Wall clock time and date at job start Sat Apr 11 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46843 * 2 1 4 4 N 1.46496 * 109.47133 * 240.00098 * 2 1 3 5 5 C 1.36940 * 120.00365 * 84.99966 * 4 2 1 6 6 H 1.08000 * 119.99477 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00269 * 180.02562 * 5 4 2 8 8 N 1.31626 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47129 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47145 * 119.99422 * 9 7 5 12 12 H 1.48501 * 109.47053 * 239.99823 * 9 7 5 13 13 C 1.53003 * 109.47395 * 119.99823 * 2 1 3 14 14 H 1.08998 * 109.55146 * 299.87408 * 13 2 1 15 15 C 1.53293 * 109.51032 * 179.74784 * 13 2 1 16 16 N 1.47159 * 108.38067 * 187.77367 * 15 13 2 17 17 C 1.34775 * 120.98147 * 230.51428 * 16 15 13 18 18 O 1.21276 * 120.00076 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99851 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46950 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47298 * 179.97438 * 20 19 17 22 22 N 1.46898 * 109.47336 * 179.97438 * 21 20 19 23 23 C 1.48533 * 110.99710 * 52.60387 * 22 21 20 24 24 C 1.54940 * 103.22644 * 159.71916 * 23 22 21 25 25 C 1.54600 * 102.92205 * 322.58843 * 24 23 22 26 26 C 1.47901 * 110.99993 * 170.00051 * 22 21 20 27 27 C 1.47147 * 118.03490 * 50.53818 * 16 15 13 28 28 C 1.53299 * 108.38403 * 309.46199 * 27 16 15 29 29 O 1.42956 * 109.22214 * 52.30626 * 28 27 16 30 30 H 1.08997 * 109.47522 * 60.00240 * 1 2 3 31 31 H 1.09001 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46952 * 299.99644 * 1 2 3 33 33 H 0.97001 * 120.00237 * 264.99982 * 4 2 1 34 34 H 0.96993 * 120.00210 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.68245 * 307.49233 * 15 13 2 36 36 H 1.08992 * 109.68304 * 68.05197 * 15 13 2 37 37 H 1.09000 * 109.46724 * 299.99263 * 19 17 16 38 38 H 1.08999 * 109.47246 * 59.99781 * 19 17 16 39 39 H 1.09005 * 109.47173 * 299.99635 * 20 19 17 40 40 H 1.08999 * 109.47244 * 59.99879 * 20 19 17 41 41 H 1.09005 * 109.46852 * 300.00005 * 21 20 19 42 42 H 1.08999 * 109.46930 * 59.99860 * 21 20 19 43 43 H 1.08997 * 110.66815 * 278.15535 * 23 22 21 44 44 H 1.08998 * 110.67043 * 41.28701 * 23 22 21 45 45 H 1.08995 * 110.72394 * 204.22970 * 24 23 22 46 46 H 1.08998 * 110.72379 * 80.94083 * 24 23 22 47 47 H 1.09007 * 110.30594 * 263.03942 * 25 24 23 48 48 H 1.08992 * 110.39659 * 140.91813 * 25 24 23 49 49 H 1.09003 * 109.91697 * 333.50781 * 26 22 21 50 50 H 1.08991 * 109.92038 * 94.60646 * 26 22 21 51 51 H 1.09006 * 109.68272 * 189.73995 * 27 16 15 52 52 H 1.09000 * 109.68727 * 69.18721 * 27 16 15 53 53 H 1.08996 * 109.51065 * 292.37638 * 28 27 16 54 54 H 1.09004 * 109.55368 * 172.25592 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6113 -0.6620 -3.5093 8 7 2.9244 -1.9391 -3.4502 9 14 2.7891 0.2697 -5.1186 10 1 2.3742 1.6819 -4.9214 11 1 4.2058 0.2268 -5.5615 12 1 1.9279 -0.3590 -6.1522 13 6 2.0401 -0.7212 1.2493 14 1 1.6793 -0.2071 2.1401 15 6 3.5730 -0.7272 1.2469 16 7 4.0354 -1.5828 2.3514 17 6 4.9545 -1.1415 3.2328 18 8 5.4128 -0.0241 3.1227 19 6 5.4126 -2.0367 4.3553 20 6 6.4509 -1.2998 5.2038 21 6 6.9156 -2.2083 6.3438 22 7 7.9129 -1.5011 7.1581 23 6 7.4012 -0.1768 7.5946 24 6 8.2973 0.1661 8.8112 25 6 8.4864 -1.2056 9.4988 26 6 8.2094 -2.2480 8.3997 27 6 3.4650 -2.9345 2.4646 28 6 1.9372 -2.8209 2.4075 29 8 1.5641 -2.0693 1.2502 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6317 -1.1526 34 1 3.2477 -2.3963 -4.2421 35 1 3.9371 -1.1230 0.2988 36 1 3.9443 0.2877 1.3886 37 1 4.5588 -2.3052 4.9774 38 1 5.8585 -2.9406 3.9403 39 1 7.3046 -1.0316 4.5815 40 1 6.0054 -0.3957 5.6188 41 1 6.0616 -2.4762 6.9661 42 1 7.3609 -3.1127 5.9291 43 1 7.5258 0.5634 6.8043 44 1 6.3558 -0.2481 7.8949 45 1 7.7922 0.8653 9.4775 46 1 9.2558 0.5683 8.4830 47 1 7.7749 -1.3199 10.3167 48 1 9.5065 -1.3077 9.8687 49 1 7.3525 -2.8617 8.6776 50 1 9.0859 -2.8791 8.2531 51 1 3.7647 -3.3813 3.4126 52 1 3.8182 -3.5524 1.6391 53 1 1.5762 -2.3145 3.3026 54 1 1.4992 -3.8175 2.3513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675627333.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:47 Heat of formation + Delta-G solvation = -88.447429 kcal Electronic energy + Delta-G solvation = -30352.801393 eV Core-core repulsion = 26323.722428 eV Total energy + Delta-G solvation = -4029.078965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47269 -40.01767 -39.52774 -37.09402 -35.74954 -35.40372 -34.16839 -32.22803 -31.47614 -30.14045 -29.83336 -29.02490 -27.03325 -25.81635 -24.91539 -23.86713 -22.98433 -21.71354 -21.31841 -21.18645 -20.05786 -19.31268 -18.30067 -17.63331 -17.17883 -17.10182 -16.85972 -16.55601 -16.37793 -16.03367 -15.94128 -15.59507 -15.11594 -15.00721 -14.91158 -14.57132 -14.41987 -14.00812 -13.97025 -13.69285 -13.48372 -13.40064 -13.09787 -13.02492 -12.80899 -12.67869 -12.52276 -12.50126 -12.32988 -12.23566 -12.13437 -12.10325 -11.95842 -11.78954 -11.68772 -11.64051 -11.50314 -11.40788 -11.08744 -10.96170 -10.78490 -9.58355 -9.35628 -8.95134 -7.90633 -5.17630 1.47098 1.47528 1.57180 1.57344 1.85246 2.57139 2.81922 3.02860 3.43210 3.44792 3.71340 3.74097 3.80558 3.93479 3.98251 3.99844 4.01630 4.04977 4.18354 4.20559 4.27516 4.35099 4.36427 4.39739 4.50461 4.53843 4.61129 4.63069 4.66815 4.71457 4.74593 4.81490 4.85395 4.87569 4.91758 4.97315 5.03382 5.07381 5.09075 5.11678 5.20537 5.23140 5.26584 5.31768 5.37290 5.53538 5.60313 5.95667 6.12202 6.27446 6.33554 6.37094 7.10229 7.38395 8.14534 8.39998 9.32786 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.002044 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.997248 B =13696.568966 C =14205.891746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.171 3.829 3 H 0.056 0.944 4 N -0.725 5.725 5 C -0.234 4.234 6 H 0.075 0.925 7 C -0.077 4.077 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.095 3.905 14 H 0.076 0.924 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.506 3.494 18 O -0.590 6.590 19 C -0.125 4.125 20 C -0.097 4.097 21 C 0.053 3.947 22 N -0.539 5.539 23 C 0.031 3.969 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.033 3.967 27 C 0.069 3.931 28 C 0.040 3.960 29 O -0.385 6.385 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.378 0.622 34 H 0.248 0.752 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.137 0.863 52 H 0.070 0.930 53 H 0.069 0.931 54 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -4.419 29.462 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 H 0.074 0.926 4 N -0.366 5.366 5 C -0.366 4.366 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.618 5.618 9 Si 0.798 3.202 10 H -0.192 1.192 11 H -0.225 1.225 12 H -0.222 1.222 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.030 4.030 16 N -0.348 5.348 17 C 0.296 3.704 18 O -0.470 6.470 19 C -0.165 4.165 20 C -0.135 4.135 21 C -0.074 4.074 22 N -0.264 5.264 23 C -0.097 4.097 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.095 4.095 27 C -0.053 4.053 28 C -0.037 4.037 29 O -0.304 6.304 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.154 0.846 52 H 0.088 0.912 53 H 0.087 0.913 54 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.483 -3.724 28.827 29.579 hybrid contribution -0.290 0.188 -1.040 1.096 sum 5.194 -3.536 27.786 28.488 Atomic orbital electron populations 1.22162 0.96897 1.01158 1.00515 1.20514 0.93762 0.94552 0.84965 0.92584 1.42483 1.77971 1.10479 1.05695 1.19661 1.34421 0.94095 0.88388 0.90742 1.25482 1.03338 0.96872 1.01198 1.69834 1.52809 1.10082 1.29072 0.85146 0.76581 0.78238 0.80263 1.19155 1.22451 1.22206 1.22573 0.91359 0.84085 0.98423 0.90631 1.22000 0.95522 0.95967 0.89467 1.48362 1.41786 1.16456 1.28204 1.21562 0.77683 0.87784 0.83334 1.90678 1.57457 1.23252 1.75655 1.21680 1.01492 0.98808 0.94539 1.21278 0.97719 0.98239 0.96297 1.22282 0.93784 0.97013 0.94368 1.64768 1.40518 1.03506 1.17588 1.23237 0.97292 0.91750 0.97387 1.22503 1.00011 0.97608 0.96188 1.22408 1.02928 0.93860 0.97494 1.22933 1.01324 0.96515 0.88723 1.22736 0.94976 0.82240 1.05312 1.23240 0.93468 0.98351 0.88595 1.88064 1.75382 1.23497 1.43461 0.94340 0.93496 0.91418 0.78969 0.94285 0.92661 0.90581 0.85645 0.86391 0.93057 0.92504 0.93040 0.89586 0.91399 0.93419 0.89969 0.91342 0.90491 0.90365 0.92921 0.90271 0.84568 0.91181 0.91310 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 9.35 71.98 0.67 -4.67 16 2 C 0.17 6.87 2.73 44.99 0.12 7.00 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -36.89 4.28 -322.94 -1.38 -38.28 16 5 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 6 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 8 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 9 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 13 C 0.09 3.19 2.53 30.69 0.08 3.27 16 14 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.09 3.42 5.86 86.35 0.51 3.92 16 16 N -0.61 -17.25 3.02 -817.34 -2.47 -19.72 16 17 C 0.51 14.07 7.71 87.66 0.68 14.74 16 18 O -0.59 -22.11 15.45 -3.02 -0.05 -22.15 16 19 C -0.13 -2.02 4.07 29.85 0.12 -1.90 16 20 C -0.10 -1.83 4.16 30.59 0.13 -1.70 16 21 C 0.05 0.75 5.03 86.30 0.43 1.19 16 22 N -0.54 -8.90 5.40 -883.03 -4.76 -13.67 16 23 C 0.03 0.50 5.10 86.65 0.44 0.94 16 24 C -0.13 -1.57 7.06 31.80 0.22 -1.34 16 25 C -0.13 -1.33 6.93 31.47 0.22 -1.11 16 26 C 0.03 0.40 6.70 86.45 0.58 0.98 16 27 C 0.07 1.37 6.54 86.36 0.56 1.93 16 28 C 0.04 0.83 6.98 72.08 0.50 1.34 16 29 O -0.39 -12.50 9.22 -148.98 -1.37 -13.87 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.77 7.68 -2.39 -0.02 1.76 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.38 20.93 7.20 -92.71 -0.67 20.26 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.06 2.46 7.26 -2.39 -0.02 2.44 16 36 H 0.08 3.00 7.08 -2.39 -0.02 2.98 16 37 H 0.13 1.20 7.66 -2.39 -0.02 1.18 16 38 H 0.12 1.42 8.02 -2.39 -0.02 1.40 16 39 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 40 H 0.06 1.23 6.75 -2.39 -0.02 1.21 16 41 H 0.05 0.57 7.81 -2.38 -0.02 0.55 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 44 H 0.05 0.72 8.00 -2.39 -0.02 0.70 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.05 0.55 7.57 -2.39 -0.02 0.53 16 50 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 51 H 0.14 1.36 6.05 -2.38 -0.01 1.35 16 52 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 53 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -75.42 416.26 -0.96 -76.38 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.19 Total: 33.49 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.57 Total: 8.29 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -8.33 Total: -131.49 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.42 Total: -36.02 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -75.42 -0.96 -76.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675627333.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.066 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds