Wall clock time and date at job start Sat Apr 11 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52992 * 109.47482 * 300.00014 * 4 2 1 7 7 C 1.50708 * 109.47141 * 179.97438 * 4 2 1 8 8 O 1.21277 * 119.99770 * 0.02562 * 7 4 2 9 9 N 1.34773 * 120.00130 * 179.97438 * 7 4 2 10 10 C 1.47489 * 127.03305 * 0.02823 * 9 7 4 11 11 C 1.54005 * 107.08519 * 154.51501 * 10 9 7 12 12 C 1.54619 * 105.04012 * 1.30422 * 11 10 9 13 13 C 1.52998 * 110.74057 * 263.32757 * 12 11 10 14 14 C 1.53005 * 110.73766 * 140.18639 * 12 11 10 15 15 N 1.46907 * 109.46827 * 61.45057 * 14 12 11 16 16 C 1.46906 * 110.99662 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46901 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00063 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99948 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00493 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99582 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00555 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00318 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46708 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47319 * 119.99602 * 24 22 20 27 27 H 1.48497 * 109.47089 * 239.99983 * 24 22 20 28 28 C 1.48113 * 127.03538 * 179.70763 * 9 7 4 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 4 2 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 4 2 38 38 H 1.08996 * 109.47747 * 179.97438 * 6 4 2 39 39 H 1.09001 * 109.91507 * 273.87521 * 10 9 7 40 40 H 1.09006 * 109.91412 * 35.15342 * 10 9 7 41 41 H 1.08998 * 110.32907 * 120.19654 * 11 10 9 42 42 H 1.09002 * 110.32707 * 242.41280 * 11 10 9 43 43 H 1.08997 * 109.46840 * 58.55224 * 13 12 11 44 44 H 1.09002 * 109.47112 * 178.55274 * 13 12 11 45 45 H 1.08997 * 109.47509 * 298.55066 * 13 12 11 46 46 H 1.08997 * 109.47558 * 181.45069 * 14 12 11 47 47 H 1.08997 * 109.47041 * 301.45891 * 14 12 11 48 48 H 1.00894 * 111.00025 * 303.95636 * 15 14 12 49 49 H 1.08998 * 109.46817 * 299.99941 * 16 15 14 50 50 H 1.08995 * 109.47125 * 60.00027 * 16 15 14 51 51 H 0.97008 * 119.99923 * 0.02562 * 19 17 16 52 52 H 0.97000 * 119.99591 * 180.02562 * 23 22 20 53 53 H 1.08994 * 110.66205 * 337.77936 * 28 9 7 54 54 H 1.09006 * 110.65973 * 100.88602 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5300 -2.1636 -1.2494 7 6 3.5470 -0.7207 -1.2497 8 8 4.1534 -0.1956 -0.3400 9 7 4.2208 -1.3046 -2.2603 10 6 3.6453 -1.9840 -3.4361 11 6 4.6922 -1.9034 -4.5627 12 6 5.8998 -1.1684 -3.9364 13 6 5.8622 0.3229 -4.2763 14 6 7.2160 -1.7949 -4.4013 15 7 7.3278 -1.6725 -5.8610 16 6 8.5821 -2.2652 -6.3444 17 6 8.6615 -2.1204 -7.8424 18 8 7.7621 -1.5765 -8.4476 19 7 9.7324 -2.5943 -8.5093 20 6 9.8045 -2.4631 -9.8721 21 1 9.0032 -1.9795 -10.4111 22 6 10.9083 -2.9522 -10.5598 23 7 11.8835 -3.5402 -9.9039 24 14 11.0068 -2.7727 -12.4166 25 1 9.7908 -2.0789 -12.9120 26 1 12.2102 -1.9794 -12.7741 27 1 11.0973 -4.1175 -13.0398 28 6 5.6908 -1.3897 -2.4207 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.8933 -2.6775 -0.3594 37 1 0.4400 -2.1636 -1.2494 38 1 1.8928 -2.6773 -2.1396 39 1 3.4366 -3.0268 -3.1972 40 1 2.7289 -1.4804 -3.7442 41 1 4.9823 -2.9042 -4.8823 42 1 4.2986 -1.3351 -5.4054 43 1 4.9315 0.7557 -3.9097 44 1 6.7070 0.8245 -3.8041 45 1 5.9216 0.4509 -5.3571 46 1 8.0513 -1.2787 -3.9283 47 1 7.2352 -2.8485 -4.1227 48 1 6.5313 -2.0874 -6.3208 49 1 9.4270 -1.7525 -5.8849 50 1 8.6104 -3.3220 -6.0792 51 1 10.4519 -3.0290 -8.0252 52 1 12.6542 -3.8813 -10.3840 53 1 6.1863 -0.6069 -1.8465 54 1 6.0537 -2.3738 -2.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569687614.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:38 Heat of formation + Delta-G solvation = -107.405868 kcal Electronic energy + Delta-G solvation = -30073.925007 eV Core-core repulsion = 26044.023943 eV Total energy + Delta-G solvation = -4029.901065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57827 -40.20539 -39.56177 -37.02461 -36.62706 -35.82742 -33.81973 -33.20533 -31.57353 -30.69628 -28.86971 -28.30619 -27.65565 -26.60126 -25.46227 -24.37007 -23.80125 -21.48050 -21.10226 -20.31131 -19.89677 -19.66506 -18.13730 -17.77398 -17.26176 -16.83153 -16.54852 -16.43687 -16.02797 -15.63537 -15.41939 -15.38435 -15.09342 -15.00722 -14.82587 -14.59553 -14.24928 -14.05297 -13.74284 -13.47253 -13.45128 -13.26102 -13.12682 -13.09417 -12.97572 -12.90083 -12.85438 -12.70628 -12.41339 -12.39429 -12.38806 -12.11000 -11.97041 -11.75596 -11.61912 -11.59967 -11.51219 -11.49282 -11.40742 -10.54679 -10.31753 -9.99829 -9.65766 -9.25758 -8.45721 -5.94219 1.37411 1.42782 1.56739 1.63111 1.95939 2.07499 2.30072 2.92716 3.22005 3.37234 3.53234 3.60584 3.68264 3.81432 3.93910 3.99100 4.20783 4.25136 4.27540 4.29772 4.34853 4.42792 4.50498 4.53168 4.59756 4.60435 4.62143 4.73181 4.73518 4.78676 4.81330 4.86825 4.92035 4.94742 4.95664 5.03577 5.07181 5.10247 5.13993 5.21598 5.27773 5.31853 5.39452 5.42413 5.45592 5.48694 5.55402 5.90577 6.12446 6.47281 6.57771 6.61613 7.14220 7.17529 7.58377 8.13475 8.71855 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.001710 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.551136 B =16373.907985 C =16535.782485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.158 4.158 4 C -0.098 4.098 5 H 0.108 0.892 6 C -0.149 4.149 7 C 0.529 3.471 8 O -0.579 6.579 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.128 4.128 12 C -0.062 4.062 13 C -0.118 4.118 14 C 0.077 3.923 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.115 3.885 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.346 0.654 49 H 0.101 0.899 50 H 0.068 0.932 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.067 0.933 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.421 0.410 19.475 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 C -0.215 4.215 4 C -0.119 4.119 5 H 0.126 0.874 6 C -0.206 4.206 7 C 0.320 3.680 8 O -0.459 6.459 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.063 4.063 13 C -0.176 4.176 14 C -0.052 4.052 15 N -0.310 5.310 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.165 0.835 49 H 0.119 0.881 50 H 0.086 0.914 51 H 0.230 0.770 52 H 0.086 0.914 53 H 0.086 0.914 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.333 1.635 19.589 28.281 hybrid contribution 0.871 -0.869 -0.619 1.378 sum -19.462 0.766 18.970 27.188 Atomic orbital electron populations 1.21884 0.92984 1.02803 1.02423 1.20889 0.96640 0.95667 0.96184 1.22026 1.02015 0.96032 1.01431 1.21381 0.89033 1.00109 1.01345 0.87380 1.21967 1.03098 0.92566 1.02933 1.20936 0.90959 0.76136 0.79979 1.90628 1.71415 1.46671 1.37165 1.48856 1.07501 1.55903 1.22783 1.22370 0.97423 0.98238 0.83931 1.22652 0.94463 1.01589 0.97888 1.21467 0.94735 0.96329 0.93817 1.21554 1.00411 0.93947 1.01655 1.21935 0.97084 0.99139 0.87045 1.60009 1.03464 1.62300 1.05189 1.21523 0.95208 0.99365 0.90658 1.20894 0.83126 0.82645 0.90699 1.90488 1.40752 1.48644 1.70920 1.41949 1.19427 1.52524 1.07310 1.19704 1.05620 1.37362 0.83524 0.90287 1.26026 0.94556 0.95931 1.04794 1.69680 1.09216 1.39106 1.38179 0.84877 0.78209 0.78277 0.77006 1.19775 1.19783 1.19584 1.22379 0.81275 1.02121 0.95059 0.91887 0.91105 0.92321 0.92323 0.92646 0.92777 0.92821 0.93051 0.89260 0.90613 0.89274 0.89089 0.89693 0.90187 0.93631 0.93491 0.92450 0.90636 0.93313 0.83452 0.88128 0.91421 0.77009 0.91365 0.91413 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.84 71.98 0.64 -0.75 16 2 C -0.07 -1.12 2.15 -10.79 -0.02 -1.15 16 3 C -0.16 -2.85 8.87 71.98 0.64 -2.21 16 4 C -0.10 -1.34 1.69 -11.54 -0.02 -1.36 16 5 H 0.11 1.22 7.91 -2.39 -0.02 1.20 16 6 C -0.15 -1.37 8.66 71.98 0.62 -0.75 16 7 C 0.53 10.95 6.96 87.66 0.61 11.56 16 8 O -0.58 -16.62 13.87 -3.02 -0.04 -16.66 16 9 N -0.62 -10.83 3.21 -810.08 -2.60 -13.43 16 10 C 0.10 1.23 5.19 86.53 0.45 1.68 16 11 C -0.13 -1.94 5.14 31.49 0.16 -1.78 16 12 C -0.06 -1.16 0.74 -51.09 -0.04 -1.20 16 13 C -0.12 -2.67 8.30 71.98 0.60 -2.07 16 14 C 0.08 1.60 4.58 86.30 0.40 2.00 16 15 N -0.68 -19.43 5.55 -517.90 -2.88 -22.31 16 16 C 0.06 2.10 6.17 85.56 0.53 2.63 16 17 C 0.44 20.33 7.82 87.66 0.69 21.01 16 18 O -0.62 -33.59 15.78 -3.06 -0.05 -33.64 16 19 N -0.57 -29.06 5.29 -307.00 -1.62 -30.68 16 20 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 23 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 24 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 C 0.11 2.13 5.97 86.61 0.52 2.65 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.51 6.43 -2.39 -0.02 0.50 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.32 5.51 -2.39 -0.01 1.30 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.52 6.43 -2.39 -0.02 0.51 16 38 H 0.08 0.56 5.12 -2.39 -0.01 0.54 16 39 H 0.09 0.78 7.22 -2.39 -0.02 0.76 16 40 H 0.09 0.83 7.38 -2.38 -0.02 0.82 16 41 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 42 H 0.08 1.34 7.86 -2.39 -0.02 1.32 16 43 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.52 7.79 -2.39 -0.02 1.50 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 48 H 0.35 10.22 7.31 -89.70 -0.66 9.56 16 49 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 50 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.40 19.02 7.90 -92.70 -0.73 18.29 16 52 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 53 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 54 H 0.08 1.36 8.03 -2.38 -0.02 1.34 16 Total: -1.00 -70.92 417.25 1.66 -69.26 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.49 Total: 39.77 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 7.04 Total: 12.09 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -6.82 Total: -115.48 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.09 Total: -50.30 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.92 1.66 -69.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569687614.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.148 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds