Wall clock time and date at job start Sat Apr 11 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46461 * 2 1 4 4 C 1.52998 * 109.47609 * 120.00130 * 2 1 3 5 5 N 1.46896 * 109.47537 * 175.00526 * 4 2 1 6 6 C 1.46895 * 111.00164 * 66.04226 * 5 4 2 7 7 C 1.46893 * 111.00236 * 189.99997 * 5 4 2 8 8 C 1.50704 * 109.47286 * 169.99725 * 7 5 4 9 9 O 1.21291 * 119.99889 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99827 * 180.02562 * 8 7 5 11 11 C 1.37104 * 119.99477 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00318 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99725 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00096 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99969 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47328 * 89.99793 * 15 13 11 17 17 H 1.48497 * 109.46873 * 210.00018 * 15 13 11 18 18 H 1.48503 * 109.46871 * 329.99418 * 15 13 11 19 19 N 1.46492 * 109.47314 * 240.00511 * 2 1 3 20 20 C 1.34783 * 120.00243 * 84.99212 * 19 2 1 21 21 O 1.21279 * 119.99873 * 0.02562 * 20 19 2 22 22 C 1.50699 * 119.99993 * 179.97438 * 20 19 2 23 23 C 1.53003 * 109.47202 * 180.02562 * 22 20 19 24 24 C 1.52998 * 110.05489 * 58.58041 * 23 22 20 25 25 C 1.53869 * 110.03485 * 180.02562 * 23 22 20 26 26 C 1.54270 * 106.63967 * 119.25869 * 25 23 22 27 27 C 1.55005 * 104.13720 * 23.62421 * 26 25 23 28 28 C 1.54268 * 110.02859 * 297.17152 * 23 22 20 29 29 H 1.08997 * 109.47380 * 60.00299 * 1 2 3 30 30 H 1.09007 * 109.46461 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47094 * 299.99196 * 1 2 3 32 32 H 1.09005 * 109.47096 * 295.00615 * 4 2 1 33 33 H 1.09000 * 109.46924 * 54.99568 * 4 2 1 34 34 H 1.09006 * 109.47067 * 60.00532 * 6 5 4 35 35 H 1.08999 * 109.47212 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47806 * 300.00481 * 6 5 4 37 37 H 1.08994 * 109.47368 * 289.99745 * 7 5 4 38 38 H 1.09003 * 109.47478 * 49.99830 * 7 5 4 39 39 H 0.96993 * 120.00501 * 0.02562 * 10 8 7 40 40 H 0.96999 * 120.00125 * 179.97438 * 14 13 11 41 41 H 0.97002 * 119.99996 * 264.99508 * 19 2 1 42 42 H 1.09003 * 109.47172 * 60.00477 * 22 20 19 43 43 H 1.08997 * 109.47621 * 300.00205 * 22 20 19 44 44 H 1.08998 * 109.47417 * 181.41792 * 24 23 22 45 45 H 1.08995 * 109.47912 * 301.42187 * 24 23 22 46 46 H 1.09003 * 109.46563 * 61.42261 * 24 23 22 47 47 H 1.09002 * 110.03268 * 238.56956 * 25 23 22 48 48 H 1.08995 * 110.03391 * 359.95262 * 25 23 22 49 49 H 1.08998 * 110.48170 * 142.31277 * 26 25 23 50 50 H 1.08998 * 110.48753 * 264.95665 * 26 25 23 51 51 H 1.09001 * 110.74691 * 203.73447 * 27 26 25 52 52 H 1.09005 * 110.92280 * 80.43999 * 27 26 25 53 53 H 1.09003 * 110.49208 * 335.77788 * 28 23 22 54 54 H 1.08998 * 110.48781 * 98.29484 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5041 -0.8265 1.1904 6 6 4.1310 0.4994 1.2719 7 6 4.0109 -1.7142 2.2453 8 6 5.4726 -1.9935 2.0077 9 8 6.0366 -1.5018 1.0531 10 7 6.1529 -2.7904 2.8554 11 6 7.4826 -3.0449 2.6388 12 1 7.9850 -2.6064 1.7893 13 6 8.1842 -3.8661 3.5130 14 7 9.4585 -4.1104 3.3052 15 14 7.3154 -4.6239 4.9828 16 1 6.7460 -5.9400 4.5969 17 1 8.2872 -4.8106 6.0900 18 1 6.2224 -3.7236 5.4301 19 7 2.0183 -0.6905 -1.1961 20 6 2.1470 -0.0181 -2.3572 21 8 1.8588 1.1588 -2.4115 22 6 2.6499 -0.7283 -3.5875 23 6 2.7017 0.2550 -4.7586 24 6 3.6150 1.4332 -4.4144 25 6 3.2133 -0.4574 -6.0228 26 6 2.0875 -0.3570 -7.0727 27 6 1.2647 0.8792 -6.6284 28 6 1.2823 0.7642 -5.0842 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -0.1584 2.1370 33 1 1.6055 -1.7198 1.2951 34 1 3.8524 0.9759 2.2119 35 1 5.2148 0.3924 1.2266 36 1 3.7911 1.1141 0.4384 37 1 3.8859 -1.2337 3.2156 38 1 3.4547 -2.6516 2.2298 39 1 5.7017 -3.1846 3.6182 40 1 9.9483 -4.6834 3.9157 41 1 2.2491 -1.6316 -1.1526 42 1 1.9777 -1.5506 -3.8326 43 1 3.6492 -1.1200 -3.3980 44 1 3.6252 2.1397 -5.2444 45 1 3.2442 1.9309 -3.5184 46 1 4.6265 1.0686 -4.2353 47 1 4.1127 0.0360 -6.3913 48 1 3.4256 -1.5034 -5.8019 49 1 2.5060 -0.2003 -8.0669 50 1 1.4685 -1.2540 -7.0554 51 1 0.2447 0.8210 -7.0083 52 1 1.7440 1.8029 -6.9527 53 1 0.5332 0.0481 -4.7463 54 1 1.1119 1.7382 -4.6255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669806346.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:44 Heat of formation + Delta-G solvation = -103.889723 kcal Electronic energy + Delta-G solvation = -30727.938114 eV Core-core repulsion = 26698.189521 eV Total energy + Delta-G solvation = -4029.748593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.28811 -40.48452 -39.32323 -38.10408 -36.09938 -35.48050 -33.72839 -33.19728 -31.98098 -29.62380 -29.55914 -28.66932 -27.99950 -26.54266 -25.68299 -23.88781 -22.04007 -21.52232 -21.21624 -21.18675 -20.14229 -19.55630 -18.07279 -17.66752 -17.17876 -16.78017 -16.65090 -16.38009 -16.08507 -15.97113 -15.66737 -15.49987 -15.07425 -14.92673 -14.76604 -14.52230 -14.32494 -14.22738 -14.02971 -13.75380 -13.56691 -13.28217 -13.15420 -12.91633 -12.87979 -12.67447 -12.60762 -12.46778 -12.40745 -12.37980 -12.04899 -11.96969 -11.88790 -11.72090 -11.60893 -11.45052 -11.44769 -11.33819 -11.26653 -10.42292 -10.33102 -10.20790 -9.81972 -9.20699 -8.39231 -5.99659 1.30943 1.36859 1.45431 1.83958 2.00293 2.24482 2.39343 2.64545 3.16737 3.27617 3.65491 3.70298 3.81609 3.82972 4.09761 4.14718 4.22780 4.34149 4.37333 4.38223 4.43567 4.47294 4.53509 4.55587 4.57382 4.59480 4.66518 4.70991 4.75655 4.80711 4.83919 4.86009 4.87474 5.01213 5.06424 5.07980 5.16119 5.17926 5.22955 5.27968 5.31843 5.44144 5.48178 5.52417 5.55316 5.60184 5.77467 5.91168 6.01847 6.18320 6.62640 6.76756 6.91925 7.43550 7.48041 8.01891 8.78575 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.002397 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.143925 B =11679.874958 C =12901.759472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.048 3.952 5 N -0.530 5.530 6 C 0.032 3.968 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.605 6.605 10 N -0.594 5.594 11 C -0.324 4.324 12 H 0.054 0.946 13 C -0.018 4.018 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.278 1.278 18 H -0.231 1.231 19 N -0.705 5.705 20 C 0.511 3.489 21 O -0.571 6.571 22 C -0.130 4.130 23 C -0.045 4.045 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.100 4.100 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.409 0.591 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.072 0.928 52 H 0.061 0.939 53 H 0.059 0.941 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.276 4.103 -9.567 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.117 4.117 7 C -0.077 4.077 8 C 0.239 3.761 9 O -0.489 6.489 10 N -0.236 5.236 11 C -0.453 4.453 12 H 0.072 0.928 13 C -0.216 4.216 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.204 1.204 18 H -0.154 1.154 19 N -0.356 5.356 20 C 0.299 3.701 21 O -0.452 6.452 22 C -0.170 4.170 23 C -0.046 4.046 24 C -0.205 4.205 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.163 4.163 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.245 0.755 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.080 0.920 53 H 0.078 0.922 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.785 4.966 -10.621 26.517 hybrid contribution 0.684 -0.331 1.609 1.779 sum -23.101 4.634 -9.012 25.226 Atomic orbital electron populations 1.22041 0.93416 1.03085 1.02354 1.20909 0.94439 0.96299 0.84157 0.92181 1.22582 0.86021 1.02705 0.96634 1.61454 1.05732 1.11403 1.46876 1.22319 1.00234 0.89531 0.99573 1.21861 0.91238 1.00059 0.94516 1.20949 0.90134 0.81367 0.83606 1.90533 1.71678 1.54132 1.32518 1.42047 1.09330 1.45798 1.26438 1.18968 0.85591 1.29016 1.11753 0.92823 1.26123 0.96219 0.97354 1.01909 1.69808 1.09937 1.38345 1.39713 0.85360 0.79166 0.79824 0.77125 1.18006 1.20371 1.15404 1.45895 1.66307 1.14554 1.08850 1.20946 0.76698 0.87076 0.85360 1.90578 1.51745 1.17193 1.85640 1.21899 1.03366 0.99501 0.92205 1.20889 0.95985 0.94191 0.93522 1.22089 0.98103 0.98143 1.02125 1.22304 0.98619 1.00630 0.94052 1.22353 0.96712 0.98245 0.98334 1.22538 1.00358 0.98336 0.95059 1.22313 0.95124 1.00648 0.95717 0.93655 0.90773 0.90356 0.91743 0.87621 0.94875 0.93094 0.92235 0.90595 0.85450 0.77555 0.91261 0.75537 0.86967 0.89180 0.92858 0.91941 0.94224 0.91924 0.90918 0.91077 0.90880 0.90946 0.92045 0.92226 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.48 71.98 0.68 -1.61 16 2 C 0.15 2.92 2.35 44.99 0.11 3.02 16 3 H 0.06 1.53 6.23 -2.38 -0.01 1.52 16 4 C 0.05 0.86 4.52 86.30 0.39 1.25 16 5 N -0.53 -14.39 4.22 -927.08 -3.92 -18.30 16 6 C 0.03 0.99 8.96 127.69 1.14 2.13 16 7 C 0.05 1.51 5.45 85.56 0.47 1.98 16 8 C 0.45 19.51 7.47 87.66 0.66 20.16 16 9 O -0.60 -32.47 13.91 -3.06 -0.04 -32.51 16 10 N -0.59 -27.11 5.09 -306.98 -1.56 -28.67 16 11 C -0.32 -18.69 10.16 84.04 0.85 -17.84 16 12 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 14 N -0.94 -56.30 13.96 21.66 0.30 -56.00 16 15 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 16 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 17 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 19 N -0.71 -14.97 4.80 -442.54 -2.12 -17.09 16 20 C 0.51 12.54 7.26 87.66 0.64 13.18 16 21 O -0.57 -17.29 11.82 -3.03 -0.04 -17.33 16 22 C -0.13 -2.62 4.41 29.85 0.13 -2.49 16 23 C -0.05 -0.94 0.63 -51.46 -0.03 -0.97 16 24 C -0.15 -3.69 7.83 71.98 0.56 -3.12 16 25 C -0.12 -2.03 6.11 31.32 0.19 -1.83 16 26 C -0.12 -1.70 6.84 31.71 0.22 -1.49 16 27 C -0.13 -2.01 6.91 31.92 0.22 -1.79 16 28 C -0.10 -2.02 4.73 31.66 0.15 -1.87 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.97 8.12 -2.38 -0.02 0.95 16 33 H 0.11 1.38 7.93 -2.39 -0.02 1.36 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 2.06 5.82 -2.39 -0.01 2.05 16 36 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 37 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 38 H 0.13 2.66 7.93 -2.39 -0.02 2.64 16 39 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 40 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.41 7.71 8.60 -92.71 -0.80 6.92 16 42 H 0.11 1.70 8.12 -2.39 -0.02 1.68 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.88 5.41 -2.39 -0.01 1.87 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16 48 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 49 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 54 H 0.05 1.30 7.15 -2.39 -0.02 1.29 16 Total: -1.00 -77.80 415.10 0.87 -76.94 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.50 Total: 44.83 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.84 Total: 8.19 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -7.30 Total: -120.07 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.08 Total: -49.84 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -77.80 0.87 -76.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669806346.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.953 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds