Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 119.99996 * 2 1 4 4 N 1.34777 * 120.00238 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99982 * 175.13766 * 4 2 1 6 6 H 1.09003 * 109.47209 * 38.68250 * 5 4 2 7 7 C 1.50706 * 109.47248 * 278.68166 * 5 4 2 8 8 O 1.21282 * 119.99437 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00125 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00029 * 179.97438 * 9 7 5 11 11 H 1.09002 * 109.47191 * 325.00346 * 10 9 7 12 12 C 1.53005 * 109.46966 * 85.00274 * 10 9 7 13 13 C 1.53001 * 109.47186 * 205.00321 * 10 9 7 14 14 C 1.53000 * 109.47065 * 65.00299 * 13 10 9 15 15 C 1.52998 * 109.46717 * 179.97438 * 14 13 10 16 16 N 1.46507 * 109.46789 * 179.97438 * 15 14 13 17 17 C 1.36932 * 119.99937 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00227 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00036 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00026 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47193 * 90.00089 * 21 19 17 23 23 H 1.48496 * 109.47556 * 210.00126 * 21 19 17 24 24 H 1.48500 * 109.47297 * 330.00359 * 21 19 17 25 25 C 1.53002 * 109.47310 * 158.68147 * 5 4 2 26 26 C 1.54261 * 110.02927 * 57.42896 * 25 5 4 27 27 C 1.54889 * 104.19615 * 217.10581 * 26 25 5 28 28 C 1.54894 * 102.74809 * 37.94589 * 27 26 25 29 29 C 1.53869 * 110.02942 * 300.26529 * 25 5 4 30 30 H 1.09006 * 109.46787 * 90.00453 * 1 2 3 31 31 H 1.08996 * 109.47103 * 209.99656 * 1 2 3 32 32 H 1.09003 * 109.47493 * 330.00325 * 1 2 3 33 33 H 0.96998 * 119.99801 * 355.14126 * 4 2 1 34 34 H 0.96998 * 119.99971 * 0.02562 * 9 7 5 35 35 H 1.09004 * 109.47160 * 300.00258 * 12 10 9 36 36 H 1.09002 * 109.47107 * 60.00020 * 12 10 9 37 37 H 1.09001 * 109.46936 * 180.02562 * 12 10 9 38 38 H 1.09007 * 109.46822 * 185.00445 * 13 10 9 39 39 H 1.09000 * 109.47056 * 304.99793 * 13 10 9 40 40 H 1.09002 * 109.46974 * 299.99830 * 14 13 10 41 41 H 1.08998 * 109.47083 * 59.99901 * 14 13 10 42 42 H 1.09002 * 109.47333 * 299.99701 * 15 14 13 43 43 H 1.08998 * 109.47351 * 60.00156 * 15 14 13 44 44 H 0.96998 * 120.00213 * 359.97438 * 16 15 14 45 45 H 0.96997 * 119.99820 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.01790 * 178.86809 * 25 5 4 47 47 H 1.09007 * 110.48997 * 335.78377 * 26 25 5 48 48 H 1.09005 * 110.48974 * 98.42905 * 26 25 5 49 49 H 1.08998 * 110.75864 * 279.62953 * 27 26 25 50 50 H 1.09007 * 110.91590 * 156.32942 * 27 26 25 51 51 H 1.08993 * 110.48664 * 203.38247 * 28 27 26 52 52 H 1.08995 * 110.59820 * 80.79043 * 28 27 26 53 53 H 1.09001 * 110.03264 * 238.56709 * 29 25 5 54 54 H 1.08999 * 110.03563 * 359.97438 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6419 -1.1694 -0.1070 6 1 4.0501 -0.3410 0.4719 7 6 4.0395 -1.0161 -1.5526 8 8 3.1863 -0.9144 -2.4085 9 7 5.3431 -0.9909 -1.8940 10 6 5.7295 -0.8424 -3.2992 11 1 5.0081 -1.3604 -3.9311 12 6 5.7557 0.6426 -3.6667 13 6 7.1196 -1.4452 -3.5123 14 6 7.0645 -2.9540 -3.2650 15 6 8.4544 -3.5568 -3.4788 16 7 8.4019 -5.0015 -3.2413 17 6 9.5349 -5.7589 -3.3746 18 1 10.4674 -5.2912 -3.6543 19 6 9.4853 -7.1277 -3.1491 20 7 8.3490 -7.6977 -2.8078 21 14 11.0310 -8.1608 -3.3301 22 1 11.7404 -8.2229 -2.0270 23 1 10.6615 -9.5338 -3.7584 24 1 11.9202 -7.5470 -4.3489 25 6 4.1912 -2.4903 0.4356 26 6 3.5718 -3.6757 -0.3331 27 6 3.3747 -4.7677 0.7475 28 6 2.9359 -3.9477 1.9861 29 6 3.7869 -2.6632 1.9101 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6985 -2.0057 0.0720 34 1 6.0254 -1.0719 -1.2093 35 1 4.7654 1.0720 -3.5149 36 1 6.4771 1.1606 -3.0348 37 1 6.0428 0.7531 -4.7124 38 1 7.4445 -1.2562 -4.5355 39 1 7.8241 -0.9884 -2.8173 40 1 6.7396 -3.1429 -2.2418 41 1 6.3600 -3.4107 -3.9601 42 1 8.7789 -3.3680 -4.5021 43 1 9.1593 -3.1002 -2.7839 44 1 7.5646 -5.4216 -2.9898 45 1 8.3143 -8.6542 -2.6506 46 1 5.2769 -2.5097 0.3414 47 1 2.6132 -3.3903 -0.7664 48 1 4.2532 -4.0253 -1.1088 49 1 4.3104 -5.2915 0.9427 50 1 2.5947 -5.4701 0.4532 51 1 3.1532 -4.4956 2.9029 52 1 1.8745 -3.7060 1.9297 53 1 4.6764 -2.7673 2.5315 54 1 3.1997 -1.8059 2.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571283837.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -117.808459 kcal Electronic energy + Delta-G solvation = -31116.092169 eV Core-core repulsion = 27085.740014 eV Total energy + Delta-G solvation = -4030.352155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84073 -40.11257 -39.06802 -37.90796 -36.50989 -35.25138 -34.21161 -32.92002 -31.75019 -30.77121 -29.69241 -29.61397 -27.26720 -26.50069 -24.77764 -22.72881 -22.24634 -22.11846 -21.63709 -21.13444 -20.53072 -19.11987 -18.38853 -18.08370 -17.75105 -16.89057 -16.66125 -16.38634 -16.10761 -15.99484 -15.78477 -15.43369 -15.34417 -15.16602 -14.85658 -14.48121 -14.29233 -14.21019 -14.14848 -13.72679 -13.44443 -13.28735 -13.18963 -13.04361 -13.03289 -12.77757 -12.41437 -12.38288 -12.25276 -12.09177 -12.01631 -11.95148 -11.85397 -11.82658 -11.71266 -11.63005 -11.50858 -11.46825 -11.13385 -10.98623 -10.92665 -10.08750 -10.05674 -8.99475 -7.95075 -5.23929 1.47265 1.48835 1.54204 1.57316 1.59823 2.07208 2.42653 2.55936 3.38542 3.45324 3.51163 3.61775 3.69173 3.85226 3.94357 3.99623 4.09527 4.22788 4.24985 4.29814 4.38278 4.51165 4.51901 4.55857 4.57732 4.63677 4.65995 4.66826 4.76835 4.79324 4.82297 4.86079 4.89902 4.95396 4.98772 5.05011 5.10074 5.10397 5.26080 5.26978 5.27897 5.31450 5.37572 5.41593 5.43187 5.50103 5.50897 5.58240 6.27462 6.49152 6.53014 7.18854 7.25190 7.33383 8.10276 8.32871 9.28438 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002852 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.292703 B = 9816.321627 C =11638.641626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.596 6.596 4 N -0.697 5.697 5 C 0.140 3.860 6 H 0.112 0.888 7 C 0.503 3.497 8 O -0.574 6.574 9 N -0.711 5.711 10 C 0.146 3.854 11 H 0.063 0.937 12 C -0.154 4.154 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.150 3.850 16 N -0.749 5.749 17 C -0.247 4.247 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.270 1.270 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.415 0.585 34 H 0.411 0.589 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.044 0.956 42 H 0.017 0.983 43 H 0.025 0.975 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.096 0.904 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.079 0.921 53 H 0.076 0.924 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 14.931 10.361 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.477 6.477 4 N -0.350 5.350 5 C 0.030 3.970 6 H 0.130 0.870 7 C 0.289 3.711 8 O -0.453 6.453 9 N -0.364 5.364 10 C 0.042 3.958 11 H 0.081 0.919 12 C -0.212 4.212 13 C -0.147 4.147 14 C -0.148 4.148 15 C 0.024 3.976 16 N -0.391 5.391 17 C -0.378 4.378 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.195 1.195 25 C -0.108 4.108 26 C -0.163 4.163 27 C -0.163 4.163 28 C -0.156 4.156 29 C -0.152 4.152 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.247 0.753 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.043 0.957 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.092 0.908 52 H 0.098 0.902 53 H 0.094 0.906 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.572 15.732 9.684 23.529 hybrid contribution 0.666 -1.409 -0.112 1.563 sum -13.907 14.322 9.572 22.139 Atomic orbital electron populations 1.21891 0.88305 1.06525 1.05698 1.21554 0.92336 0.82744 0.73414 1.90682 1.72059 1.33098 1.51875 1.45754 1.05770 1.09626 1.73871 1.20867 0.83188 1.01117 0.91787 0.87044 1.21452 0.82749 0.74880 0.92061 1.90650 1.51062 1.51003 1.52630 1.46039 1.07078 1.73614 1.09668 1.20918 0.96416 0.96428 0.82058 0.91863 1.22090 1.01328 0.94948 1.02877 1.21744 0.95296 0.93533 1.04145 1.21559 0.96019 0.95761 1.01412 1.20842 0.96119 0.83353 0.97266 1.42617 1.09151 1.03674 1.83664 1.19646 0.90031 0.90286 1.37873 0.90701 1.25572 1.00020 0.98044 1.03184 1.69816 1.26291 1.10240 1.55582 0.85151 0.79060 0.77778 0.77852 1.21195 1.22208 1.19522 1.22059 1.01278 0.90788 0.96685 1.22434 1.00524 0.95361 0.97954 1.22486 1.01467 0.97191 0.95133 1.22363 1.00126 0.95260 0.97818 1.22179 1.00794 0.98749 0.93474 0.88327 0.87081 0.88415 0.74632 0.75305 0.94616 0.91043 0.90251 0.89279 0.89402 0.92034 0.93672 0.96489 0.95668 0.79600 0.94014 0.88548 0.91390 0.93236 0.92328 0.91010 0.90814 0.90242 0.90559 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.31 71.23 0.73 -1.29 16 2 C 0.51 11.03 7.58 87.66 0.66 11.69 16 3 O -0.60 -18.49 16.80 -3.03 -0.05 -18.54 16 4 N -0.70 -12.68 3.79 -446.09 -1.69 -14.37 16 5 C 0.14 2.78 1.93 44.25 0.09 2.86 16 6 H 0.11 2.26 7.63 -2.39 -0.02 2.24 16 7 C 0.50 13.02 6.52 87.66 0.57 13.59 16 8 O -0.57 -19.32 15.86 -3.03 -0.05 -19.37 16 9 N -0.71 -15.72 4.42 -442.52 -1.96 -17.67 16 10 C 0.15 3.40 2.57 44.99 0.12 3.51 16 11 H 0.06 1.80 7.58 -2.39 -0.02 1.79 16 12 C -0.15 -3.25 9.48 71.98 0.68 -2.57 16 13 C -0.11 -2.40 4.75 30.59 0.15 -2.25 16 14 C -0.11 -3.31 5.22 30.59 0.16 -3.15 16 15 C 0.15 5.81 6.26 86.38 0.54 6.35 16 16 N -0.75 -38.12 5.60 -343.44 -1.92 -40.05 16 17 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 20 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 21 Si 0.97 45.92 29.55 68.60 2.03 47.94 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C -0.09 -1.48 2.69 -10.07 -0.03 -1.50 16 26 C -0.12 -2.47 5.47 31.67 0.17 -2.30 16 27 C -0.13 -2.19 6.91 31.89 0.22 -1.97 16 28 C -0.12 -1.48 6.83 31.67 0.22 -1.26 16 29 C -0.11 -1.49 6.17 31.32 0.19 -1.30 16 30 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.42 5.66 6.90 -92.71 -0.64 5.02 16 34 H 0.41 7.17 8.03 -92.71 -0.74 6.43 16 35 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.10 1.58 7.57 -2.39 -0.02 1.56 16 47 H 0.07 1.32 6.27 -2.38 -0.01 1.30 16 48 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.07 0.92 7.37 -2.39 -0.02 0.90 16 Total: -1.00 -77.98 429.90 1.22 -76.76 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -1.20 Total: 40.58 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.78 Total: 3.55 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.29 Total: -130.93 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.10 Total: -37.92 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.98 1.22 -76.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571283837.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal (2) G-P(sol) polarization free energy of solvation -77.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds