 * 109.47096 * 180.02562 * 5 4 2 7 7 C 1.34787 * 120.00162 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99549 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00018 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47451 * 299.99716 * 9 7 6 11 11 C 1.53000 * 109.47286 * 60.00097 * 9 7 6 12 12 C 1.53006 * 109.46986 * 179.97438 * 9 7 6 13 13 C 1.53782 * 113.61464 * 282.07014 * 12 9 7 14 14 C 1.53775 * 87.08306 * 220.02220 * 13 12 9 15 15 C 1.53784 * 87.08295 * 25.43151 * 14 13 12 16 16 N 1.46909 * 109.46803 * 119.99503 * 2 1 3 17 17 C 1.46897 * 110.99546 * 275.00015 * 16 2 1 18 18 C 1.50702 * 109.46901 * 179.97438 * 17 16 2 19 19 O 1.21297 * 120.00061 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00558 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00477 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00025 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00084 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00161 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00049 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47453 * 89.99372 * 25 23 21 27 27 H 1.48497 * 109.47105 * 209.99830 * 25 23 21 28 28 H 1.48504 * 109.46922 * 329.99827 * 25 23 21 29 29 H 1.09005 * 109.46750 * 60.00537 * 1 2 3 30 30 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47426 * 300.00591 * 1 2 3 32 32 H 1.09003 * 109.47182 * 295.00191 * 4 2 1 33 33 H 1.08994 * 109.47176 * 55.00399 * 4 2 1 34 34 H 1.09003 * 109.46881 * 299.99889 * 5 4 2 35 35 H 1.09004 * 109.47180 * 59.99934 * 5 4 2 36 36 H 0.96998 * 120.00244 * 359.97438 * 6 5 4 37 37 H 1.09001 * 109.47095 * 60.00356 * 10 9 7 38 38 H 1.09003 * 109.47833 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.47149 * 300.00358 * 10 9 7 40 40 H 1.09000 * 109.47200 * 53.46604 * 11 9 7 41 41 H 1.08998 * 109.47238 * 173.46961 * 11 9 7 42 42 H 1.09005 * 109.47124 * 293.46717 * 11 9 7 43 43 H 1.08996 * 112.85175 * 53.37958 * 12 9 7 44 44 H 1.09001 * 113.61252 * 334.56851 * 13 12 9 45 45 H 1.08996 * 113.61471 * 105.46556 * 13 12 9 46 46 H 1.09008 * 113.61418 * 270.88532 * 14 13 12 47 47 H 1.08995 * 113.62065 * 139.98481 * 14 13 12 48 48 H 1.08996 * 113.61366 * 220.02308 * 15 14 13 49 49 H 1.08996 * 113.68817 * 89.13012 * 15 14 13 50 50 H 1.00897 * 110.99751 * 38.95344 * 16 2 1 51 51 H 1.08995 * 109.47621 * 299.99777 * 17 16 2 52 52 H 1.08998 * 109.47198 * 60.00303 * 17 16 2 53 53 H 0.97008 * 119.99663 * 359.97438 * 20 18 17 54 54 H 0.96996 * 120.00166 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 7 4.0532 -1.3037 -2.5098 7 6 5.3741 -1.3391 -2.7756 8 8 6.1584 -0.7991 -2.0244 9 6 5.8764 -2.0496 -4.0059 10 6 5.4723 -3.5239 -3.9442 11 6 5.2659 -1.4051 -5.2520 12 6 7.4012 -1.9405 -4.0710 13 6 7.9003 -0.5735 -4.5679 14 6 8.9712 -1.3408 -5.3610 15 6 8.0075 -2.5391 -5.3513 16 7 2.0196 -0.6924 1.1996 17 6 2.0824 0.2228 2.3469 18 6 2.5871 -0.5215 3.5561 19 8 2.8676 -1.6985 3.4705 20 7 2.7280 0.1208 4.7326 21 6 3.1877 -0.5561 5.8325 22 1 3.4374 -1.6040 5.7562 23 6 3.3335 0.1063 7.0452 24 7 3.7737 -0.5427 8.0997 25 14 2.9023 1.9191 7.1770 26 1 1.4732 2.0619 7.5542 27 1 3.7539 2.5564 8.2133 28 1 3.1372 2.5802 5.8682 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7517 -1.7717 -1.2054 33 1 1.6055 -0.2620 -2.1369 34 1 3.8532 0.4367 -1.3573 35 1 3.9994 -1.0730 -0.4257 36 1 3.4259 -1.7353 -3.1108 37 1 4.3860 -3.6013 -3.8981 38 1 5.8352 -4.0378 -4.8344 39 1 5.9073 -3.9830 -3.0564 40 1 5.4558 -0.3319 -5.2361 41 1 5.7161 -1.8407 -6.1440 42 1 4.1906 -1.5837 -5.2637 43 1 7.8892 -2.2792 -3.1571 44 1 7.1821 -0.0492 -5.1983 45 1 8.3094 0.0556 -3.7774 46 1 9.8895 -1.5144 -4.7998 47 1 9.1526 -0.9344 -6.3560 48 1 8.5032 -3.4968 -5.1931 49 1 7.3181 -2.5536 -6.1954 50 1 1.4495 -1.4978 1.4102 51 1 2.7588 1.0463 2.1182 52 1 1.0870 0.6165 2.5524 53 1 2.5049 1.0624 4.8008 54 1 3.8750 -0.0804 8.9464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567224014.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:31 Heat of formation + Delta-G solvation = -92.761046 kcal Electronic energy + Delta-G solvation = -29803.515328 eV Core-core repulsion = 25774.249311 eV Total energy + Delta-G solvation = -4029.266017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64346 -40.38353 -39.45365 -38.27568 -36.11637 -35.81143 -34.90475 -33.77978 -32.49470 -29.70216 -28.42832 -28.09235 -26.66561 -26.17221 -25.67336 -24.73231 -23.02317 -21.85550 -21.32736 -20.85314 -20.27560 -19.37055 -17.95399 -17.71496 -17.23568 -16.99985 -16.72207 -16.49029 -16.24481 -15.95724 -15.79952 -15.52188 -15.15853 -14.95613 -14.70026 -14.46034 -14.34962 -14.01621 -13.93759 -13.73440 -13.62179 -13.57604 -13.15144 -13.09984 -12.86761 -12.77016 -12.66928 -12.54251 -12.44089 -12.30080 -12.21661 -12.15371 -12.02875 -11.99173 -11.72590 -11.52999 -11.26248 -11.25185 -10.93877 -10.53869 -10.43945 -10.26933 -10.01711 -9.24724 -8.43343 -6.04289 1.28301 1.33348 1.42643 1.72224 1.94027 2.21094 2.26724 2.73286 3.13037 3.43767 3.54782 3.68546 3.71346 3.88423 3.95544 4.01598 4.11241 4.13422 4.15311 4.27643 4.32798 4.36773 4.41107 4.47852 4.56753 4.58109 4.69774 4.75234 4.81952 4.84107 4.85597 4.91609 4.97071 4.98564 5.04509 5.06572 5.12628 5.17890 5.20195 5.25165 5.28978 5.33445 5.35155 5.44890 5.51362 5.54889 5.67307 5.90119 6.10225 6.44941 6.58009 6.64422 6.86067 7.35859 7.37686 7.94704 8.74475 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002058 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.948825 B =13605.095321 C =14748.804566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.086 0.914 4 C -0.103 4.103 5 C 0.127 3.873 6 N -0.716 5.716 7 C 0.510 3.490 8 O -0.590 6.590 9 C -0.066 4.066 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.095 4.095 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.123 4.123 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.253 1.253 27 H -0.275 1.275 28 H -0.234 1.234 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.345 0.655 51 H 0.106 0.894 52 H 0.079 0.921 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 3.503 -34.879 35.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 H 0.104 0.896 4 C -0.141 4.141 5 C 0.003 3.997 6 N -0.368 5.368 7 C 0.298 3.702 8 O -0.470 6.470 9 C -0.069 4.069 10 C -0.195 4.195 11 C -0.198 4.198 12 C -0.114 4.114 13 C -0.180 4.180 14 C -0.177 4.177 15 C -0.160 4.160 16 N -0.316 5.316 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.157 1.157 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.056 0.944 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.125 0.875 50 H 0.164 0.836 51 H 0.124 0.876 52 H 0.097 0.903 53 H 0.225 0.775 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.675 3.170 -34.340 34.590 hybrid contribution -0.779 0.551 1.583 1.848 sum -3.453 3.721 -32.757 33.148 Atomic orbital electron populations 1.22433 0.95192 1.02664 1.03148 1.21644 0.93886 0.98091 0.88958 0.89620 1.21694 0.92273 1.02153 0.97964 1.21167 0.95587 0.96057 0.86840 1.45950 1.07371 1.56651 1.26827 1.21324 0.82246 0.79394 0.87284 1.90699 1.56778 1.47911 1.51601 1.20744 0.96199 0.97039 0.92932 1.21853 1.02413 0.92224 1.03034 1.22027 1.01722 1.00479 0.95551 1.22343 0.92714 0.98062 0.98259 1.23060 0.99280 0.96260 0.99374 1.22785 0.96889 0.97272 1.00762 1.23027 0.98359 0.97733 0.96851 1.60192 1.58924 1.09262 1.03189 1.21625 1.01611 0.95369 0.88273 1.21082 0.82467 0.87995 0.84976 1.90543 1.55326 1.18816 1.85252 1.42046 1.60674 1.11771 1.08875 1.19001 1.42549 0.96001 0.88299 0.92840 1.26153 0.96405 1.05148 0.93858 1.69807 1.46282 1.39642 1.01781 0.85345 0.79561 0.76335 0.80147 1.17773 1.19993 1.15696 0.89779 0.92282 0.92838 0.90870 0.88002 0.93228 0.94091 0.74956 0.90546 0.89071 0.94212 0.92630 0.89004 0.90149 0.92117 0.88637 0.94376 0.91103 0.89918 0.91126 0.87450 0.83598 0.87570 0.90292 0.77496 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 9.16 71.98 0.66 -1.86 16 2 C 0.08 1.57 2.59 44.91 0.12 1.69 16 3 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 4 C -0.10 -1.63 5.01 30.59 0.15 -1.47 16 5 C 0.13 3.00 5.56 86.38 0.48 3.48 16 6 N -0.72 -13.85 5.35 -463.06 -2.48 -16.33 16 7 C 0.51 12.63 6.42 87.65 0.56 13.19 16 8 O -0.59 -21.40 15.77 -3.04 -0.05 -21.45 16 9 C -0.07 -1.06 0.53 -52.93 -0.03 -1.09 16 10 C -0.14 -1.74 8.22 71.98 0.59 -1.14 16 11 C -0.14 -1.30 7.36 71.98 0.53 -0.77 16 12 C -0.09 -1.79 2.43 -10.26 -0.02 -1.81 16 13 C -0.14 -2.66 7.10 31.12 0.22 -2.44 16 14 C -0.14 -1.96 8.08 31.12 0.25 -1.71 16 15 C -0.12 -1.47 6.70 31.12 0.21 -1.26 16 16 N -0.68 -19.71 5.33 -495.57 -2.64 -22.35 16 17 C 0.06 1.99 5.97 85.56 0.51 2.50 16 18 C 0.45 20.92 7.82 87.66 0.69 21.60 16 19 O -0.61 -35.33 15.78 -3.08 -0.05 -35.38 16 20 N -0.59 -28.94 5.09 -306.99 -1.56 -30.51 16 21 C -0.33 -19.92 10.16 84.04 0.85 -19.07 16 22 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 24 N -0.93 -57.72 13.96 21.66 0.30 -57.42 16 25 Si 0.97 39.90 27.74 68.60 1.90 41.80 16 26 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.23 -8.23 6.52 99.48 0.65 -7.59 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.05 0.83 7.45 -2.39 -0.02 0.81 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.37 7.75 -2.38 -0.02 1.35 16 36 H 0.41 4.74 7.44 -92.71 -0.69 4.05 16 37 H 0.08 0.69 7.57 -2.39 -0.02 0.67 16 38 H 0.09 0.75 7.59 -2.39 -0.02 0.73 16 39 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.05 0.64 6.45 -2.39 -0.02 0.62 16 41 H 0.09 0.50 6.01 -2.39 -0.01 0.49 16 42 H 0.08 0.43 7.75 -2.38 -0.02 0.41 16 43 H 0.06 1.55 8.00 -2.39 -0.02 1.53 16 44 H 0.10 1.49 5.71 -2.39 -0.01 1.47 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.11 0.80 6.04 -2.39 -0.01 0.78 16 50 H 0.34 10.61 8.17 -89.70 -0.73 9.87 16 51 H 0.11 2.96 8.05 -2.39 -0.02 2.94 16 52 H 0.08 1.97 7.44 -2.39 -0.02 1.95 16 53 H 0.39 15.78 5.76 -92.70 -0.53 15.25 16 54 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -87.54 420.43 0.56 -86.98 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -1.10 Total: 45.32 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.24 Total: 9.32 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -6.38 Total: -126.60 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -0.10 Total: -56.83 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.90 Total: 41.80 kcal Total: -87.54 0.56 -86.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567224014.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.783 kcal (2) G-P(sol) polarization free energy of solvation -87.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds