Wall clock time and date at job start Sat Apr 11 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46684 * 2 1 4 4 C 1.50694 * 109.47609 * 119.99947 * 2 1 3 5 5 O 1.21291 * 119.99822 * 350.27932 * 4 2 1 6 6 N 1.34776 * 120.00160 * 170.27133 * 4 2 1 7 7 C 1.46919 * 120.63372 * 4.52770 * 6 4 2 8 8 C 1.53190 * 108.77851 * 126.36503 * 7 6 4 9 9 C 1.53045 * 109.31067 * 54.63742 * 8 7 6 10 10 C 1.53040 * 109.53963 * 298.63623 * 9 8 7 11 11 C 1.46932 * 120.62995 * 184.50209 * 6 4 2 12 12 H 1.09004 * 109.70050 * 113.77440 * 11 6 4 13 13 C 1.50706 * 109.58527 * 353.42353 * 11 6 4 14 14 O 1.21277 * 119.99647 * 293.24604 * 13 11 6 15 15 N 1.34773 * 120.00082 * 113.24820 * 13 11 6 16 16 C 1.46500 * 120.00005 * 179.97438 * 15 13 11 17 17 H 1.09000 * 109.47008 * 35.00560 * 16 15 13 18 18 C 1.52995 * 109.47178 * 274.99904 * 16 15 13 19 19 C 1.52997 * 109.46893 * 155.00017 * 16 15 13 20 20 C 1.53002 * 109.47510 * 295.00301 * 19 16 15 21 21 N 1.46503 * 109.47229 * 180.02562 * 20 19 16 22 22 C 1.36934 * 119.99697 * 179.72437 * 21 20 19 23 23 H 1.08006 * 120.00277 * 0.27285 * 22 21 20 24 24 C 1.38813 * 120.00046 * 180.26931 * 22 21 20 25 25 N 1.31620 * 119.99508 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00218 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46816 * 90.00407 * 26 24 22 28 28 H 1.48500 * 109.47593 * 210.00246 * 26 24 22 29 29 H 1.48498 * 109.47416 * 330.00829 * 26 24 22 30 30 H 1.08998 * 109.47706 * 299.99745 * 1 2 3 31 31 H 1.08998 * 109.47499 * 59.99934 * 1 2 3 32 32 H 1.09008 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47488 * 240.01001 * 2 1 3 34 34 H 1.09006 * 109.46961 * 173.86761 * 3 2 1 35 35 H 1.08997 * 109.47515 * 293.86552 * 3 2 1 36 36 H 1.09004 * 109.47056 * 53.87430 * 3 2 1 37 37 H 1.09006 * 109.58566 * 6.58317 * 7 6 4 38 38 H 1.09000 * 109.70517 * 246.22813 * 7 6 4 39 39 H 1.08997 * 109.50139 * 294.68807 * 8 7 6 40 40 H 1.08998 * 109.50025 * 174.58786 * 8 7 6 41 41 H 1.08998 * 109.46075 * 178.61908 * 9 8 7 42 42 H 1.09003 * 109.44984 * 58.64927 * 9 8 7 43 43 H 1.09003 * 109.49474 * 301.41648 * 10 9 8 44 44 H 1.08998 * 109.49981 * 181.31525 * 10 9 8 45 45 H 0.97001 * 119.99912 * 0.02562 * 15 13 11 46 46 H 1.09000 * 109.47687 * 300.00240 * 18 16 15 47 47 H 1.09002 * 109.46867 * 60.00532 * 18 16 15 48 48 H 1.08999 * 109.47102 * 179.97438 * 18 16 15 49 49 H 1.09005 * 109.47119 * 174.99817 * 19 16 15 50 50 H 1.09002 * 109.47747 * 55.00277 * 19 16 15 51 51 H 1.08991 * 109.47284 * 59.99675 * 20 19 16 52 52 H 1.09006 * 109.46728 * 300.00187 * 20 19 16 53 53 H 0.96997 * 120.00268 * 359.97438 * 21 20 19 54 54 H 0.97003 * 119.99861 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.2585 -1.0152 2.1131 6 7 3.3416 -1.0070 1.3498 7 6 4.3064 -0.5581 0.3368 8 6 5.4360 0.2051 1.0357 9 6 6.0397 -0.6762 2.1317 10 6 4.9662 -1.0084 3.1706 11 6 3.8313 -1.7852 2.4959 12 1 4.2030 -2.7507 2.1527 13 6 2.7092 -1.9966 3.4795 14 8 2.2433 -1.0516 4.0801 15 7 2.2236 -3.2357 3.6917 16 6 1.1332 -3.4413 4.6483 17 1 0.4577 -2.5864 4.6183 18 6 1.7114 -3.5855 6.0574 19 6 0.3645 -4.7118 4.2800 20 6 -0.3175 -4.5202 2.9238 21 7 -1.0541 -5.7366 2.5714 22 6 -1.7527 -5.7974 1.3953 23 1 -1.7572 -4.9502 0.7253 24 6 -2.4553 -6.9479 1.0640 25 7 -2.4502 -7.9801 1.8806 26 14 -3.4089 -7.0306 -0.5401 27 1 -2.5281 -7.5582 -1.6129 28 1 -4.5797 -7.9290 -0.3743 29 1 -3.8771 -5.6703 -0.9084 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1244 1.4446 0.1098 35 1 1.7690 1.9238 -0.9397 36 1 1.5897 1.9871 0.8301 37 1 3.8084 0.0988 -0.3763 38 1 4.7178 -1.4210 -0.1868 39 1 5.0381 1.1172 1.4804 40 1 6.2067 0.4605 0.3085 41 1 6.8599 -0.1448 2.6142 42 1 6.4151 -1.5991 1.6896 43 1 4.5727 -0.0848 3.5951 44 1 5.4026 -1.6166 3.9629 45 1 2.5966 -3.9916 3.2116 46 1 2.3869 -4.4404 6.0874 47 1 2.2590 -2.6803 6.3198 48 1 0.9000 -3.7379 6.7692 49 1 -0.3897 -4.9135 5.0407 50 1 1.0567 -5.5518 4.2230 51 1 0.4366 -4.3185 2.1632 52 1 -1.0098 -3.6802 2.9807 53 1 -1.0499 -6.4976 3.1729 54 1 -2.9408 -8.7842 1.6490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668319161.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:19 Heat of formation + Delta-G solvation = -91.784292 kcal Electronic energy + Delta-G solvation = -32077.287985 eV Core-core repulsion = 28048.064323 eV Total energy + Delta-G solvation = -4029.223662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.09354 -40.07243 -38.49230 -37.70255 -36.09243 -35.58980 -33.76826 -33.59049 -32.67553 -31.52745 -29.44581 -28.11958 -27.13381 -25.92855 -24.86731 -24.25620 -23.26657 -22.12709 -21.57719 -21.42252 -19.69379 -19.20600 -18.60406 -17.70395 -17.32541 -16.89409 -16.65207 -16.21186 -15.79718 -15.68781 -15.52572 -15.43983 -15.25346 -15.04700 -14.88579 -14.62378 -14.35738 -14.24952 -14.06044 -13.71702 -13.49619 -13.31057 -13.13622 -13.09523 -12.91141 -12.87421 -12.83542 -12.49455 -12.40938 -12.28625 -12.21154 -12.06977 -12.04069 -11.97553 -11.90332 -11.69944 -11.66138 -11.52394 -10.99269 -10.58177 -10.40439 -9.93701 -9.64241 -9.05870 -7.99278 -5.29180 1.43408 1.46086 1.51510 1.55027 1.64577 2.28356 2.33780 2.52451 3.33421 3.45251 3.60464 3.74567 3.83309 3.86276 3.90096 4.01971 4.05786 4.06862 4.12420 4.13835 4.24207 4.36317 4.39704 4.49190 4.53609 4.62003 4.64074 4.69112 4.72151 4.80351 4.82876 4.84881 4.86256 4.88347 4.97477 4.99832 5.07244 5.13503 5.18301 5.20304 5.22008 5.25487 5.29373 5.31761 5.43072 5.46240 5.51595 5.69772 6.22966 6.34353 6.69633 7.17888 7.29096 7.55090 8.02050 8.29670 9.24042 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.003452 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.100651 B = 8109.364192 C = 9620.925027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.492 3.508 5 O -0.546 6.546 6 N -0.602 5.602 7 C 0.091 3.909 8 C -0.133 4.133 9 C -0.113 4.113 10 C -0.115 4.115 11 C 0.125 3.875 12 H 0.107 0.893 13 C 0.531 3.469 14 O -0.571 6.571 15 N -0.716 5.716 16 C 0.161 3.839 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.116 4.116 20 C 0.168 3.832 21 N -0.743 5.743 22 C -0.251 4.251 23 H 0.065 0.935 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.975 3.025 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.274 1.274 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.403 0.597 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.014 0.986 52 H -0.008 1.008 53 H 0.376 0.624 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.212 18.067 -3.732 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.281 3.719 5 O -0.423 6.423 6 N -0.338 5.338 7 C -0.030 4.030 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.154 4.154 11 C 0.018 3.982 12 H 0.125 0.875 13 C 0.319 3.681 14 O -0.450 6.450 15 N -0.369 5.369 16 C 0.055 3.945 17 H 0.068 0.932 18 C -0.206 4.206 19 C -0.154 4.154 20 C 0.042 3.958 21 N -0.386 5.386 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.803 3.197 27 H -0.207 1.207 28 H -0.216 1.216 29 H -0.199 1.199 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.238 0.762 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.032 0.968 52 H 0.010 0.990 53 H 0.208 0.792 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.387 18.666 -2.989 29.301 hybrid contribution -1.068 -0.912 -0.389 1.457 sum 21.319 17.754 -3.378 27.949 Atomic orbital electron populations 1.21589 0.93837 1.01233 1.02224 1.21322 0.97169 0.98628 0.95519 1.21971 1.02254 0.92239 1.03562 1.21590 0.82109 0.79083 0.89104 1.90834 1.55957 1.53743 1.41737 1.48149 1.06959 1.54859 1.23874 1.22363 0.90018 1.00647 0.89941 1.21959 0.98000 0.98217 0.98968 1.21523 0.96693 1.01192 0.95602 1.21790 0.94560 0.99948 0.99068 1.21306 0.93005 0.97220 0.86662 0.87487 1.20322 0.82948 0.82456 0.82330 1.90618 1.60345 1.41730 1.52278 1.45904 1.37174 1.09116 1.44688 1.20608 0.88090 0.96483 0.89295 0.93227 1.22045 1.01761 1.01986 0.94788 1.21878 0.99547 0.97383 0.96633 1.20539 0.92654 0.87774 0.94882 1.42546 1.59321 1.14331 1.22451 1.19542 1.22710 0.98862 0.97185 0.91737 1.25573 1.02394 0.96019 1.02313 1.69811 1.47924 1.05136 1.38799 0.85131 0.77907 0.77416 0.79265 1.20706 1.21627 1.19937 0.94215 0.89252 0.94855 0.86215 0.89816 0.88756 0.93982 0.87007 0.89123 0.92473 0.87407 0.89906 0.89833 0.93100 0.89800 0.76197 0.90681 0.93369 0.90963 0.90471 0.90038 0.96797 0.99003 0.79156 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.54 71.98 0.61 -2.74 16 2 C -0.11 -2.17 2.41 -11.54 -0.03 -2.20 16 3 C -0.14 -2.07 8.70 71.98 0.63 -1.45 16 4 C 0.49 14.04 6.88 87.66 0.60 14.64 16 5 O -0.55 -21.80 11.54 20.60 0.24 -21.57 16 6 N -0.60 -12.71 2.97 -799.17 -2.38 -15.09 16 7 C 0.09 0.97 5.53 86.36 0.48 1.45 16 8 C -0.13 -1.09 5.96 30.67 0.18 -0.91 16 9 C -0.11 -1.06 5.88 30.62 0.18 -0.88 16 10 C -0.11 -1.98 5.29 30.67 0.16 -1.82 16 11 C 0.12 2.74 3.32 44.23 0.15 2.89 16 12 H 0.11 1.83 7.94 -2.38 -0.02 1.81 16 13 C 0.53 16.84 4.32 87.66 0.38 17.22 16 14 O -0.57 -23.24 14.22 20.65 0.29 -22.95 16 15 N -0.72 -21.60 4.53 -442.55 -2.00 -23.60 16 16 C 0.16 5.30 2.57 44.99 0.12 5.42 16 17 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 18 C -0.15 -3.92 9.48 71.98 0.68 -3.24 16 19 C -0.12 -4.12 4.87 30.59 0.15 -3.98 16 20 C 0.17 7.76 6.15 86.38 0.53 8.29 16 21 N -0.74 -40.87 5.60 -343.44 -1.92 -42.79 16 22 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 23 H 0.06 3.83 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 25 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 26 Si 0.97 47.55 29.55 68.60 2.03 49.57 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 29 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 30 H 0.04 1.19 7.99 -2.39 -0.02 1.17 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 33 H 0.12 1.81 7.64 -2.39 -0.02 1.80 16 34 H 0.08 0.91 5.28 -2.38 -0.01 0.89 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.87 4.16 -2.38 -0.01 0.86 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.64 8.07 -2.39 -0.02 0.62 16 40 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.40 10.45 8.46 -92.71 -0.78 9.66 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 50 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.01 0.66 7.75 -2.39 -0.02 0.64 16 52 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 53 H 0.38 21.31 7.67 -92.71 -0.71 20.60 16 54 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.03 416.84 2.05 -82.98 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.61 Total: 38.89 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.13 Total: 14.75 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -6.02 Total: -141.67 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: 0.53 Total: -44.52 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -85.03 2.05 -82.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668319161.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.808 kcal (2) G-P(sol) polarization free energy of solvation -85.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds