Wall clock time and date at job start Sat Apr 11 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47608 * 2 1 4 4 C 1.53006 * 109.46933 * 120.00214 * 2 1 3 5 5 N 1.46900 * 109.46888 * 294.99828 * 4 2 1 6 6 C 1.47016 * 111.00156 * 293.63630 * 5 4 2 7 7 C 1.53096 * 109.25735 * 177.60785 * 6 5 4 8 8 O 1.43013 * 109.26246 * 56.84712 * 7 6 5 9 9 C 1.43013 * 113.73708 * 301.33028 * 8 7 6 10 10 C 1.47013 * 111.00411 * 170.00154 * 5 4 2 11 11 C 1.50695 * 109.47290 * 239.99554 * 2 1 3 12 12 O 1.21285 * 120.00365 * 240.00369 * 11 2 1 13 13 N 1.34775 * 119.99916 * 60.00403 * 11 2 1 14 14 C 1.46501 * 120.00384 * 179.97438 * 13 11 2 15 15 H 1.09004 * 110.77769 * 36.78433 * 14 13 11 16 16 C 1.54324 * 110.72010 * 273.54785 * 14 13 11 17 17 N 1.47020 * 107.39983 * 263.75014 * 16 14 13 18 18 C 1.36946 * 125.64749 * 181.10549 * 17 16 14 19 19 H 1.08003 * 119.99807 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99708 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00158 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99504 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47439 * 90.00300 * 22 20 18 24 24 H 1.48507 * 109.47006 * 210.00109 * 22 20 18 25 25 H 1.48501 * 109.47483 * 330.00121 * 22 20 18 26 26 C 1.47743 * 108.53125 * 1.18235 * 17 16 14 27 27 C 1.54909 * 104.83995 * 335.74644 * 26 17 16 28 28 C 1.52996 * 111.01103 * 279.01937 * 27 26 17 29 29 C 1.53005 * 111.03408 * 155.18333 * 27 26 17 30 30 H 1.09005 * 109.47245 * 60.00265 * 1 2 3 31 31 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47217 * 300.00090 * 1 2 3 33 33 H 1.08996 * 109.47058 * 54.99466 * 4 2 1 34 34 H 1.08994 * 109.47340 * 175.00276 * 4 2 1 35 35 H 1.08998 * 109.50657 * 297.54001 * 6 5 4 36 36 H 1.09001 * 109.50500 * 57.67292 * 6 5 4 37 37 H 1.09003 * 109.50864 * 296.91027 * 7 6 5 38 38 H 1.09003 * 109.54192 * 176.80491 * 7 6 5 39 39 H 1.08995 * 109.50864 * 298.72895 * 9 8 7 40 40 H 1.08998 * 109.53969 * 178.62186 * 9 8 7 41 41 H 1.09006 * 109.50613 * 302.32771 * 10 5 4 42 42 H 1.08999 * 109.50700 * 62.40836 * 10 5 4 43 43 H 0.97003 * 120.00279 * 0.02562 * 13 11 2 44 44 H 1.09002 * 109.88322 * 23.24544 * 16 14 13 45 45 H 1.09000 * 109.88025 * 144.25709 * 16 14 13 46 46 H 0.96997 * 119.99987 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.29227 * 216.94505 * 26 17 16 48 48 H 1.08996 * 110.53057 * 94.67717 * 26 17 16 49 49 H 1.08989 * 109.47198 * 172.19304 * 28 27 26 50 50 H 1.08999 * 109.47117 * 292.20300 * 28 27 26 51 51 H 1.09002 * 109.46824 * 52.19644 * 28 27 26 52 52 H 1.09003 * 109.47176 * 307.78833 * 29 27 26 53 53 H 1.08994 * 109.47072 * 67.79050 * 29 27 26 54 54 H 1.09001 * 109.46666 * 187.79285 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.3403 1.3352 2.4934 7 6 1.8625 2.1156 3.7208 8 8 2.0958 1.3352 4.8963 9 6 1.4389 0.0649 4.8837 10 6 1.9125 -0.7363 3.6682 11 6 2.0323 -0.7105 -1.2303 12 8 2.7295 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4545 14 6 2.1956 -0.9403 -3.6506 15 1 2.2113 -2.0191 -3.4953 16 6 3.5958 -0.4250 -4.0446 17 7 3.4109 0.6033 -5.0790 18 6 4.4136 1.2919 -5.7081 19 1 4.1730 2.0315 -6.4575 20 6 5.7392 1.0394 -5.3825 21 7 6.0323 0.1378 -4.4695 22 14 7.1068 1.9793 -6.2401 23 1 7.4136 3.2148 -5.4753 24 1 8.3216 1.1282 -6.3136 25 1 6.6727 2.3420 -7.6131 26 6 1.9632 0.7688 -5.3230 27 6 1.3309 -0.5763 -4.8865 28 6 1.4730 -1.6314 -5.9853 29 6 -0.1364 -0.3917 -4.4940 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6052 -1.7198 1.2952 34 1 3.1262 -0.7995 1.2057 35 1 3.4161 1.1738 2.5608 36 1 2.1124 1.9017 1.5905 37 1 0.7966 2.3237 3.6276 38 1 2.4117 3.0545 3.7923 39 1 0.3608 0.2133 4.8244 40 1 1.6817 -0.4801 5.7959 41 1 1.3723 -1.6820 3.6228 42 1 2.9814 -0.9315 3.7539 43 1 1.1494 0.5389 -2.5436 44 1 4.0895 0.0087 -3.1749 45 1 4.1949 -1.2452 -4.4401 46 1 6.9586 -0.0383 -4.2417 47 1 1.7765 0.9498 -6.3816 48 1 1.5656 1.5873 -4.7231 49 1 1.1476 -2.5992 -5.6039 50 1 0.8567 -1.3515 -6.8396 51 1 2.5161 -1.6951 -6.2951 52 1 -0.2183 0.4113 -3.7614 53 1 -0.7198 -0.1372 -5.3788 54 1 -0.5162 -1.3177 -4.0622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675487319.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:35 Heat of formation + Delta-G solvation = -77.075086 kcal Electronic energy + Delta-G solvation = -31593.654544 eV Core-core repulsion = 27565.068721 eV Total energy + Delta-G solvation = -4028.585823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46665 -40.54131 -39.52607 -37.19853 -35.70669 -34.69190 -33.75813 -32.60493 -32.12612 -29.84051 -28.83950 -28.04116 -27.41483 -26.19548 -25.26745 -25.02801 -23.54061 -22.02027 -21.39479 -20.84651 -19.98100 -18.69458 -18.38733 -17.44189 -17.12370 -17.07019 -16.75035 -16.48712 -16.05897 -15.94092 -15.75553 -15.53729 -15.36509 -15.25710 -14.76753 -14.51925 -14.31571 -13.94308 -13.76777 -13.63551 -13.44339 -13.16565 -13.13580 -13.01613 -12.95649 -12.82643 -12.68712 -12.59614 -12.56505 -12.32269 -12.22147 -12.12617 -11.86163 -11.79455 -11.72755 -11.50603 -11.46367 -11.30307 -10.82745 -10.68919 -10.63200 -9.96225 -9.50031 -8.89986 -7.84354 -5.21023 1.42341 1.44433 1.53322 1.68932 2.13906 2.47727 2.78073 2.97897 3.33735 3.50005 3.63542 3.70628 3.80502 3.91019 3.96681 4.01682 4.04451 4.08639 4.19220 4.27471 4.31029 4.37147 4.40764 4.53569 4.58932 4.67669 4.70862 4.74016 4.75343 4.82577 4.86203 4.89262 4.90948 4.96125 5.01652 5.02912 5.07021 5.09881 5.15284 5.17626 5.33133 5.37167 5.40468 5.45144 5.57506 5.71926 5.76953 5.81943 5.89032 6.16351 6.19107 6.62418 7.07043 7.32966 7.77073 8.41741 9.24471 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003000 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.792832 B = 9331.798255 C =10826.838740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 H 0.103 0.897 4 C 0.083 3.917 5 N -0.523 5.523 6 C 0.008 3.992 7 C 0.067 3.933 8 O -0.408 6.408 9 C 0.067 3.933 10 C 0.014 3.986 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.697 5.697 14 C 0.139 3.861 15 H 0.073 0.927 16 C 0.194 3.806 17 N -0.620 5.620 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.954 5.954 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.264 1.264 26 C 0.137 3.863 27 C -0.073 4.073 28 C -0.124 4.124 29 C -0.123 4.123 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.012 0.988 35 H 0.022 0.978 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.410 0.590 44 H -0.003 1.003 45 H 0.001 0.999 46 H 0.242 0.758 47 H 0.048 0.952 48 H 0.033 0.967 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.027 0.973 52 H 0.065 0.935 53 H 0.078 0.922 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.041 1.501 13.160 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.046 4.046 5 N -0.248 5.248 6 C -0.121 4.121 7 C -0.009 4.009 8 O -0.327 6.327 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.348 5.348 14 C 0.032 3.968 15 H 0.091 0.909 16 C 0.068 3.932 17 N -0.346 5.346 18 C -0.363 4.363 19 H 0.105 0.895 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.189 1.189 26 C 0.012 3.988 27 C -0.075 4.075 28 C -0.182 4.182 29 C -0.181 4.181 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.041 0.959 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.015 0.985 45 H 0.019 0.981 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.046 0.954 52 H 0.084 0.916 53 H 0.096 0.904 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.743 0.983 13.341 23.027 hybrid contribution 2.570 0.164 -0.770 2.688 sum -16.173 1.147 12.570 20.515 Atomic orbital electron populations 1.21624 0.89436 1.02904 1.03984 1.21226 1.00352 1.00151 0.90061 0.87944 1.21721 0.97065 0.97152 0.88621 1.62267 1.56991 1.03843 1.01711 1.22959 0.96019 0.91897 1.01186 1.22751 1.01853 0.93792 0.82527 1.87959 1.73740 1.30346 1.40683 1.22779 0.97392 0.83376 0.97461 1.22883 0.99566 0.98518 0.90457 1.21222 0.79052 0.84163 0.85746 1.90683 1.39757 1.29206 1.87495 1.45828 1.52695 1.31704 1.04574 1.22025 0.93994 0.95814 0.84937 0.90877 1.21058 0.91892 0.90198 0.90088 1.44758 1.01501 1.44008 1.44381 1.19476 0.85929 1.15074 1.15831 0.89473 1.25682 0.99744 1.00606 1.00363 1.70253 1.16822 1.37227 1.36016 0.85094 0.78525 0.77270 0.78556 1.21419 1.22697 1.18862 1.21966 0.83133 0.94933 0.98740 1.21973 0.96122 0.95904 0.93486 1.21597 1.00985 0.97789 0.97827 1.21654 0.91644 1.02432 1.02334 0.90991 0.92578 0.89238 0.90137 0.96966 0.95913 0.88446 0.90777 0.87320 0.90998 0.86895 0.88167 0.95557 0.75241 0.98510 0.98067 0.94920 0.93384 0.94880 0.91642 0.90253 0.95356 0.91576 0.90350 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.98 71.98 0.65 -1.37 16 2 C -0.10 -2.30 2.65 -11.54 -0.03 -2.33 16 3 H 0.10 2.32 6.30 -2.39 -0.02 2.30 16 4 C 0.08 2.10 3.69 86.31 0.32 2.42 16 5 N -0.52 -10.54 4.18 -895.22 -3.74 -14.28 16 6 C 0.01 0.15 5.44 86.31 0.47 0.62 16 7 C 0.07 1.11 7.01 72.01 0.50 1.62 16 8 O -0.41 -8.19 10.83 -148.98 -1.61 -9.80 16 9 C 0.07 1.02 7.01 72.01 0.50 1.52 16 10 C 0.01 0.25 5.64 86.31 0.49 0.74 16 11 C 0.51 17.24 7.15 87.66 0.63 17.86 16 12 O -0.59 -25.92 15.65 -3.04 -0.05 -25.96 16 13 N -0.70 -22.09 4.46 -436.91 -1.95 -24.04 16 14 C 0.14 5.30 2.51 46.18 0.12 5.42 16 15 H 0.07 3.00 7.61 -2.38 -0.02 2.98 16 16 C 0.19 10.11 4.79 86.73 0.42 10.52 16 17 N -0.62 -31.46 3.39 -691.16 -2.34 -33.80 16 18 C -0.23 -13.12 10.29 84.03 0.86 -12.26 16 19 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 21 N -0.95 -60.58 10.31 21.65 0.22 -60.35 16 22 Si 0.98 47.00 29.55 68.60 2.03 49.02 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.14 5.12 6.16 86.79 0.53 5.66 16 27 C -0.07 -2.25 0.83 -50.79 -0.04 -2.30 16 28 C -0.12 -3.76 8.57 71.98 0.62 -3.15 16 29 C -0.12 -2.51 8.22 71.98 0.59 -1.91 16 30 H 0.07 0.96 7.57 -2.38 -0.02 0.94 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.28 7.75 -2.39 -0.02 1.26 16 33 H 0.08 2.06 8.04 -2.39 -0.02 2.05 16 34 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 1.75 6.29 -2.39 -0.02 1.74 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.54 8.09 -2.38 -0.02 1.52 16 42 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.41 10.38 6.32 -92.71 -0.59 9.80 16 44 H 0.00 -0.20 7.41 -2.39 -0.02 -0.22 16 45 H 0.00 0.07 7.37 -2.39 -0.02 0.05 16 46 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 48 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 52 H 0.07 1.16 6.38 -2.39 -0.02 1.15 16 53 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.05 410.82 -0.08 -78.13 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.28 Total: 21.75 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 7.09 Total: 19.35 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -7.81 Total: -132.48 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.66 Total: -35.77 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -78.05 -0.08 -78.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675487319.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.052 kcal (2) G-P(sol) polarization free energy of solvation -78.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds