Wall clock time and date at job start Sat Apr 11 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00080 * 2 1 4 4 C 1.53002 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46955 * 304.99845 * 4 3 2 6 6 C 1.52996 * 109.47295 * 65.00080 * 4 3 2 7 7 C 1.53004 * 109.47272 * 185.00214 * 4 3 2 8 8 C 1.50691 * 109.47332 * 175.00150 * 7 4 3 9 9 O 1.21284 * 120.00341 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00145 * 179.97438 * 8 7 4 11 11 C 1.47026 * 125.64636 * 0.04589 * 10 8 7 12 12 C 1.54369 * 107.28908 * 178.87074 * 11 10 8 13 13 C 1.55162 * 102.91973 * 337.85586 * 12 11 10 14 14 H 1.08997 * 111.00324 * 277.36262 * 13 12 11 15 15 N 1.46897 * 111.00309 * 153.54705 * 13 12 11 16 16 C 1.46897 * 110.99881 * 74.58526 * 15 13 12 17 17 C 1.53247 * 109.33862 * 187.25123 * 16 15 13 18 18 N 1.47074 * 108.51990 * 306.16776 * 17 16 15 19 19 C 1.36942 * 120.88247 * 231.18498 * 18 17 16 20 20 H 1.08002 * 119.99420 * 27.10940 * 19 18 17 21 21 C 1.38813 * 120.00143 * 207.11011 * 19 18 17 22 22 N 1.31617 * 119.99715 * 16.76771 * 21 19 18 23 23 Si 1.86795 * 119.99947 * 196.77399 * 21 19 18 24 24 H 1.48494 * 109.47132 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.47079 * 299.99798 * 23 21 19 26 26 H 1.48501 * 109.47054 * 59.99515 * 23 21 19 27 27 C 1.47078 * 118.23813 * 51.45896 * 18 17 16 28 28 C 1.46903 * 110.99973 * 198.88494 * 15 13 12 29 29 C 1.47422 * 125.64940 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47002 * 300.00209 * 1 2 3 32 32 H 1.08998 * 109.46701 * 59.99995 * 1 2 3 33 33 H 1.09006 * 109.47171 * 59.99998 * 3 2 1 34 34 H 1.09000 * 109.46929 * 299.99310 * 3 2 1 35 35 H 1.09005 * 109.47280 * 299.99811 * 6 4 3 36 36 H 1.08998 * 109.47311 * 59.99984 * 6 4 3 37 37 H 1.08995 * 109.47248 * 180.02562 * 6 4 3 38 38 H 1.08999 * 109.47232 * 54.99255 * 7 4 3 39 39 H 1.09000 * 109.46601 * 295.00100 * 7 4 3 40 40 H 1.09007 * 109.87782 * 298.31708 * 11 10 8 41 41 H 1.08993 * 109.88374 * 59.47992 * 11 10 8 42 42 H 1.08997 * 110.75611 * 219.49169 * 12 11 10 43 43 H 1.08995 * 110.71020 * 96.19818 * 12 11 10 44 44 H 1.09004 * 109.49264 * 67.29243 * 16 15 13 45 45 H 1.09003 * 109.51682 * 307.22339 * 16 15 13 46 46 H 1.09000 * 109.62236 * 186.45985 * 17 16 15 47 47 H 1.08996 * 109.62383 * 65.88170 * 17 16 15 48 48 H 0.97002 * 119.99529 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.62879 * 68.24716 * 27 18 17 50 50 H 1.09001 * 109.63018 * 188.82828 * 27 18 17 51 51 H 1.09007 * 109.49038 * 292.70889 * 28 15 13 52 52 H 1.09004 * 109.49330 * 52.75990 * 28 15 13 53 53 H 1.08996 * 110.36617 * 85.33217 * 29 10 8 54 54 H 1.09001 * 110.36759 * 323.00588 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9963 0.5364 -1.3064 7 6 4.1574 2.5769 0.1264 8 6 5.6538 2.4493 0.2505 9 8 6.1719 1.3528 0.2400 10 7 6.4164 3.5538 0.3733 11 6 5.9215 4.9380 0.4015 12 6 7.1464 5.8595 0.5841 13 6 8.2019 4.9128 1.2146 14 1 8.0559 4.8268 2.2913 15 7 9.5652 5.3638 0.9051 16 6 9.9234 6.5435 1.7037 17 6 11.2733 7.0892 1.2256 18 7 12.2564 5.9958 1.2559 19 6 13.4626 6.1524 1.8852 20 1 13.5573 6.8487 2.7053 21 6 14.5633 5.4161 1.4690 22 7 14.5543 4.8274 0.2918 23 14 16.0571 5.2607 2.5797 24 1 17.0882 4.4288 1.9090 25 1 16.6117 6.6105 2.8551 26 1 15.6587 4.6189 3.8582 27 6 11.9124 4.7318 0.5871 28 6 10.5351 4.2769 1.0954 29 6 7.8848 3.5740 0.5030 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.5533 -0.4556 -1.3960 36 1 3.6811 1.1525 -2.1484 37 1 5.0828 0.4499 -1.3057 38 1 3.7603 3.0736 1.0117 39 1 3.9150 3.1643 -0.7592 40 1 5.4186 5.1710 -0.5371 41 1 5.2326 5.0684 1.2359 42 1 6.9136 6.6821 1.2602 43 1 7.4924 6.2361 -0.3784 44 1 9.9961 6.2630 2.7545 45 1 9.1581 7.3103 1.5841 46 1 11.5984 7.8924 1.8868 47 1 11.1758 7.4660 0.2075 48 1 15.3237 4.3132 0.0009 49 1 11.8752 4.8864 -0.4912 50 1 12.6603 3.9758 0.8260 51 1 10.5992 4.0280 2.1547 52 1 10.2129 3.3996 0.5345 53 1 8.3529 3.5474 -0.4809 54 1 8.2237 2.7331 1.1082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570167474.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:03 Heat of formation + Delta-G solvation = -70.959608 kcal Electronic energy + Delta-G solvation = -30306.331825 eV Core-core repulsion = 26278.011189 eV Total energy + Delta-G solvation = -4028.320636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35299 -40.00370 -38.99140 -38.11595 -35.82628 -35.62315 -33.40027 -32.06940 -31.43008 -30.07479 -28.91232 -28.17368 -27.45464 -26.27771 -25.04978 -24.46335 -23.49632 -21.74710 -21.39157 -20.80486 -19.99863 -18.81952 -18.30482 -17.62663 -17.39026 -16.95204 -16.76485 -16.39029 -16.07523 -15.98956 -15.58633 -15.38047 -15.31240 -15.22887 -14.86649 -14.83315 -14.55403 -14.11992 -13.86960 -13.70987 -13.65438 -13.22632 -13.09282 -13.07244 -12.96895 -12.67015 -12.55756 -12.51995 -12.43126 -12.25767 -12.05585 -12.03678 -11.89829 -11.84525 -11.76762 -11.64659 -11.42700 -11.35721 -10.80586 -10.58709 -10.55952 -9.66326 -9.31968 -8.68671 -7.88330 -5.33228 1.45322 1.48166 1.54768 1.62586 1.86907 2.50028 2.85453 2.99749 3.27395 3.36627 3.67402 3.70230 3.72481 3.89202 4.06555 4.07053 4.19715 4.21494 4.33157 4.35430 4.40646 4.48442 4.49623 4.51493 4.54525 4.59090 4.60980 4.62275 4.67993 4.69896 4.72803 4.80991 4.86486 4.89207 4.91126 4.94831 4.98512 5.08930 5.13488 5.16616 5.24662 5.30805 5.33934 5.37560 5.45288 5.60509 5.66268 6.11492 6.25335 6.30073 6.36676 6.54248 7.12380 7.16021 7.83712 8.37664 9.18236 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.001907 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.387029 B =14679.861514 C =15348.087011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.068 3.932 4 C -0.075 4.075 5 H 0.058 0.942 6 C -0.145 4.145 7 C -0.118 4.118 8 C 0.520 3.480 9 O -0.585 6.585 10 N -0.619 5.619 11 C 0.101 3.899 12 C -0.113 4.113 13 C 0.070 3.930 14 H 0.053 0.947 15 N -0.526 5.526 16 C 0.059 3.941 17 C 0.143 3.857 18 N -0.614 5.614 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.295 1.295 25 H -0.273 1.273 26 H -0.280 1.280 27 C 0.188 3.812 28 C 0.050 3.950 29 C 0.115 3.885 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.022 0.978 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.019 0.981 48 H 0.250 0.750 49 H 0.000 1.000 50 H 0.053 0.947 51 H 0.016 0.984 52 H 0.072 0.928 53 H 0.062 0.938 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.428 0.561 0.025 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.008 4.008 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.202 4.202 7 C -0.157 4.157 8 C 0.311 3.689 9 O -0.465 6.465 10 N -0.353 5.353 11 C -0.021 4.021 12 C -0.151 4.151 13 C -0.039 4.039 14 H 0.071 0.929 15 N -0.251 5.251 16 C -0.070 4.070 17 C 0.018 3.982 18 N -0.338 5.338 19 C -0.395 4.395 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.221 1.221 25 H -0.198 1.198 26 H -0.207 1.207 27 C 0.062 3.938 28 C -0.080 4.080 29 C -0.008 4.008 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.018 0.982 50 H 0.071 0.929 51 H 0.034 0.966 52 H 0.090 0.910 53 H 0.081 0.919 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.964 -0.168 -0.547 30.969 hybrid contribution 1.529 -0.639 1.106 1.993 sum -29.435 -0.807 0.560 29.451 Atomic orbital electron populations 1.22900 0.79521 1.03550 1.01011 1.87859 1.21389 1.29135 1.95637 1.22614 0.91906 0.84449 1.01813 1.20794 0.93753 0.95626 0.99234 0.92341 1.21814 1.01105 1.00702 0.96619 1.21622 0.88339 0.98713 1.07010 1.21040 0.90610 0.82196 0.75091 1.90695 1.76039 1.27579 1.52232 1.48607 1.06788 1.07780 1.72164 1.22359 0.97154 0.78341 1.04206 1.22701 0.92303 0.97336 1.02755 1.22784 0.89346 0.94370 0.97389 0.92889 1.61984 1.00783 1.06175 1.56143 1.22483 0.97944 0.92777 0.93835 1.21163 0.88612 0.90427 0.98047 1.44404 1.15255 1.10244 1.63922 1.19514 0.87069 1.23201 1.09703 0.91312 1.25810 1.00153 1.01795 0.96982 1.70179 1.30997 1.38060 1.18978 0.85332 0.78949 0.77858 0.78257 1.22111 1.19810 1.20659 1.20664 0.91792 0.88373 0.93015 1.22665 0.93823 0.93687 0.97816 1.22051 0.81367 0.97255 1.00148 0.89238 0.92975 0.92919 0.91422 0.91347 0.93237 0.91818 0.93573 0.85744 0.85795 0.88556 0.88432 0.87645 0.89791 0.96017 0.87743 0.91943 0.96299 0.94122 0.98207 0.92870 0.96571 0.90974 0.91945 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.23 10.24 -148.98 -1.53 -8.75 16 3 C 0.07 0.84 5.32 71.98 0.38 1.22 16 4 C -0.07 -1.29 2.27 -10.79 -0.02 -1.31 16 5 H 0.06 1.34 7.95 -2.39 -0.02 1.32 16 6 C -0.15 -3.00 8.83 71.98 0.64 -2.36 16 7 C -0.12 -1.50 4.37 29.85 0.13 -1.37 16 8 C 0.52 11.99 7.57 87.65 0.66 12.65 16 9 O -0.59 -19.47 14.22 -3.04 -0.04 -19.51 16 10 N -0.62 -13.03 3.33 -811.73 -2.70 -15.73 16 11 C 0.10 1.20 6.49 86.74 0.56 1.76 16 12 C -0.11 -1.76 5.93 31.80 0.19 -1.58 16 13 C 0.07 1.72 2.76 46.31 0.13 1.85 16 14 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 15 N -0.53 -17.07 4.53 -860.95 -3.90 -20.97 16 16 C 0.06 1.86 5.52 86.39 0.48 2.33 16 17 C 0.14 5.83 6.69 86.35 0.58 6.40 16 18 N -0.61 -31.46 3.03 -697.24 -2.11 -33.58 16 19 C -0.26 -14.77 9.63 84.03 0.81 -13.96 16 20 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 21 C -0.05 -2.96 4.94 84.86 0.42 -2.54 16 22 N -0.94 -56.64 11.15 21.65 0.24 -56.39 16 23 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C 0.19 9.45 5.44 86.50 0.47 9.92 16 28 C 0.05 1.97 5.35 86.54 0.46 2.43 16 29 C 0.12 3.14 4.86 86.85 0.42 3.56 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 1.09 7.82 -2.38 -0.02 1.07 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.24 5.95 -2.39 -0.01 1.22 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 1.16 8.06 -2.39 -0.02 1.15 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.10 2.48 7.46 -2.39 -0.02 2.46 16 46 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.05 3.03 6.13 -2.39 -0.01 3.01 16 51 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.07 2.71 6.28 -2.38 -0.01 2.69 16 53 H 0.06 1.91 7.83 -2.39 -0.02 1.89 16 54 H 0.05 1.64 7.83 -2.39 -0.02 1.62 16 Total: -1.00 -76.24 414.09 0.39 -75.85 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.84 Total: 10.95 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.55 Total: 20.53 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -8.47 Total: -126.68 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.57 Total: -28.26 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -76.24 0.39 -75.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570167474.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.893 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds