Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47009 * 2 1 4 4 C 1.52999 * 109.47364 * 119.99408 * 2 1 3 5 5 N 1.46894 * 109.47584 * 295.00607 * 4 2 1 6 6 C 1.47016 * 110.99781 * 293.63630 * 5 4 2 7 7 C 1.53100 * 109.26036 * 177.60881 * 6 5 4 8 8 O 1.43020 * 109.25980 * 56.83984 * 7 6 5 9 9 C 1.43010 * 113.73661 * 301.33305 * 8 7 6 10 10 C 1.47012 * 111.00384 * 169.99535 * 5 4 2 11 11 C 1.50697 * 109.47338 * 240.00179 * 2 1 3 12 12 O 1.21282 * 119.99547 * 274.27499 * 11 2 1 13 13 N 1.34769 * 120.00430 * 94.27280 * 11 2 1 14 14 C 1.47024 * 125.65113 * 355.10002 * 13 11 2 15 15 C 1.54320 * 107.27601 * 178.90229 * 14 13 11 16 16 C 1.55158 * 102.93960 * 337.80725 * 15 14 13 17 17 H 1.09005 * 110.99908 * 277.42583 * 16 15 14 18 18 C 1.52995 * 111.03758 * 153.59477 * 16 15 14 19 19 N 1.46497 * 109.47495 * 69.60111 * 18 16 15 20 20 C 1.46500 * 120.00042 * 90.00289 * 19 18 16 21 21 C 1.36944 * 119.99875 * 269.99977 * 19 18 16 22 22 H 1.08004 * 119.99652 * 24.25822 * 21 19 18 23 23 C 1.38814 * 119.99811 * 204.25428 * 21 19 18 24 24 N 1.31617 * 120.00212 * 9.86621 * 23 21 19 25 25 Si 1.86800 * 119.99633 * 189.86536 * 23 21 19 26 26 H 1.48495 * 109.47302 * 90.00195 * 25 23 21 27 27 H 1.48498 * 109.46915 * 210.00117 * 25 23 21 28 28 H 1.48499 * 109.47176 * 329.99941 * 25 23 21 29 29 C 1.47423 * 125.64859 * 175.05088 * 13 11 2 30 30 H 1.08996 * 109.46659 * 185.00907 * 1 2 3 31 31 H 1.08999 * 109.47069 * 305.01394 * 1 2 3 32 32 H 1.08997 * 109.46627 * 65.01446 * 1 2 3 33 33 H 1.09010 * 109.46836 * 55.00285 * 4 2 1 34 34 H 1.08998 * 109.47582 * 174.99942 * 4 2 1 35 35 H 1.09004 * 109.50298 * 297.53690 * 6 5 4 36 36 H 1.09002 * 109.51140 * 57.66809 * 6 5 4 37 37 H 1.09002 * 109.50396 * 296.91146 * 7 6 5 38 38 H 1.08996 * 109.50748 * 176.78202 * 7 6 5 39 39 H 1.08997 * 109.51235 * 298.73404 * 9 8 7 40 40 H 1.09004 * 109.53668 * 178.62443 * 9 8 7 41 41 H 1.08995 * 109.50622 * 302.32627 * 10 5 4 42 42 H 1.08999 * 109.50246 * 62.41458 * 10 5 4 43 43 H 1.09004 * 109.87672 * 298.32048 * 14 13 11 44 44 H 1.08999 * 109.88247 * 59.32307 * 14 13 11 45 45 H 1.08995 * 110.71844 * 219.44344 * 15 14 13 46 46 H 1.09000 * 110.72317 * 96.16516 * 15 14 13 47 47 H 1.09004 * 109.47528 * 189.60570 * 18 16 15 48 48 H 1.08999 * 109.47176 * 309.59733 * 18 16 15 49 49 H 1.08998 * 109.47431 * 85.79288 * 20 19 18 50 50 H 1.09006 * 109.46882 * 205.79266 * 20 19 18 51 51 H 1.09000 * 109.46813 * 325.78784 * 20 19 18 52 52 H 0.96994 * 119.99687 * 179.97438 * 24 23 21 53 53 H 1.08998 * 110.37054 * 85.33079 * 29 13 11 54 54 H 1.09002 * 110.37344 * 323.00566 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.3403 1.3354 2.4933 7 6 1.8627 2.1159 3.7207 8 8 2.0960 1.3355 4.8962 9 6 1.4392 0.0652 4.8837 10 6 1.9127 -0.7362 3.6681 11 6 2.0324 -0.7103 -1.2304 12 8 2.1607 -1.9163 -1.2244 13 7 2.3391 -0.0056 -2.3375 14 6 2.1363 1.4395 -2.5169 15 6 2.6572 1.8043 -3.9230 16 6 3.6422 0.6479 -4.2394 17 1 4.6168 0.8300 -3.7864 18 6 3.7734 0.4358 -5.7489 19 7 4.4844 1.5713 -6.3417 20 6 5.9444 1.5413 -6.4581 21 6 3.7842 2.6606 -6.7870 22 1 2.8094 2.8805 -6.3771 23 6 4.3273 3.4823 -7.7652 24 7 5.4184 3.1142 -8.4025 25 14 3.5094 5.1105 -8.1769 26 1 4.0747 6.1801 -7.3158 27 1 3.7558 5.4415 -9.6034 28 1 2.0475 5.0043 -7.9388 29 6 2.9344 -0.5558 -3.5688 30 1 -0.3632 -1.0237 0.0897 31 1 -0.3633 0.5896 0.8417 32 1 -0.3632 0.4341 -0.9315 33 1 1.6055 -1.7198 1.2952 34 1 3.1264 -0.7994 1.2057 35 1 3.4163 1.1741 2.5607 36 1 2.1124 1.9019 1.5903 37 1 0.7967 2.3238 3.6276 38 1 2.4123 3.0544 3.7918 39 1 0.3610 0.2134 4.8243 40 1 1.6821 -0.4798 5.7959 41 1 1.3726 -1.6818 3.6227 42 1 2.9817 -0.9312 3.7538 43 1 1.0751 1.6770 -2.4416 44 1 2.6937 1.9890 -1.7584 45 1 3.1789 2.7611 -3.9047 46 1 1.8401 1.8230 -4.6442 47 1 4.3304 -0.4815 -5.9399 48 1 2.7808 0.3570 -6.1924 49 1 6.2250 1.0340 -7.3811 50 1 6.3287 2.5613 -6.4729 51 1 6.3659 1.0066 -5.6069 52 1 5.7976 3.6882 -9.0863 53 1 2.1567 -0.9508 -4.2226 54 1 3.6579 -1.3339 -3.3257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567742821.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -70.943148 kcal Electronic energy + Delta-G solvation = -30686.766457 eV Core-core repulsion = 26658.446535 eV Total energy + Delta-G solvation = -4028.319922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43493 -40.45122 -39.05365 -37.27120 -37.03197 -34.34981 -33.63164 -32.13301 -31.99646 -30.34412 -28.97930 -27.96349 -27.33718 -26.11636 -25.02468 -24.56156 -23.17673 -22.62981 -21.28125 -21.06522 -19.78876 -18.73603 -18.56773 -17.42976 -17.19901 -17.07936 -16.76407 -16.42391 -16.26457 -15.99011 -15.74695 -15.57772 -15.19412 -15.12722 -14.80931 -14.60756 -14.46512 -14.37643 -13.90066 -13.67923 -13.59548 -13.32329 -13.09439 -13.05084 -12.95127 -12.82710 -12.63569 -12.58850 -12.35637 -12.32123 -12.23077 -12.13139 -11.98265 -11.84124 -11.71446 -11.56461 -11.46234 -11.36651 -10.83097 -10.65845 -10.54771 -9.68527 -9.47782 -8.69933 -7.78686 -5.26175 1.50735 1.51141 1.53050 1.59635 1.90279 2.55018 2.71053 2.97755 3.36893 3.41941 3.58706 3.69663 3.76124 3.88613 3.93424 3.99188 4.04152 4.15766 4.20425 4.24437 4.27481 4.33497 4.35658 4.44678 4.59777 4.60911 4.62946 4.65052 4.72540 4.74603 4.82811 4.84684 4.87571 4.90424 4.90756 4.93721 5.00363 5.02513 5.07081 5.13039 5.25882 5.31992 5.33088 5.43049 5.51253 5.67268 5.75544 5.82663 5.89451 6.19779 6.39945 6.51115 7.07496 7.20772 7.91929 8.38224 9.27286 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002193 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.509084 B =12761.988482 C =13480.997996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 H 0.107 0.893 4 C 0.081 3.919 5 N -0.530 5.530 6 C 0.010 3.990 7 C 0.064 3.936 8 O -0.408 6.408 9 C 0.065 3.935 10 C 0.016 3.984 11 C 0.528 3.472 12 O -0.587 6.587 13 N -0.616 5.616 14 C 0.104 3.896 15 C -0.108 4.108 16 C -0.105 4.105 17 H 0.066 0.934 18 C 0.161 3.839 19 N -0.615 5.615 20 C 0.176 3.824 21 C -0.244 4.244 22 H 0.082 0.918 23 C -0.062 4.062 24 N -0.946 5.946 25 Si 0.966 3.034 26 H -0.287 1.287 27 H -0.303 1.303 28 H -0.264 1.264 29 C 0.116 3.884 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.033 0.967 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.049 0.951 49 H -0.009 1.009 50 H 0.033 0.967 51 H 0.019 0.981 52 H 0.245 0.755 53 H 0.069 0.931 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.675 -3.485 25.314 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 H 0.125 0.875 4 C -0.047 4.047 5 N -0.255 5.255 6 C -0.118 4.118 7 C -0.013 4.013 8 O -0.327 6.327 9 C -0.012 4.012 10 C -0.112 4.112 11 C 0.317 3.683 12 O -0.468 6.468 13 N -0.348 5.348 14 C -0.018 4.018 15 C -0.146 4.146 16 C -0.126 4.126 17 H 0.085 0.915 18 C 0.034 3.966 19 N -0.338 5.338 20 C 0.031 3.969 21 C -0.374 4.374 22 H 0.100 0.900 23 C -0.256 4.256 24 N -0.594 5.594 25 Si 0.795 3.205 26 H -0.214 1.214 27 H -0.230 1.230 28 H -0.188 1.188 29 C -0.008 4.008 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.051 0.949 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.009 0.991 50 H 0.051 0.949 51 H 0.038 0.962 52 H 0.054 0.946 53 H 0.087 0.913 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.944 -3.921 25.388 27.924 hybrid contribution 1.071 0.368 -1.214 1.661 sum -9.873 -3.554 24.174 26.353 Atomic orbital electron populations 1.21544 0.90507 1.02665 1.03160 1.21225 0.99559 1.00564 0.90049 0.87541 1.21781 0.97281 0.97234 0.88446 1.62199 1.57527 1.04050 1.01686 1.22954 0.96319 0.91512 1.01004 1.22780 1.01689 0.93993 0.82818 1.87966 1.73593 1.30294 1.40871 1.22769 0.97225 0.83509 0.97663 1.22847 0.99799 0.98286 0.90255 1.20857 0.76477 0.86784 0.84137 1.90666 1.55846 1.16004 1.84295 1.48691 1.61395 1.10476 1.14255 1.22261 1.02146 0.79341 0.98078 1.22489 0.98484 0.98804 0.94856 1.22824 0.98107 0.94178 0.97529 0.91532 1.20735 0.96153 0.89221 0.90487 1.44087 1.02239 1.16945 1.70503 1.20519 0.83304 0.98615 0.94457 1.19599 1.01875 1.01886 1.14031 0.89989 1.25852 0.99194 1.03197 0.97325 1.70234 1.24349 1.37851 1.26940 0.85273 0.78785 0.80254 0.76211 1.21377 1.23020 1.18850 1.22159 0.96841 0.96434 0.85338 0.93161 0.89077 0.92257 0.90321 0.95910 0.95006 0.88103 0.91346 0.87157 0.91496 0.86997 0.88497 0.94899 0.89305 0.89903 0.90523 0.91106 0.93943 0.93219 0.99115 0.94864 0.96232 0.94592 0.91318 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.00 71.98 0.65 -1.24 16 2 C -0.09 -1.69 2.27 -11.54 -0.03 -1.71 16 3 H 0.11 1.58 5.08 -2.39 -0.01 1.57 16 4 C 0.08 1.53 3.91 86.30 0.34 1.87 16 5 N -0.53 -8.05 4.27 -895.21 -3.82 -11.88 16 6 C 0.01 0.14 5.44 86.31 0.47 0.61 16 7 C 0.06 0.80 7.01 72.02 0.50 1.30 16 8 O -0.41 -6.77 10.83 -148.98 -1.61 -8.38 16 9 C 0.07 0.79 7.01 72.02 0.50 1.30 16 10 C 0.02 0.22 5.65 86.32 0.49 0.71 16 11 C 0.53 13.87 6.85 87.66 0.60 14.47 16 12 O -0.59 -20.05 16.65 -3.04 -0.05 -20.10 16 13 N -0.62 -15.62 3.33 -811.81 -2.70 -18.32 16 14 C 0.10 2.14 6.21 86.73 0.54 2.68 16 15 C -0.11 -2.96 5.18 31.78 0.16 -2.80 16 16 C -0.10 -3.22 3.27 -9.40 -0.03 -3.25 16 17 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 18 C 0.16 6.05 5.21 86.38 0.45 6.50 16 19 N -0.61 -29.11 2.89 -726.93 -2.10 -31.21 16 20 C 0.18 8.58 8.99 127.77 1.15 9.73 16 21 C -0.24 -12.38 9.09 84.03 0.76 -11.62 16 22 H 0.08 3.90 6.83 -2.91 -0.02 3.88 16 23 C -0.06 -3.33 5.11 84.86 0.43 -2.90 16 24 N -0.95 -55.19 10.67 21.65 0.23 -54.96 16 25 Si 0.97 43.34 29.56 68.60 2.03 45.37 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 29 C 0.12 3.27 6.36 86.86 0.55 3.82 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.17 7.89 -2.39 -0.02 1.15 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.65 7.91 -2.38 -0.02 1.64 16 34 H 0.02 0.50 8.12 -2.39 -0.02 0.48 16 35 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 1.13 6.29 -2.39 -0.02 1.12 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 42 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 1.44 7.62 -2.39 -0.02 1.42 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 2.03 7.59 -2.39 -0.02 2.01 16 47 H 0.04 1.55 8.07 -2.38 -0.02 1.53 16 48 H 0.05 1.87 7.94 -2.39 -0.02 1.85 16 49 H -0.01 -0.51 7.84 -2.39 -0.02 -0.52 16 50 H 0.03 1.76 6.70 -2.38 -0.02 1.75 16 51 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 52 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 53 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 54 H 0.06 1.90 8.09 -2.39 -0.02 1.88 16 Total: -1.00 -67.07 414.15 0.36 -66.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.85 Total: 13.30 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.55 Total: 19.47 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -8.39 Total: -116.37 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.66 Total: -28.48 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.07 0.36 -66.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567742821.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.234 kcal (2) G-P(sol) polarization free energy of solvation -67.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds