Wall clock time and date at job start Sat Apr 11 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46960 * 2 1 4 4 N 1.46496 * 109.46759 * 240.00443 * 2 1 3 5 5 C 1.36937 * 120.00166 * 85.00306 * 4 2 1 6 6 H 1.08001 * 119.99867 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47094 * 59.99849 * 9 7 5 11 11 H 1.48501 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47233 * 300.00203 * 9 7 5 13 13 C 1.52998 * 109.46887 * 120.00598 * 2 1 3 14 14 H 1.09002 * 109.49918 * 59.99903 * 13 2 1 15 15 C 1.53039 * 109.49913 * 299.93250 * 13 2 1 16 16 C 1.53106 * 109.50508 * 178.69059 * 15 13 2 17 17 C 1.53185 * 109.33343 * 61.34143 * 16 15 13 18 18 N 1.46927 * 108.77460 * 305.36941 * 17 16 15 19 19 C 1.34783 * 120.63120 * 233.58596 * 18 17 16 20 20 O 1.21275 * 120.00357 * 180.02562 * 19 18 17 21 21 C 1.50707 * 119.99799 * 0.02562 * 19 18 17 22 22 N 1.46493 * 109.47107 * 179.97438 * 21 19 18 23 23 C 1.34772 * 119.99937 * 180.02562 * 22 21 19 24 24 O 1.21278 * 120.00311 * 0.02562 * 23 22 21 25 25 C 1.50704 * 119.99972 * 180.02562 * 23 22 21 26 26 C 1.53000 * 109.47177 * 180.02562 * 25 23 22 27 27 C 1.52998 * 109.47055 * 299.99673 * 25 23 22 28 28 C 1.52996 * 109.47486 * 59.99950 * 25 23 22 29 29 C 1.46919 * 118.74315 * 53.60638 * 18 17 16 30 30 H 1.08999 * 109.47394 * 299.99523 * 1 2 3 31 31 H 1.08996 * 109.47612 * 59.99559 * 1 2 3 32 32 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00309 * 264.99967 * 4 2 1 34 34 H 0.96996 * 120.00022 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46255 * 298.67520 * 15 13 2 36 36 H 1.08997 * 109.45914 * 58.63125 * 15 13 2 37 37 H 1.09008 * 109.48567 * 301.38299 * 16 15 13 38 38 H 1.08998 * 109.51592 * 181.32062 * 16 15 13 39 39 H 1.08996 * 109.59131 * 185.58096 * 17 16 15 40 40 H 1.08994 * 109.58806 * 65.15323 * 17 16 15 41 41 H 1.08999 * 109.46786 * 300.00316 * 21 19 18 42 42 H 1.09008 * 109.46619 * 59.99968 * 21 19 18 43 43 H 0.97002 * 120.00443 * 0.02562 * 22 21 19 44 44 H 1.09001 * 109.47347 * 59.99973 * 26 25 23 45 45 H 1.09002 * 109.47341 * 180.02562 * 26 25 23 46 46 H 1.09005 * 109.47078 * 300.00099 * 26 25 23 47 47 H 1.09000 * 109.47055 * 60.00220 * 27 25 23 48 48 H 1.09002 * 109.46918 * 180.02562 * 27 25 23 49 49 H 1.09001 * 109.47290 * 299.99918 * 27 25 23 50 50 H 1.08999 * 109.47019 * 59.99444 * 28 25 23 51 51 H 1.08999 * 109.47579 * 180.02562 * 28 25 23 52 52 H 1.09003 * 109.47204 * 300.00413 * 28 25 23 53 53 H 1.09001 * 109.59116 * 186.60805 * 29 18 17 54 54 H 1.09006 * 109.70559 * 66.25082 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4242 7 6 2.6122 -0.6615 -3.5091 8 7 2.9261 -1.9383 -3.4499 9 14 2.7899 0.2703 -5.1183 10 1 3.7444 1.3935 -4.9371 11 1 3.3001 -0.6477 -6.1682 12 1 1.4672 0.8062 -5.5287 13 6 2.0400 -0.7214 1.2492 14 1 1.6768 -1.7491 1.2495 15 6 1.5315 0.0004 2.4992 16 6 2.0146 -0.7401 3.7492 17 6 3.5462 -0.7393 3.7789 18 7 4.0440 -1.3000 2.5154 19 6 4.9175 -2.3264 2.5165 20 8 5.3214 -2.7802 1.4668 21 6 5.3924 -2.9103 3.8222 22 7 6.3281 -4.0055 3.5557 23 6 6.8847 -4.6807 4.5808 24 8 6.6104 -4.3821 5.7238 25 6 7.8478 -5.8070 4.3067 26 6 8.3288 -6.4007 5.6322 27 6 7.1445 -6.8916 3.4881 28 6 9.0473 -5.2727 3.5215 29 6 3.5719 -0.7203 1.2506 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6317 -1.1528 34 1 3.2501 -2.3953 -4.2418 35 1 1.9152 1.0206 2.5108 36 1 0.4419 0.0227 2.4877 37 1 1.6517 -1.7678 3.7260 38 1 1.6331 -0.2397 4.6391 39 1 3.8959 -1.3489 4.6121 40 1 3.9089 0.2821 3.8934 41 1 5.8935 -2.1374 4.4049 42 1 4.5380 -3.2910 4.3820 43 1 6.5473 -4.2447 2.6416 44 1 7.4740 -6.7815 6.1912 45 1 9.0257 -7.2150 5.4340 46 1 8.8296 -5.6282 6.2158 47 1 6.8015 -6.4689 2.5438 48 1 7.8410 -7.7064 3.2903 49 1 6.2900 -7.2723 4.0476 50 1 9.5482 -4.5000 4.1046 51 1 9.7436 -6.0874 3.3228 52 1 8.7043 -4.8500 2.5771 53 1 3.9384 -1.3174 0.4156 54 1 3.9367 0.3025 1.1563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667352179.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:50 Heat of formation + Delta-G solvation = -103.772515 kcal Electronic energy + Delta-G solvation = -30818.657402 eV Core-core repulsion = 26788.913891 eV Total energy + Delta-G solvation = -4029.743510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71097 -40.90402 -39.17721 -36.99848 -36.65049 -35.61750 -34.66657 -33.15564 -31.61226 -30.26125 -28.97611 -28.26403 -27.90847 -26.52970 -25.58154 -24.40611 -23.53389 -22.32446 -21.10364 -20.82703 -19.88287 -19.14243 -18.26133 -17.82169 -17.17564 -17.03918 -16.77574 -16.43543 -16.10484 -15.63327 -15.58473 -15.35176 -15.18255 -14.81751 -14.74690 -14.61135 -14.24483 -14.10416 -13.97410 -13.87293 -13.48859 -13.41215 -13.33320 -13.08896 -13.00437 -12.89246 -12.75483 -12.64417 -12.54118 -12.38055 -12.18453 -12.00140 -11.92540 -11.88496 -11.82765 -11.68483 -11.39908 -11.21233 -10.98271 -10.88297 -10.80779 -10.29163 -9.68333 -8.97804 -7.90960 -5.19133 1.41168 1.45289 1.48390 1.54300 1.54819 1.66027 2.27448 2.56941 3.29562 3.42253 3.56715 3.73032 3.81445 3.85579 3.89769 3.95230 4.10770 4.16440 4.20331 4.22609 4.30135 4.31733 4.44310 4.60461 4.64297 4.68719 4.69559 4.77291 4.80683 4.86504 4.91636 4.92553 4.93815 4.94217 4.99772 5.03842 5.05384 5.13999 5.18808 5.23371 5.29077 5.29097 5.36068 5.38860 5.48219 5.50539 5.56725 5.64581 6.30035 6.31255 6.38466 6.98997 7.08942 7.35597 8.13727 8.35225 9.32310 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.002715 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.209678 B =10312.139527 C =12182.797499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.047 0.953 4 N -0.736 5.736 5 C -0.233 4.233 6 H 0.076 0.924 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.089 4.089 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.095 3.905 18 N -0.601 5.601 19 C 0.500 3.500 20 O -0.579 6.579 21 C 0.109 3.891 22 N -0.717 5.717 23 C 0.523 3.477 24 O -0.574 6.574 25 C -0.083 4.083 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.141 4.141 29 C 0.131 3.869 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.412 0.588 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.057 0.943 53 H 0.053 0.947 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -2.888 22.822 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 H 0.065 0.935 4 N -0.376 5.376 5 C -0.365 4.365 6 H 0.094 0.906 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.109 4.109 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.026 4.026 18 N -0.333 5.333 19 C 0.288 3.712 20 O -0.459 6.459 21 C -0.018 4.018 22 N -0.372 5.372 23 C 0.311 3.689 24 O -0.453 6.453 25 C -0.086 4.086 26 C -0.181 4.181 27 C -0.199 4.199 28 C -0.198 4.198 29 C 0.008 3.992 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.250 0.750 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.109 0.891 52 H 0.076 0.924 53 H 0.072 0.928 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.928 -2.725 22.963 23.872 hybrid contribution 0.113 -0.116 -2.053 2.060 sum 6.041 -2.841 20.910 21.950 Atomic orbital electron populations 1.22327 0.97529 1.00535 1.00980 1.20475 0.92928 0.95031 0.85195 0.93457 1.42666 1.78383 1.10131 1.06443 1.19563 1.34512 0.94092 0.88318 0.90565 1.25536 1.03320 0.96813 1.01455 1.69835 1.52758 1.10352 1.29247 0.85278 0.77936 0.77288 0.79679 1.20479 1.22601 1.20345 1.21597 0.93673 0.99616 0.96058 0.93111 1.21637 1.01755 0.99339 0.92030 1.21930 0.94184 1.01453 0.99038 1.22201 0.95466 1.00875 0.84047 1.48198 1.43384 1.33054 1.08709 1.20998 0.79038 0.79906 0.91242 1.90747 1.58467 1.61688 1.35009 1.21134 0.95457 0.91550 0.93612 1.45891 1.45737 1.34503 1.11049 1.21138 0.80739 0.83048 0.83957 1.90657 1.63455 1.68764 1.22421 1.20869 0.94991 0.93405 0.99359 1.21654 1.01445 1.01002 0.93980 1.21904 1.01019 0.97979 0.99002 1.21898 0.96337 1.02332 0.99256 1.21368 0.94660 0.97926 0.85266 0.90095 0.94805 0.94556 0.80071 0.94351 0.90536 0.90011 0.92171 0.87164 0.87518 0.89076 0.86806 0.87103 0.74994 0.92899 0.89592 0.92808 0.92439 0.89111 0.92445 0.92307 0.89137 0.92383 0.92812 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.14 71.98 0.66 -4.52 16 2 C 0.17 6.49 2.48 44.99 0.11 6.60 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.74 -37.32 4.52 -322.95 -1.46 -38.78 16 5 C -0.23 -13.02 9.93 84.03 0.83 -12.18 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 8 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 9 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C -0.09 -2.75 1.97 -10.72 -0.02 -2.77 16 14 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -2.20 4.86 30.64 0.15 -2.05 16 16 C -0.13 -1.90 6.08 30.69 0.19 -1.71 16 17 C 0.10 1.50 6.34 86.36 0.55 2.05 16 18 N -0.60 -15.75 2.97 -818.92 -2.43 -18.18 16 19 C 0.50 14.58 7.77 87.66 0.68 15.26 16 20 O -0.58 -22.78 15.08 -3.01 -0.05 -22.82 16 21 C 0.11 2.37 4.50 85.64 0.39 2.76 16 22 N -0.72 -16.57 5.31 -466.79 -2.48 -19.05 16 23 C 0.52 12.00 6.48 87.66 0.57 12.57 16 24 O -0.57 -16.22 15.98 -3.02 -0.05 -16.27 16 25 C -0.08 -1.41 0.87 -52.93 -0.05 -1.45 16 26 C -0.12 -1.90 7.76 71.98 0.56 -1.34 16 27 C -0.14 -2.11 8.37 71.98 0.60 -1.51 16 28 C -0.14 -2.03 8.37 71.98 0.60 -1.42 16 29 C 0.13 4.41 5.47 86.37 0.47 4.89 16 30 H 0.08 2.03 6.40 -2.39 -0.02 2.02 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.37 20.80 7.62 -92.71 -0.71 20.09 16 34 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.08 1.50 6.36 -2.39 -0.02 1.48 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 1.20 5.93 -2.39 -0.01 1.18 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 2.08 7.94 -2.39 -0.02 2.06 16 42 H 0.11 2.11 7.69 -2.38 -0.02 2.09 16 43 H 0.41 10.03 6.27 -92.71 -0.58 9.45 16 44 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 0.91 8.10 -2.38 -0.02 0.90 16 47 H 0.06 0.95 7.56 -2.39 -0.02 0.93 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 0.91 7.57 -2.39 -0.02 0.90 16 53 H 0.05 2.43 6.51 -2.39 -0.02 2.42 16 54 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -77.03 419.82 2.20 -74.84 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.40 Total: 41.41 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.76 Total: 10.97 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -6.09 Total: -137.45 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.09 Total: -39.09 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -77.03 2.20 -74.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667352179.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.935 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds