Wall clock time and date at job start Sat Apr 11 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47403 * 2 1 4 4 C 1.50696 * 109.47475 * 120.00136 * 2 1 3 5 5 O 1.21281 * 119.99691 * 354.07623 * 4 2 1 6 6 N 1.34775 * 120.00383 * 174.07705 * 4 2 1 7 7 C 1.46962 * 120.65298 * 5.99399 * 6 4 2 8 8 C 1.53194 * 108.89037 * 233.53169 * 7 6 4 9 9 C 1.53035 * 109.31236 * 305.44647 * 8 7 6 10 10 C 1.53042 * 109.54162 * 61.36209 * 9 8 7 11 11 C 1.46924 * 120.63130 * 186.17494 * 6 4 2 12 12 H 1.09000 * 109.58508 * 246.32245 * 11 6 4 13 13 C 1.50702 * 109.58784 * 6.60829 * 11 6 4 14 14 O 1.21281 * 119.99957 * 60.97803 * 13 11 6 15 15 N 1.34773 * 119.99879 * 240.98320 * 13 11 6 16 16 C 1.46496 * 120.00007 * 179.97438 * 15 13 11 17 17 H 1.09004 * 109.47112 * 34.99629 * 16 15 13 18 18 C 1.52999 * 109.47297 * 274.99691 * 16 15 13 19 19 C 1.53003 * 109.47519 * 154.99759 * 16 15 13 20 20 C 1.53001 * 109.46929 * 295.00333 * 19 16 15 21 21 N 1.46500 * 109.47075 * 179.97438 * 20 19 16 22 22 C 1.36933 * 120.00012 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99978 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00128 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99544 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99898 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47254 * 60.00336 * 26 24 22 28 28 H 1.48502 * 109.47121 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47214 * 299.99828 * 26 24 22 30 30 H 1.09006 * 109.46874 * 300.00093 * 1 2 3 31 31 H 1.09000 * 109.47624 * 59.99868 * 1 2 3 32 32 H 1.08993 * 109.47403 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46874 * 239.99907 * 2 1 3 34 34 H 1.08995 * 109.47298 * 54.36642 * 3 2 1 35 35 H 1.08993 * 109.47459 * 174.37449 * 3 2 1 36 36 H 1.09008 * 109.46635 * 294.36937 * 3 2 1 37 37 H 1.09000 * 109.46408 * 113.74993 * 7 6 4 38 38 H 1.08998 * 109.71145 * 353.46734 * 7 6 4 39 39 H 1.08998 * 109.49560 * 185.49207 * 8 7 6 40 40 H 1.08997 * 109.51800 * 65.41332 * 8 7 6 41 41 H 1.09008 * 109.45950 * 301.34369 * 9 8 7 42 42 H 1.09004 * 109.46175 * 181.38512 * 9 8 7 43 43 H 1.08997 * 109.49670 * 178.68294 * 10 9 8 44 44 H 1.09001 * 109.49809 * 58.58476 * 10 9 8 45 45 H 0.97000 * 120.00060 * 359.97438 * 15 13 11 46 46 H 1.08996 * 109.47339 * 179.97438 * 18 16 15 47 47 H 1.09004 * 109.46988 * 300.00013 * 18 16 15 48 48 H 1.09005 * 109.46990 * 60.00011 * 18 16 15 49 49 H 1.08997 * 109.47424 * 174.99921 * 19 16 15 50 50 H 1.09003 * 109.46855 * 54.99766 * 19 16 15 51 51 H 1.09003 * 109.46889 * 299.99411 * 20 19 16 52 52 H 1.08997 * 109.47404 * 59.99575 * 20 19 16 53 53 H 0.97000 * 120.00121 * 359.97438 * 21 20 19 54 54 H 0.97008 * 119.99462 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2495 -1.0765 2.0813 6 7 3.3515 -0.9389 1.3852 7 6 4.3244 -0.3885 0.4310 8 6 5.2041 -1.5279 -0.0931 9 6 5.8331 -2.2670 1.0901 10 6 4.7296 -2.8706 1.9619 11 6 3.8445 -1.7464 2.5093 12 1 4.4270 -1.1180 3.1829 13 6 2.6773 -2.3402 3.2551 14 8 1.9144 -3.0927 2.6872 15 7 2.4812 -2.0347 4.5530 16 6 1.3462 -2.6114 5.2778 17 1 1.1639 -3.6249 4.9204 18 6 0.1008 -1.7550 5.0400 19 6 1.6620 -2.6475 6.7745 20 6 2.8305 -3.6026 7.0262 21 7 3.1332 -3.6367 8.4592 22 6 4.1484 -4.4284 8.9258 23 1 4.7256 -5.0280 8.2375 24 6 4.4356 -4.4604 10.2836 25 7 3.7319 -3.7301 11.1224 26 14 5.8209 -5.5399 10.9200 27 1 7.1008 -5.1240 10.2923 28 1 5.9227 -5.3965 12.3946 29 1 5.5401 -6.9577 10.5792 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.5967 1.9846 0.8352 35 1 3.1253 1.4441 0.1007 36 1 1.7613 1.9264 -0.9362 37 1 4.9467 0.3521 0.9333 38 1 3.7986 0.0797 -0.4011 39 1 5.9911 -1.1182 -0.7262 40 1 4.5948 -2.2213 -0.6729 41 1 6.4227 -1.5678 1.6831 42 1 6.4791 -3.0629 0.7192 43 1 5.1790 -3.4166 2.7914 44 1 4.1243 -3.5513 1.3631 45 1 3.0915 -1.4330 5.0072 46 1 -0.7437 -2.1843 5.5789 47 1 0.2831 -0.7415 5.3974 48 1 -0.1242 -1.7293 3.9737 49 1 0.7855 -2.9933 7.3225 50 1 1.9310 -1.6470 7.1133 51 1 2.5615 -4.6031 6.6874 52 1 3.7069 -3.2568 6.4782 53 1 2.6146 -3.0985 9.0775 54 1 3.9328 -3.7522 12.0712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668319163.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:27 Heat of formation + Delta-G solvation = -91.175578 kcal Electronic energy + Delta-G solvation = -31584.971930 eV Core-core repulsion = 27555.774664 eV Total energy + Delta-G solvation = -4029.197266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08255 -40.06064 -38.47738 -37.69909 -36.06871 -35.56314 -33.73551 -33.59031 -32.69067 -31.50146 -29.41067 -28.07501 -27.13932 -25.89337 -24.87206 -24.22052 -23.27049 -22.17689 -21.50144 -21.31463 -19.87861 -19.19769 -18.59178 -17.59554 -17.30863 -16.78566 -16.64875 -16.36499 -15.81424 -15.59035 -15.52097 -15.19657 -15.18138 -15.05690 -14.90472 -14.72733 -14.52992 -14.20351 -13.88984 -13.75759 -13.46682 -13.26705 -13.08679 -13.00127 -12.88195 -12.85545 -12.79792 -12.53646 -12.38765 -12.30001 -12.18800 -12.01586 -12.00917 -11.96443 -11.92996 -11.71966 -11.63053 -11.47297 -10.95825 -10.60865 -10.39734 -9.94703 -9.61789 -9.03187 -7.97009 -5.26698 1.45910 1.49553 1.53640 1.55799 1.70188 2.23297 2.33097 2.54525 3.36130 3.46922 3.62500 3.74241 3.82989 3.85595 3.95732 4.05582 4.06053 4.07039 4.11450 4.14985 4.22667 4.39278 4.40115 4.53313 4.54294 4.61660 4.67728 4.74116 4.75069 4.79983 4.84437 4.87145 4.89352 4.90064 5.00780 5.01851 5.05762 5.12032 5.18230 5.23255 5.25888 5.28749 5.34490 5.35593 5.42826 5.46213 5.51257 5.69222 6.24974 6.39309 6.68271 7.21673 7.31236 7.51545 8.05651 8.30841 9.26319 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.002651 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.312860 B =10560.568930 C =11860.625475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.149 4.149 4 C 0.495 3.505 5 O -0.542 6.542 6 N -0.603 5.603 7 C 0.095 3.905 8 C -0.134 4.134 9 C -0.114 4.114 10 C -0.120 4.120 11 C 0.128 3.872 12 H 0.105 0.895 13 C 0.533 3.467 14 O -0.574 6.574 15 N -0.715 5.715 16 C 0.164 3.836 17 H 0.059 0.941 18 C -0.144 4.144 19 C -0.117 4.117 20 C 0.159 3.841 21 N -0.745 5.745 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.976 3.024 27 H -0.274 1.274 28 H -0.293 1.293 29 H -0.280 1.280 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.404 0.596 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.005 0.995 52 H 0.025 0.975 53 H 0.375 0.625 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 13.902 -30.031 33.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 C -0.206 4.206 4 C 0.284 3.716 5 O -0.418 6.418 6 N -0.339 5.339 7 C -0.025 4.025 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.159 4.159 11 C 0.022 3.978 12 H 0.122 0.878 13 C 0.321 3.679 14 O -0.453 6.453 15 N -0.367 5.367 16 C 0.059 3.941 17 H 0.077 0.923 18 C -0.203 4.203 19 C -0.155 4.155 20 C 0.032 3.968 21 N -0.388 5.388 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.804 3.196 27 H -0.200 1.200 28 H -0.219 1.219 29 H -0.206 1.206 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.239 0.761 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.023 0.977 52 H 0.043 0.957 53 H 0.207 0.793 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.518 13.056 -30.003 32.756 hybrid contribution 0.387 -0.608 1.396 1.571 sum 1.905 12.449 -28.608 31.257 Atomic orbital electron populations 1.21570 0.93302 1.01336 1.02392 1.21297 0.97604 0.98472 0.95160 1.22053 1.02599 0.92145 1.03757 1.21570 0.81736 0.79065 0.89231 1.90750 1.55414 1.51414 1.44233 1.48141 1.06432 1.51779 1.27541 1.22398 0.90996 0.96389 0.92761 1.21967 0.99859 0.97575 0.97812 1.21523 0.96269 1.00736 0.96619 1.21806 0.97173 0.96204 1.00692 1.21163 0.93031 0.94353 0.89303 0.87766 1.20309 0.85293 0.80479 0.81837 1.90626 1.47386 1.39551 1.67718 1.45894 1.29974 1.49814 1.11053 1.20583 0.86445 0.96971 0.90121 0.92311 1.21971 0.96821 0.99721 1.01740 1.21883 0.98751 1.00352 0.94504 1.20698 0.95544 0.96000 0.84553 1.42561 1.39601 1.53392 1.03273 1.19581 1.08584 1.18270 0.91782 0.90989 1.25599 1.02597 1.02181 0.96268 1.69811 1.44144 1.45533 1.02426 0.85187 0.79202 0.78514 0.76714 1.20028 1.21854 1.20621 0.93663 0.89457 0.94560 0.86967 0.93293 0.89718 0.89076 0.88962 0.86495 0.87490 0.92469 0.90002 0.90380 0.90783 0.92938 0.76109 0.91460 0.92294 0.93140 0.90534 0.90592 0.97750 0.95701 0.79311 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.50 71.98 0.61 -1.63 16 2 C -0.10 -1.53 2.43 -11.54 -0.03 -1.56 16 3 C -0.15 -1.26 8.69 71.98 0.63 -0.64 16 4 C 0.49 11.52 6.74 87.66 0.59 12.11 16 5 O -0.54 -17.78 10.52 20.59 0.22 -17.56 16 6 N -0.60 -11.08 2.98 -799.09 -2.38 -13.46 16 7 C 0.10 0.81 5.03 86.36 0.43 1.24 16 8 C -0.13 -1.08 6.08 30.67 0.19 -0.90 16 9 C -0.11 -1.30 5.88 30.62 0.18 -1.12 16 10 C -0.12 -2.37 5.32 30.67 0.16 -2.21 16 11 C 0.13 2.82 3.31 44.23 0.15 2.97 16 12 H 0.10 1.85 7.92 -2.39 -0.02 1.83 16 13 C 0.53 16.71 4.36 87.66 0.38 17.09 16 14 O -0.57 -22.93 14.25 20.59 0.29 -22.64 16 15 N -0.71 -21.38 4.53 -442.53 -2.00 -23.39 16 16 C 0.16 5.36 2.57 44.99 0.12 5.48 16 17 H 0.06 2.22 7.58 -2.38 -0.02 2.20 16 18 C -0.14 -4.41 9.48 71.98 0.68 -3.73 16 19 C -0.12 -4.00 4.87 30.60 0.15 -3.85 16 20 C 0.16 6.74 6.15 86.38 0.53 7.27 16 21 N -0.75 -39.38 5.60 -343.45 -1.92 -41.30 16 22 C -0.25 -14.45 9.99 84.04 0.84 -13.61 16 23 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 25 N -0.97 -60.11 13.06 21.65 0.28 -59.82 16 26 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 30 H 0.04 0.94 8.04 -2.38 -0.02 0.92 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.21 7.67 -2.38 -0.02 1.19 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.45 5.10 -2.39 -0.01 0.43 16 36 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.12 0.53 4.45 -2.39 -0.01 0.52 16 39 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.31 7.94 -2.39 -0.02 1.29 16 45 H 0.40 10.42 8.44 -92.71 -0.78 9.64 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 48 H 0.05 1.79 6.90 -2.38 -0.02 1.77 16 49 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 52 H 0.03 1.03 7.75 -2.39 -0.02 1.01 16 53 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16 54 H 0.25 15.15 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -80.72 414.45 1.98 -78.74 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.61 Total: 37.66 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.08 Total: 13.04 kcal Atomic # 7 Polarization: -131.95 SS G_CDS: -6.03 Total: -137.98 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: 0.51 Total: -40.20 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -80.72 1.98 -78.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668319163.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.439 kcal (2) G-P(sol) polarization free energy of solvation -80.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds