Wall clock time and date at job start Sat Apr 11 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47039 * 2 1 4 4 N 1.46496 * 109.46938 * 120.00200 * 2 1 3 5 5 C 1.36935 * 120.00014 * 274.99721 * 4 2 1 6 6 H 1.07998 * 120.00276 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00065 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00093 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99796 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46823 * 89.99651 * 9 7 5 11 11 H 1.48498 * 109.47019 * 209.99571 * 9 7 5 12 12 H 1.48498 * 109.47323 * 329.99981 * 9 7 5 13 13 C 1.53004 * 109.46962 * 240.00440 * 2 1 3 14 14 H 1.09002 * 110.88150 * 296.11567 * 13 2 1 15 15 C 1.55153 * 111.00358 * 172.19941 * 13 2 1 16 16 C 1.54319 * 102.86326 * 206.22610 * 15 13 2 17 17 N 1.47027 * 107.27164 * 22.52487 * 16 15 13 18 18 C 1.34777 * 125.64300 * 180.97245 * 17 16 15 19 19 O 1.21278 * 119.99854 * 179.69318 * 18 17 16 20 20 C 1.50703 * 120.00161 * 359.68625 * 18 17 16 21 21 O 1.42898 * 109.47171 * 180.02562 * 20 18 17 22 22 C 1.42902 * 114.00186 * 180.02562 * 21 20 18 23 23 C 1.53118 * 109.52066 * 269.87347 * 22 21 20 24 24 C 1.53049 * 109.27389 * 182.50425 * 23 22 21 25 25 N 1.46848 * 109.57549 * 59.08137 * 24 23 22 26 26 C 1.46900 * 110.99959 * 174.19512 * 25 24 23 27 27 C 1.46849 * 111.19872 * 298.29049 * 25 24 23 28 28 C 1.53040 * 109.52352 * 61.74143 * 27 25 24 29 29 C 1.47421 * 108.70522 * 0.70454 * 17 16 15 30 30 H 1.09000 * 109.47328 * 299.99599 * 1 2 3 31 31 H 1.09004 * 109.47050 * 59.99735 * 1 2 3 32 32 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00111 * 95.00202 * 4 2 1 34 34 H 0.96999 * 120.00189 * 180.02562 * 8 7 5 35 35 H 1.09002 * 110.71750 * 324.78358 * 15 13 2 36 36 H 1.09002 * 110.72362 * 87.87935 * 15 13 2 37 37 H 1.08995 * 109.98342 * 263.04794 * 16 15 13 38 38 H 1.08999 * 109.77397 * 141.88001 * 16 15 13 39 39 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 40 40 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 41 41 H 1.08996 * 109.51790 * 29.99821 * 22 21 20 42 42 H 1.09008 * 109.50062 * 302.37574 * 23 22 21 43 43 H 1.08992 * 109.50691 * 62.49795 * 23 22 21 44 44 H 1.09003 * 109.40346 * 299.06829 * 24 23 22 45 45 H 1.08991 * 109.45024 * 179.12400 * 24 23 22 46 46 H 1.08996 * 109.47037 * 184.21017 * 26 25 24 47 47 H 1.08992 * 109.46726 * 304.20880 * 26 25 24 48 48 H 1.08998 * 109.46841 * 64.21057 * 26 25 24 49 49 H 1.08996 * 109.46582 * 301.72992 * 27 25 24 50 50 H 1.08999 * 109.45929 * 181.75036 * 27 25 24 51 51 H 1.09001 * 109.50564 * 180.87821 * 28 27 25 52 52 H 1.09000 * 109.53163 * 60.78279 * 28 27 25 53 53 H 1.08995 * 110.37012 * 94.93884 * 29 17 16 54 54 H 1.09007 * 110.36516 * 217.15553 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6618 3.5090 8 7 2.7385 -0.0052 4.6426 9 14 3.0578 -2.4740 3.4247 10 1 4.4906 -2.6150 3.0607 11 1 2.8188 -3.1046 4.7477 12 1 2.2183 -3.1430 2.3985 13 6 2.0400 -0.7212 -1.2493 14 1 1.7468 -1.7710 -1.2388 15 6 3.5783 -0.5739 -1.3875 16 6 3.8020 -0.7165 -2.9077 17 7 2.5331 -0.3786 -3.5692 18 6 2.3101 -0.4002 -4.8982 19 8 1.2174 -0.1063 -5.3345 20 6 3.4187 -0.7893 -5.8420 21 8 2.9397 -0.7357 -7.1873 22 6 3.9179 -1.0893 -8.1671 23 6 4.6746 0.1657 -8.6107 24 6 5.6773 -0.2091 -9.7047 25 7 4.9643 -0.8023 -10.8432 26 6 5.8784 -1.0478 -11.9667 27 6 4.2698 -2.0352 -10.4508 28 6 3.2241 -1.7147 -9.3804 29 6 1.5433 -0.0188 -2.5376 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.0625 -0.4623 5.4344 35 1 3.9051 0.4048 -1.0360 36 1 4.0920 -1.3680 -0.8456 37 1 4.0841 -1.7414 -3.1482 38 1 4.5833 -0.0289 -3.2315 39 1 3.7509 -1.8022 -5.6144 40 1 4.2537 -0.0984 -5.7262 41 1 4.6194 -1.8055 -7.7394 42 1 3.9678 0.8977 -9.0016 43 1 5.2057 0.5905 -7.7591 44 1 6.3926 -0.9299 -9.3086 45 1 6.2067 0.6850 -10.0336 46 1 5.3122 -1.4172 -12.8217 47 1 6.3796 -0.1184 -12.2369 48 1 6.6215 -1.7899 -11.6749 49 1 4.9917 -2.7474 -10.0514 50 1 3.7771 -2.4674 -11.3218 51 1 2.7195 -2.6324 -9.0781 52 1 2.4933 -1.0134 -9.7833 53 1 1.5193 1.0616 -2.3954 54 1 0.5554 -0.3863 -2.8152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672234591.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:09 Heat of formation + Delta-G solvation = -85.860283 kcal Electronic energy + Delta-G solvation = -29827.959297 eV Core-core repulsion = 25798.992519 eV Total energy + Delta-G solvation = -4028.966778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.28317 -40.34307 -39.17787 -37.95877 -36.88989 -34.31330 -33.52990 -32.35248 -31.90045 -31.11598 -29.80160 -28.28316 -26.94928 -25.95323 -24.30214 -24.05211 -23.42105 -22.71761 -21.33234 -21.01292 -20.31577 -19.54414 -18.43622 -17.85782 -17.29326 -17.03807 -16.89878 -16.42015 -16.07361 -16.00427 -15.65083 -15.49473 -15.17342 -14.97774 -14.69027 -14.47749 -14.29843 -14.11289 -14.05294 -13.92462 -13.65678 -13.45930 -13.41662 -13.38725 -13.02652 -12.96552 -12.82984 -12.58724 -12.37503 -12.18947 -12.12224 -12.01384 -11.91655 -11.88835 -11.70948 -11.67756 -11.49374 -11.39280 -10.95640 -10.89147 -10.52872 -9.71252 -9.29820 -9.28237 -7.97325 -5.30269 1.40915 1.44746 1.51134 1.52039 1.62700 2.52804 2.78129 2.97708 3.31362 3.34454 3.57350 3.64877 3.77708 3.78693 3.84355 4.05900 4.09105 4.10281 4.15988 4.22358 4.31145 4.33341 4.35749 4.37991 4.48896 4.53889 4.56401 4.56681 4.66444 4.68394 4.72437 4.75144 4.85958 4.88011 4.93477 4.94970 4.99873 5.03316 5.04337 5.13490 5.18005 5.19111 5.26892 5.31278 5.36924 5.56737 5.82784 6.09928 6.10385 6.12756 6.26230 6.46370 7.07672 7.13277 7.88925 8.09021 9.24364 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.001797 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.833181 B =15580.744023 C =16054.458501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.186 3.814 3 H 0.048 0.952 4 N -0.745 5.745 5 C -0.223 4.223 6 H 0.054 0.946 7 C -0.066 4.066 8 N -0.987 5.987 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.304 1.304 12 H -0.252 1.252 13 C -0.097 4.097 14 H 0.086 0.914 15 C -0.120 4.120 16 C 0.099 3.901 17 N -0.616 5.616 18 C 0.522 3.478 19 O -0.577 6.577 20 C 0.054 3.946 21 O -0.387 6.387 22 C 0.086 3.914 23 C -0.138 4.138 24 C 0.061 3.939 25 N -0.565 5.565 26 C 0.026 3.974 27 C 0.063 3.937 28 C -0.114 4.114 29 C 0.120 3.880 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.366 0.634 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.031 0.969 49 H 0.045 0.955 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.061 0.939 53 H 0.069 0.931 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.258 -6.334 -33.128 35.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 H 0.066 0.934 4 N -0.388 5.388 5 C -0.354 4.354 6 H 0.072 0.928 7 C -0.257 4.257 8 N -0.638 5.638 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.231 1.231 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.105 0.895 15 C -0.158 4.158 16 C -0.022 4.022 17 N -0.350 5.350 18 C 0.311 3.689 19 O -0.457 6.457 20 C -0.025 4.025 21 O -0.306 6.306 22 C 0.029 3.971 23 C -0.176 4.176 24 C -0.067 4.067 25 N -0.290 5.290 26 C -0.122 4.122 27 C -0.064 4.064 28 C -0.152 4.152 29 C -0.003 4.003 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.106 0.894 51 H 0.096 0.904 52 H 0.080 0.920 53 H 0.087 0.913 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.146 -5.610 -33.543 35.217 hybrid contribution 0.629 -1.198 1.240 1.835 sum 9.775 -6.809 -32.303 34.429 Atomic orbital electron populations 1.22366 0.98027 1.01254 1.00585 1.20260 0.92370 0.95097 0.84489 0.93431 1.42674 1.79979 1.09451 1.06709 1.18986 1.34655 0.94292 0.87449 0.92764 1.25479 1.02605 1.02491 0.95126 1.69892 1.54912 1.37740 1.01237 0.85416 0.78832 0.80772 0.76764 1.19906 1.23114 1.17646 1.22492 0.96477 1.00168 0.92513 0.89525 1.22610 0.94887 1.03760 0.94501 1.22346 0.85099 1.02636 0.92140 1.48546 1.14727 1.67217 1.04546 1.20577 0.89472 0.77168 0.81661 1.90710 1.27633 1.50370 1.76947 1.22302 0.94191 1.03896 0.82139 1.88036 1.38492 1.90137 1.13941 1.22368 0.90047 0.96159 0.88547 1.22087 0.98590 0.98153 0.98739 1.22042 0.94554 0.99812 0.90275 1.61921 1.30821 1.27775 1.08507 1.22375 0.95074 1.01407 0.93354 1.22039 0.95834 0.90430 0.98143 1.21636 0.98480 1.01192 0.93863 1.22142 0.92554 0.99620 0.86020 0.94869 0.91524 0.93115 0.80089 0.93568 0.90842 0.89378 0.88736 0.88811 0.87515 0.87734 0.90232 0.92143 0.90091 0.93737 0.89697 0.90808 0.90814 0.95001 0.93701 0.89399 0.90397 0.92048 0.91293 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.41 9.27 71.98 0.67 -4.74 16 2 C 0.19 6.41 2.42 44.99 0.11 6.52 16 3 H 0.05 1.75 8.02 -2.39 -0.02 1.73 16 4 N -0.74 -32.02 4.78 -322.94 -1.54 -33.56 16 5 C -0.22 -12.14 10.41 84.03 0.87 -11.27 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 8 N -0.99 -62.24 13.97 21.65 0.30 -61.94 16 9 Si 0.95 43.69 27.74 68.60 1.90 45.59 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 13 C -0.10 -2.52 2.65 -9.40 -0.02 -2.55 16 14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.12 -2.63 6.28 31.78 0.20 -2.43 16 16 C 0.10 1.57 6.48 86.73 0.56 2.13 16 17 N -0.62 -13.78 3.33 -811.81 -2.70 -16.48 16 18 C 0.52 13.36 7.93 87.66 0.69 14.06 16 19 O -0.58 -20.84 16.75 16.01 0.27 -20.57 16 20 C 0.05 0.90 5.42 71.24 0.39 1.29 16 21 O -0.39 -8.46 9.53 -129.94 -1.24 -9.70 16 22 C 0.09 1.26 2.68 30.67 0.08 1.34 16 23 C -0.14 -1.84 5.72 30.65 0.18 -1.67 16 24 C 0.06 0.65 5.46 86.33 0.47 1.12 16 25 N -0.56 -6.89 4.91 -922.59 -4.53 -11.42 16 26 C 0.03 0.21 9.59 127.69 1.22 1.44 16 27 C 0.06 0.70 5.46 86.33 0.47 1.17 16 28 C -0.11 -1.67 5.75 30.65 0.18 -1.49 16 29 C 0.12 3.05 5.27 86.85 0.46 3.51 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.87 7.23 -2.38 -0.02 1.86 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.37 14.96 5.66 -92.71 -0.52 14.44 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 40 H 0.10 1.19 7.95 -2.39 -0.02 1.17 16 41 H 0.08 0.82 7.79 -2.39 -0.02 0.80 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.08 0.87 7.95 -2.39 -0.02 0.85 16 44 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 48 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 51 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 54 H 0.07 1.91 7.94 -2.38 -0.02 1.90 16 Total: -1.00 -76.06 421.18 -0.28 -76.35 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.26 Total: 26.60 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 7.00 Total: 5.13 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -8.47 Total: -123.41 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.97 Total: -30.27 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.59 kcal Total: -76.06 -0.28 -76.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672234591.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.514 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds