Wall clock time and date at job start Sat Apr 11 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47405 * 2 1 4 4 C 1.52998 * 109.47349 * 120.00034 * 2 1 3 5 5 C 1.53004 * 109.47237 * 184.99545 * 4 2 1 6 6 N 1.46500 * 109.47263 * 179.97438 * 5 4 2 7 7 C 1.34767 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00162 * 359.72913 * 7 6 5 9 9 C 1.50702 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47078 * 299.99886 * 9 7 6 11 11 C 1.52998 * 109.47307 * 60.00159 * 9 7 6 12 12 C 1.53005 * 109.47079 * 180.02562 * 9 7 6 13 13 C 1.53784 * 113.61165 * 282.06005 * 12 9 7 14 14 C 1.53784 * 87.07732 * 220.01828 * 13 12 9 15 15 C 1.53780 * 87.08416 * 25.43350 * 14 13 12 16 16 N 1.46899 * 109.47198 * 240.00268 * 2 1 3 17 17 C 1.46902 * 111.00132 * 84.99622 * 16 2 1 18 18 C 1.50699 * 109.47306 * 180.02562 * 17 16 2 19 19 O 1.21301 * 119.99856 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00171 * 180.02562 * 18 17 16 21 21 C 1.37103 * 120.00016 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99631 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99871 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00100 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46866 * 90.00633 * 25 23 21 27 27 H 1.48504 * 109.47198 * 210.00262 * 25 23 21 28 28 H 1.48497 * 109.47322 * 330.00069 * 25 23 21 29 29 H 1.08998 * 109.47335 * 59.99645 * 1 2 3 30 30 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46760 * 299.99598 * 1 2 3 32 32 H 1.09000 * 109.46963 * 65.00312 * 4 2 1 33 33 H 1.08995 * 109.47355 * 304.99904 * 4 2 1 34 34 H 1.09000 * 109.46518 * 60.00494 * 5 4 2 35 35 H 1.08995 * 109.47241 * 300.00428 * 5 4 2 36 36 H 0.97007 * 119.99503 * 0.02562 * 6 5 4 37 37 H 1.09000 * 109.46817 * 60.00157 * 10 9 7 38 38 H 1.08998 * 109.46996 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47302 * 299.99876 * 10 9 7 40 40 H 1.08999 * 109.47375 * 53.46917 * 11 9 7 41 41 H 1.08998 * 109.47382 * 173.46555 * 11 9 7 42 42 H 1.08999 * 109.46949 * 293.46351 * 11 9 7 43 43 H 1.08997 * 112.84950 * 53.36501 * 12 9 7 44 44 H 1.08995 * 113.61458 * 334.56692 * 13 12 9 45 45 H 1.08998 * 113.61257 * 105.47125 * 13 12 9 46 46 H 1.09003 * 113.61735 * 270.88194 * 14 13 12 47 47 H 1.09003 * 113.61016 * 139.98288 * 14 13 12 48 48 H 1.08998 * 113.61379 * 220.01603 * 15 14 13 49 49 H 1.09000 * 113.69018 * 89.12214 * 15 14 13 50 50 H 1.00906 * 110.99684 * 321.04706 * 16 2 1 51 51 H 1.08997 * 109.47458 * 300.00206 * 17 16 2 52 52 H 1.09005 * 109.46951 * 60.00720 * 17 16 2 53 53 H 0.96995 * 119.99954 * 359.97438 * 20 18 17 54 54 H 0.97001 * 119.99998 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3034 2.5100 7 6 5.3740 -1.3387 2.7757 8 8 6.1588 -0.8034 2.0217 9 6 5.8764 -2.0491 4.0062 10 6 5.2658 -1.4045 5.2522 11 6 5.4722 -3.5235 3.9447 12 6 7.4011 -1.9400 4.0713 13 6 8.1290 -2.9100 3.1257 14 6 9.1461 -3.1270 4.2585 15 6 8.0261 -2.7288 5.2341 16 7 2.0197 -0.6924 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5873 -0.5217 -3.5561 19 8 2.8669 -1.6989 -3.4705 20 7 2.7281 0.1206 -4.7325 21 6 3.1870 -0.5567 -5.8327 22 1 3.4359 -1.6049 -5.7565 23 6 3.3317 0.1054 -7.0457 24 7 3.0292 1.3809 -7.1383 25 14 3.9575 -0.8173 -8.5445 26 1 2.8081 -1.3994 -9.2830 27 1 4.6923 0.1199 -9.4317 28 1 4.8696 -1.9058 -8.1105 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9995 -1.0728 0.4258 36 1 3.4259 -1.7350 3.1110 37 1 4.1795 -1.4818 5.2060 38 1 5.6295 -1.9180 6.1422 39 1 5.5538 -0.3541 5.2961 40 1 5.8086 -3.9534 3.0012 41 1 5.9325 -4.0613 4.7735 42 1 4.3877 -3.6062 4.0156 43 1 7.7553 -0.9116 4.0012 44 1 7.5493 -3.8006 2.8829 45 1 8.5524 -2.4264 2.2454 46 1 9.9785 -2.4234 4.2387 47 1 9.4686 -4.1629 4.3633 48 1 8.3664 -2.0989 6.0560 49 1 7.4175 -3.5690 5.5687 50 1 1.4495 -1.4979 -1.4101 51 1 1.0870 0.6164 -2.5526 52 1 2.7589 1.0463 -2.1183 53 1 2.5042 1.0619 -4.8010 54 1 3.1306 1.8431 -7.9850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567224016.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:34 Heat of formation + Delta-G solvation = -97.562420 kcal Electronic energy + Delta-G solvation = -29792.918055 eV Core-core repulsion = 25763.443835 eV Total energy + Delta-G solvation = -4029.474221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.64332 -40.24962 -39.44957 -38.25606 -36.09118 -35.79177 -34.90079 -33.32546 -32.43071 -29.69584 -28.42663 -27.97146 -26.66970 -26.17174 -25.84413 -24.77233 -23.03008 -21.86114 -21.16951 -20.79617 -19.93862 -19.37331 -17.96165 -17.72297 -17.23037 -16.89108 -16.68796 -16.40855 -16.21477 -16.05285 -15.75780 -15.61457 -15.29336 -15.07275 -14.62819 -14.39008 -14.09578 -13.95305 -13.76112 -13.63170 -13.54812 -13.50859 -13.10972 -13.07587 -12.85662 -12.77245 -12.66671 -12.54462 -12.44701 -12.31178 -12.22966 -12.18593 -12.11371 -12.01822 -11.73715 -11.52522 -11.26462 -11.25401 -10.93969 -10.53055 -10.35906 -10.03719 -10.02034 -9.24942 -8.48712 -5.97594 1.35880 1.39287 1.52548 1.72302 2.03366 2.26145 2.27645 2.93931 3.18360 3.54130 3.54799 3.68091 3.71405 3.87957 3.95558 4.00849 4.11899 4.15556 4.22527 4.30273 4.32635 4.37797 4.44468 4.48676 4.55902 4.59901 4.69625 4.74747 4.82896 4.83669 4.87138 4.90385 4.97276 4.98491 5.03515 5.06199 5.12317 5.17716 5.19729 5.24646 5.28435 5.31966 5.36997 5.38607 5.43704 5.54369 5.66753 5.90550 6.13565 6.46547 6.58101 6.64522 7.10467 7.35967 7.54096 8.09646 8.68779 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.002117 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.926818 B =13225.613372 C =15000.871169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.081 0.919 4 C -0.101 4.101 5 C 0.128 3.872 6 N -0.715 5.715 7 C 0.510 3.490 8 O -0.591 6.591 9 C -0.066 4.066 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.090 4.090 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.120 4.120 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.268 1.268 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.414 0.586 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.345 0.655 51 H 0.068 0.932 52 H 0.096 0.904 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 -4.628 30.489 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.139 4.139 5 C 0.004 3.996 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.470 6.470 9 C -0.069 4.069 10 C -0.192 4.192 11 C -0.201 4.201 12 C -0.109 4.109 13 C -0.187 4.187 14 C -0.177 4.177 15 C -0.157 4.157 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.193 1.193 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.122 0.878 50 H 0.164 0.836 51 H 0.086 0.914 52 H 0.114 0.886 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.149 -4.796 30.000 30.381 hybrid contribution -0.709 0.408 -1.690 1.877 sum -0.560 -4.388 28.310 28.654 Atomic orbital electron populations 1.22424 0.95234 1.02725 1.02994 1.21644 0.93894 0.97984 0.89204 0.90110 1.21682 0.92289 1.02198 0.97773 1.21150 0.95577 0.95976 0.86909 1.45942 1.07411 1.56624 1.26767 1.21345 0.82207 0.79298 0.87418 1.90701 1.56736 1.48087 1.51517 1.20753 0.96235 0.97192 0.92746 1.21837 1.01403 1.00356 0.95582 1.22040 1.02837 0.92228 1.02989 1.22339 0.92010 0.98570 0.98018 1.23088 0.98937 0.99739 0.96969 1.22794 0.96733 1.02104 0.96060 1.23003 0.96850 1.00137 0.95668 1.60204 1.58695 1.09150 1.03042 1.21521 1.00889 0.95306 0.88835 1.20960 0.83385 0.88052 0.85213 1.90488 1.56649 1.18393 1.85479 1.41946 1.58384 1.12578 1.08255 1.19656 1.42273 0.95901 0.88546 0.90474 1.26062 0.97225 0.96664 1.01441 1.69674 1.48675 1.09632 1.28138 0.84923 0.78478 0.77789 0.77112 1.19315 1.19462 1.19999 0.93236 0.92031 0.89727 0.90634 0.88005 0.93459 0.94027 0.74925 0.90424 0.89161 0.93286 0.93591 0.88841 0.90253 0.91291 0.89448 0.94678 0.90717 0.90320 0.90431 0.87762 0.83619 0.91400 0.88561 0.77005 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.08 1.75 2.59 44.91 0.12 1.87 16 3 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 4 C -0.10 -1.76 5.01 30.60 0.15 -1.60 16 5 C 0.13 3.18 5.56 86.38 0.48 3.66 16 6 N -0.72 -14.41 5.35 -463.07 -2.48 -16.89 16 7 C 0.51 12.91 6.42 87.66 0.56 13.48 16 8 O -0.59 -21.83 15.76 -3.04 -0.05 -21.87 16 9 C -0.07 -1.08 0.53 -52.93 -0.03 -1.11 16 10 C -0.13 -1.37 8.22 71.98 0.59 -0.78 16 11 C -0.14 -1.74 7.36 71.98 0.53 -1.21 16 12 C -0.09 -1.71 2.43 -10.26 -0.02 -1.74 16 13 C -0.15 -3.21 7.10 31.12 0.22 -2.99 16 14 C -0.14 -2.14 8.08 31.12 0.25 -1.88 16 15 C -0.12 -1.44 6.70 31.12 0.21 -1.23 16 16 N -0.68 -21.22 5.33 -495.58 -2.64 -23.86 16 17 C 0.07 2.37 5.97 85.56 0.51 2.88 16 18 C 0.44 21.62 7.82 87.66 0.69 22.30 16 19 O -0.62 -35.89 15.78 -3.10 -0.05 -35.94 16 20 N -0.57 -30.65 5.29 -306.97 -1.62 -32.27 16 21 C -0.33 -19.66 9.68 84.04 0.81 -18.85 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.98 13.05 21.66 0.28 -50.70 16 25 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 29 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 36 H 0.41 5.01 7.44 -92.70 -0.69 4.32 16 37 H 0.08 0.51 7.56 -2.39 -0.02 0.49 16 38 H 0.09 0.57 7.59 -2.39 -0.02 0.55 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 0.76 6.45 -2.39 -0.02 0.75 16 41 H 0.09 0.73 6.01 -2.39 -0.01 0.71 16 42 H 0.08 0.65 7.75 -2.39 -0.02 0.64 16 43 H 0.07 1.64 8.01 -2.39 -0.02 1.62 16 44 H 0.09 1.76 5.72 -2.39 -0.01 1.75 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.10 0.85 6.04 -2.39 -0.01 0.83 16 50 H 0.34 11.25 8.17 -89.69 -0.73 10.52 16 51 H 0.07 2.08 7.44 -2.39 -0.02 2.06 16 52 H 0.10 3.22 8.06 -2.38 -0.02 3.20 16 53 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 54 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -79.28 423.55 0.43 -78.85 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -1.24 Total: 46.14 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.20 Total: 10.22 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.46 Total: -123.71 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -0.10 Total: -57.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -79.28 0.43 -78.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567224016.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.710 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds