Wall clock time and date at job start Sat Apr 11 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.52999 * 109.47084 * 120.00182 * 2 1 3 5 5 N 1.46900 * 109.47357 * 175.24634 * 4 2 1 6 6 C 1.46893 * 111.00021 * 198.99482 * 5 4 2 7 7 C 1.46898 * 111.00023 * 75.03308 * 5 4 2 8 8 C 1.50699 * 109.47155 * 190.00032 * 7 5 4 9 9 O 1.21290 * 120.00266 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99623 * 180.02562 * 8 7 5 11 11 C 1.37095 * 119.99661 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00009 * 359.97438 * 11 10 8 13 13 C 1.38958 * 120.00014 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99588 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00022 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47214 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47213 * 120.00065 * 15 13 11 18 18 H 1.48504 * 109.46999 * 239.99791 * 15 13 11 19 19 N 1.46506 * 109.47118 * 240.00051 * 2 1 3 20 20 C 1.34777 * 119.99774 * 82.88296 * 19 2 1 21 21 O 1.21272 * 120.00174 * 359.97438 * 20 19 2 22 22 C 1.50700 * 119.99827 * 180.02562 * 20 19 2 23 23 C 1.53004 * 109.47375 * 59.99709 * 22 20 19 24 24 C 1.52999 * 109.46939 * 299.99875 * 22 20 19 25 25 C 1.52996 * 109.47368 * 300.00009 * 24 22 20 26 26 C 1.53005 * 109.47105 * 300.00413 * 25 24 22 27 27 C 1.52999 * 109.47345 * 59.99573 * 26 25 24 28 28 C 1.52996 * 109.46997 * 179.97438 * 22 20 19 29 29 H 1.08994 * 109.47378 * 299.99796 * 1 2 3 30 30 H 1.09000 * 109.47194 * 60.00054 * 1 2 3 31 31 H 1.09004 * 109.47593 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47129 * 295.24560 * 4 2 1 33 33 H 1.09010 * 109.47044 * 55.24744 * 4 2 1 34 34 H 1.08995 * 109.47783 * 54.13919 * 6 5 4 35 35 H 1.09005 * 109.47065 * 174.13771 * 6 5 4 36 36 H 1.08995 * 109.47070 * 294.13290 * 6 5 4 37 37 H 1.08996 * 109.47460 * 310.01015 * 7 5 4 38 38 H 1.09002 * 109.46727 * 70.00220 * 7 5 4 39 39 H 0.96999 * 120.00090 * 0.02562 * 10 8 7 40 40 H 0.97003 * 119.99578 * 180.02562 * 14 13 11 41 41 H 0.96999 * 120.00185 * 262.61352 * 19 2 1 42 42 H 1.08997 * 109.46787 * 60.00258 * 23 22 20 43 43 H 1.08994 * 109.46941 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.47162 * 300.00268 * 23 22 20 45 45 H 1.09004 * 109.47208 * 60.00175 * 24 22 20 46 46 H 1.09004 * 109.47284 * 180.02562 * 24 22 20 47 47 H 1.09005 * 109.47496 * 179.97438 * 25 24 22 48 48 H 1.09004 * 109.47167 * 60.00169 * 25 24 22 49 49 H 1.09004 * 109.46399 * 299.99342 * 26 25 24 50 50 H 1.08999 * 109.46680 * 179.97438 * 26 25 24 51 51 H 1.08995 * 109.47110 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.46838 * 60.00298 * 27 26 25 53 53 H 1.09004 * 109.47044 * 179.97438 * 28 22 20 54 54 H 1.08997 * 109.47427 * 299.99902 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5045 -0.8215 1.1933 6 6 3.9958 -1.8659 2.1019 7 6 4.1325 0.4729 1.4902 8 6 5.6065 0.3975 1.1862 9 8 6.0867 -0.6329 0.7633 10 7 6.3913 1.4752 1.3843 11 6 7.7323 1.4068 1.1073 12 1 8.1598 0.4893 0.7307 13 6 8.5415 2.5177 1.3120 14 7 8.0215 3.6336 1.7716 15 14 10.3687 2.4244 0.9352 16 1 10.7022 1.0666 0.4347 17 1 10.7129 3.4323 -0.0996 18 1 11.1438 2.6999 2.1716 19 7 2.0183 -0.6906 -1.1962 20 6 2.1066 -0.0293 -2.3673 21 8 1.7814 1.1373 -2.4309 22 6 2.6084 -0.7398 -3.5979 23 6 1.6934 -1.9255 -3.9110 24 6 4.0312 -1.2450 -3.3505 25 6 4.9462 -0.0595 -3.0374 26 6 4.9478 0.9101 -4.2211 27 6 3.5249 1.4153 -4.4685 28 6 2.6094 0.2294 -4.7816 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7478 -0.1607 2.1372 33 1 1.6087 -1.7215 1.2928 34 1 3.4900 -2.8061 1.8823 35 1 5.0700 -1.9907 1.9650 36 1 3.7921 -1.5759 3.1326 37 1 3.6740 1.2484 0.8767 38 1 3.9906 0.7122 2.5441 39 1 6.0074 2.2991 1.7229 40 1 8.5864 4.4092 1.9142 41 1 2.2818 -1.6227 -1.1446 42 1 0.6798 -1.5656 -4.0872 43 1 2.0567 -2.4397 -4.8008 44 1 1.6923 -2.6162 -3.0678 45 1 4.0301 -1.9358 -2.5072 46 1 4.3944 -1.7586 -4.2408 47 1 5.9598 -0.4194 -2.8607 48 1 4.5833 0.4545 -2.1473 49 1 5.3108 0.3961 -5.1111 50 1 5.5993 1.7549 -3.9978 51 1 3.5260 2.1056 -5.3120 52 1 3.1620 1.9292 -3.5783 53 1 2.9728 -0.2844 -5.6716 54 1 1.5956 0.5890 -4.9577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569135927.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:14 Heat of formation + Delta-G solvation = -112.401347 kcal Electronic energy + Delta-G solvation = -32601.682753 eV Core-core repulsion = 28571.565068 eV Total energy + Delta-G solvation = -4030.117685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72086 -40.38063 -38.85437 -37.75975 -36.08938 -35.52778 -33.96952 -33.26048 -32.01805 -31.12813 -29.58526 -27.95286 -27.31307 -26.60140 -24.61856 -23.60017 -23.40831 -21.93749 -21.48519 -20.82480 -20.27307 -19.83803 -17.93670 -17.36894 -17.26335 -16.64328 -16.60809 -16.40796 -15.91707 -15.71584 -15.46213 -15.31792 -15.13885 -14.99155 -14.81331 -14.63634 -14.22635 -14.08961 -13.71688 -13.46738 -13.38358 -13.12278 -13.08468 -13.07681 -12.92465 -12.86525 -12.78546 -12.71254 -12.62899 -12.45135 -12.39751 -12.35214 -12.13321 -11.93016 -11.70675 -11.55743 -11.43704 -11.03393 -10.92247 -10.33848 -10.23364 -9.98833 -9.81656 -9.18757 -8.46124 -5.94084 1.34578 1.39050 1.53227 1.84785 2.06975 2.26751 2.39298 2.80313 3.21015 3.38405 3.66848 3.71901 3.82939 3.84021 4.06962 4.15284 4.20624 4.27583 4.31303 4.33804 4.43181 4.44844 4.50873 4.53695 4.58417 4.63260 4.67101 4.72174 4.72539 4.79079 4.84155 4.84568 4.94447 4.95665 5.02801 5.12014 5.13812 5.20175 5.24532 5.30977 5.32816 5.37932 5.41069 5.41696 5.41932 5.58595 5.75967 5.89674 6.07699 6.22842 6.60892 6.77622 7.14031 7.48883 7.57581 8.13035 8.72001 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.004129 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.923839 B = 6779.127507 C = 8351.618110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 H 0.049 0.951 4 C 0.049 3.951 5 N -0.524 5.524 6 C 0.028 3.972 7 C 0.058 3.942 8 C 0.447 3.553 9 O -0.602 6.602 10 N -0.579 5.579 11 C -0.324 4.324 12 H 0.080 0.920 13 C -0.016 4.016 14 N -0.925 5.925 15 Si 0.990 3.010 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.270 1.270 19 N -0.697 5.697 20 C 0.522 3.478 21 O -0.582 6.582 22 C -0.075 4.075 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.130 4.130 28 C -0.086 4.086 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.391 0.609 40 H 0.276 0.724 41 H 0.408 0.592 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.043 0.957 48 H 0.023 0.977 49 H 0.079 0.921 50 H 0.038 0.962 51 H 0.064 0.936 52 H 0.056 0.944 53 H 0.089 0.911 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.462 -11.319 -7.336 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.067 0.933 4 C -0.079 4.079 5 N -0.249 5.249 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.234 3.766 9 O -0.487 6.487 10 N -0.217 5.217 11 C -0.454 4.454 12 H 0.098 0.902 13 C -0.215 4.215 14 N -0.566 5.566 15 Si 0.814 3.186 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.195 1.195 19 N -0.348 5.348 20 C 0.310 3.690 21 O -0.462 6.462 22 C -0.078 4.078 23 C -0.191 4.191 24 C -0.130 4.130 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.124 4.124 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.224 0.776 40 H 0.085 0.915 41 H 0.244 0.756 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.098 0.902 50 H 0.057 0.943 51 H 0.082 0.918 52 H 0.075 0.925 53 H 0.107 0.893 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.162 -11.162 -8.057 21.230 hybrid contribution 1.056 1.064 1.247 1.950 sum -15.106 -10.098 -6.811 19.405 Atomic orbital electron populations 1.22026 0.93256 1.03210 1.02271 1.20926 0.94572 0.95956 0.84596 0.93270 1.22564 0.86444 1.02717 0.96179 1.61473 1.05487 1.04211 1.53690 1.22442 1.01869 0.94749 0.92876 1.21708 0.91691 0.93652 1.00251 1.20620 0.89114 0.83977 0.82861 1.90445 1.76360 1.31246 1.50698 1.41967 1.08088 1.12880 1.58743 1.19654 0.84332 0.99151 1.42223 0.90190 1.26021 1.04499 0.94273 0.96679 1.69695 1.38199 1.02781 1.45932 0.84914 0.77176 0.78306 0.78237 1.19545 1.19928 1.19544 1.45771 1.65593 1.15470 1.07932 1.20875 0.76150 0.86466 0.85495 1.90583 1.51409 1.18177 1.86080 1.20868 0.96766 0.97335 0.92873 1.21826 0.98274 0.95361 1.03592 1.21510 0.91975 0.96567 1.02904 1.21375 0.99239 0.97195 0.97281 1.21519 0.97160 0.98252 0.98324 1.21718 0.94578 0.98542 1.01918 1.21357 0.99665 0.94898 0.96454 0.90443 0.93824 0.90364 0.91970 0.87263 0.89216 0.92671 0.95636 0.89712 0.91864 0.77572 0.91502 0.75584 0.92095 0.89583 0.91045 0.91397 0.88915 0.93777 0.95763 0.90197 0.94341 0.91767 0.92539 0.89286 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.46 71.98 0.68 -2.02 16 2 C 0.15 3.40 2.55 44.99 0.11 3.51 16 3 H 0.05 1.52 6.41 -2.39 -0.02 1.50 16 4 C 0.05 1.00 4.54 86.30 0.39 1.39 16 5 N -0.52 -15.39 4.16 -927.08 -3.86 -19.25 16 6 C 0.03 0.80 9.17 127.69 1.17 1.97 16 7 C 0.06 2.10 5.28 85.56 0.45 2.55 16 8 C 0.45 21.48 7.52 87.66 0.66 22.14 16 9 O -0.60 -32.21 13.88 -3.06 -0.04 -32.26 16 10 N -0.58 -30.67 5.29 -306.98 -1.62 -32.30 16 11 C -0.32 -18.72 9.68 84.04 0.81 -17.91 16 12 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 13 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 14 N -0.92 -51.69 13.05 21.67 0.28 -51.41 16 15 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 N -0.70 -16.84 4.62 -442.54 -2.04 -18.88 16 20 C 0.52 14.80 4.90 87.66 0.43 15.23 16 21 O -0.58 -20.96 13.33 -3.01 -0.04 -21.00 16 22 C -0.08 -1.69 0.62 -52.93 -0.03 -1.72 16 23 C -0.13 -1.98 8.37 71.98 0.60 -1.38 16 24 C -0.09 -2.25 4.64 30.59 0.14 -2.11 16 25 C -0.11 -3.81 5.70 30.59 0.17 -3.63 16 26 C -0.12 -3.46 5.92 30.60 0.18 -3.28 16 27 C -0.13 -3.76 5.63 30.61 0.17 -3.59 16 28 C -0.09 -1.98 4.37 30.61 0.13 -1.84 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.98 8.11 -2.39 -0.02 0.96 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.15 8.01 -2.39 -0.02 1.14 16 33 H 0.11 1.63 7.81 -2.38 -0.02 1.61 16 34 H 0.09 1.94 7.94 -2.39 -0.02 1.92 16 35 H 0.05 2.06 5.92 -2.38 -0.01 2.05 16 36 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 37 H 0.08 3.08 6.67 -2.39 -0.02 3.07 16 38 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 39 H 0.39 20.24 7.90 -92.71 -0.73 19.51 16 40 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.41 8.53 7.42 -92.71 -0.69 7.85 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.07 0.90 7.57 -2.39 -0.02 0.89 16 45 H 0.07 1.68 7.56 -2.38 -0.02 1.66 16 46 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.02 0.99 7.22 -2.39 -0.02 0.98 16 49 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 50 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.06 2.06 5.51 -2.39 -0.01 2.05 16 53 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 54 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -72.28 414.32 0.72 -71.55 By element: Atomic # 1 Polarization: 49.06 SS G_CDS: -0.53 Total: 48.53 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.55 Total: 8.92 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -7.24 Total: -121.85 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.08 Total: -53.26 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -72.28 0.72 -71.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569135927.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.851 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds