Wall clock time and date at job start Sat Apr 11 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00297 * 2 1 4 4 O 1.21283 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00228 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47383 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47395 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47395 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47620 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99465 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00028 * 179.97438 * 9 8 7 12 12 C 1.46920 * 120.63434 * 4.93721 * 11 9 8 13 13 C 1.53200 * 108.77868 * 126.41233 * 12 11 9 14 14 C 1.53045 * 109.30787 * 54.63745 * 13 12 11 15 15 C 1.53047 * 109.53627 * 298.63699 * 14 13 12 16 16 C 1.46931 * 120.62860 * 184.96374 * 11 9 8 17 17 H 1.08994 * 109.58770 * 113.65583 * 16 11 9 18 18 C 1.53005 * 109.58494 * 353.37111 * 16 11 9 19 19 H 1.09000 * 109.46677 * 54.17738 * 18 16 11 20 20 C 1.52995 * 109.46662 * 174.17754 * 18 16 11 21 21 N 1.46500 * 109.47086 * 294.17623 * 18 16 11 22 22 C 1.36934 * 119.99623 * 154.99989 * 21 18 16 23 23 H 1.07995 * 120.00204 * 0.02562 * 22 21 18 24 24 C 1.38819 * 119.99681 * 179.72689 * 22 21 18 25 25 N 1.31612 * 119.99989 * 0.27146 * 24 22 21 26 26 Si 1.86794 * 119.99657 * 180.27697 * 24 22 21 27 27 H 1.48500 * 109.47590 * 60.00051 * 26 24 22 28 28 H 1.48501 * 109.47036 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47499 * 299.99679 * 26 24 22 30 30 H 1.08993 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47193 * 300.00509 * 1 2 3 32 32 H 1.09007 * 109.46942 * 59.99813 * 1 2 3 33 33 H 0.96998 * 119.99664 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47526 * 59.99969 * 5 3 2 35 35 H 1.09003 * 109.47334 * 299.99833 * 5 3 2 36 36 H 1.09007 * 109.47351 * 59.99765 * 6 5 3 37 37 H 1.09007 * 109.47169 * 300.00000 * 6 5 3 38 38 H 1.08998 * 109.47319 * 60.00054 * 7 6 5 39 39 H 1.09003 * 109.47530 * 299.99925 * 7 6 5 40 40 H 1.09007 * 109.47351 * 60.00012 * 8 7 6 41 41 H 1.09007 * 109.47169 * 300.00247 * 8 7 6 42 42 H 1.09003 * 109.59033 * 246.20170 * 12 11 9 43 43 H 1.09003 * 109.58738 * 6.48862 * 12 11 9 44 44 H 1.08994 * 109.49886 * 174.58947 * 13 12 11 45 45 H 1.09000 * 109.49458 * 294.68771 * 13 12 11 46 46 H 1.08996 * 109.45951 * 58.65796 * 14 13 12 47 47 H 1.08998 * 109.45792 * 178.61924 * 14 13 12 48 48 H 1.09000 * 109.49534 * 301.41704 * 15 14 13 49 49 H 1.09005 * 109.49251 * 181.31850 * 15 14 13 50 50 H 1.08996 * 109.47312 * 65.67945 * 20 18 16 51 51 H 1.09003 * 109.46727 * 185.67442 * 20 18 16 52 52 H 1.08999 * 109.47442 * 305.67407 * 20 18 16 53 53 H 0.97002 * 120.00080 * 335.00347 * 21 18 16 54 54 H 0.96998 * 120.00277 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1559 2.6096 0.0002 7 6 5.6859 2.6096 0.0002 8 6 6.1959 4.0521 0.0017 9 6 7.7030 4.0521 0.0023 10 8 8.3093 3.0018 0.0022 11 7 8.3768 5.2193 0.0031 12 6 7.6603 6.4973 0.1120 13 6 8.2552 7.2987 1.2743 14 6 9.7655 7.4401 1.0707 15 6 10.4125 6.0532 1.0590 16 6 9.8420 5.2378 -0.1056 17 1 10.1324 5.6951 -1.0514 18 6 10.3792 3.8066 -0.0414 19 1 9.8845 3.1986 -0.7989 20 6 11.8872 3.8160 -0.2998 21 7 10.1145 3.2447 1.2853 22 6 10.0179 1.8884 1.4476 23 1 10.1373 1.2330 0.5976 24 6 9.7727 1.3557 2.7058 25 7 9.6277 2.1544 3.7418 26 14 9.6487 -0.4948 2.9285 27 1 10.9248 -1.1302 2.5124 28 1 9.3846 -0.8049 4.3565 29 1 8.5387 -1.0206 2.0938 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 4.0089 0.6535 -0.8908 35 1 4.0096 0.6531 0.8892 36 1 3.7929 3.1230 0.8907 37 1 3.7923 3.1241 -0.8894 38 1 6.0492 2.0963 -0.8900 39 1 6.0492 2.0953 0.8900 40 1 5.8326 4.5651 0.8922 41 1 5.8326 4.5668 -0.8879 42 1 7.7729 7.0596 -0.8149 43 1 6.6031 6.3087 0.2989 44 1 7.7982 8.2876 1.3059 45 1 8.0617 6.7777 2.2120 46 1 9.9587 7.9390 0.1211 47 1 10.1876 8.0309 1.8837 48 1 10.1986 5.5441 1.9988 49 1 11.4908 6.1559 0.9375 50 1 12.3917 4.3390 0.5126 51 1 12.2528 2.7906 -0.3541 52 1 12.0913 4.3250 -1.2417 53 1 10.0075 3.8334 2.0489 54 1 9.4568 1.7822 4.6210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689911550.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:20 Heat of formation + Delta-G solvation = -67.404792 kcal Electronic energy + Delta-G solvation = -31578.905603 eV Core-core repulsion = 27550.739115 eV Total energy + Delta-G solvation = -4028.166488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40945 -40.69774 -38.32388 -36.93778 -35.98200 -35.52969 -34.06992 -33.56881 -31.77153 -31.15001 -29.65380 -28.30247 -26.45394 -25.71234 -25.11447 -24.36044 -22.40706 -21.78016 -21.33459 -21.04081 -19.53423 -18.92995 -18.10273 -17.47389 -17.13590 -16.90345 -16.68805 -16.40111 -16.27856 -15.66566 -15.57426 -15.34959 -14.89389 -14.84393 -14.63786 -14.56032 -14.17974 -14.02833 -13.76510 -13.58348 -13.39137 -13.28532 -13.07080 -13.03618 -12.96855 -12.73486 -12.60121 -12.42478 -12.23896 -12.20088 -12.13335 -12.04289 -11.87136 -11.67860 -11.49468 -11.48259 -11.30794 -11.13627 -10.94647 -10.73710 -10.14440 -9.54881 -9.20434 -8.54466 -7.70717 -4.88567 1.45275 1.48299 1.53871 1.61084 2.13929 2.27544 2.42091 2.71005 3.62757 3.69444 3.82711 3.93156 3.98805 4.01096 4.05910 4.12771 4.20654 4.33245 4.40231 4.41086 4.41477 4.47782 4.53616 4.59707 4.63197 4.70103 4.74375 4.83391 4.85592 4.86694 4.91356 4.93021 4.98390 4.99334 5.06477 5.09049 5.13269 5.19168 5.29020 5.34472 5.36537 5.42952 5.49819 5.53075 5.60286 5.64347 5.72189 6.05854 6.51800 6.52140 6.86070 7.23730 7.57308 7.80654 8.38222 8.62427 9.54467 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.003596 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.039846 B = 7783.811207 C =10017.367524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.730 5.730 3 C 0.510 3.490 4 O -0.585 6.585 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.093 4.093 8 C -0.126 4.126 9 C 0.477 3.523 10 O -0.507 6.507 11 N -0.616 5.616 12 C 0.108 3.892 13 C -0.133 4.133 14 C -0.110 4.110 15 C -0.127 4.127 16 C 0.149 3.851 17 H 0.089 0.911 18 C 0.167 3.833 19 H 0.060 0.940 20 C -0.161 4.161 21 N -0.702 5.702 22 C -0.150 4.150 23 H 0.052 0.948 24 C -0.095 4.095 25 N -0.983 5.983 26 Si 0.952 3.048 27 H -0.288 1.288 28 H -0.302 1.302 29 H -0.287 1.287 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.418 0.582 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.028 0.972 52 H 0.069 0.931 53 H 0.367 0.633 54 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 6.702 -12.030 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.382 5.382 3 C 0.297 3.703 4 O -0.465 6.465 5 C -0.180 4.180 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.166 4.166 9 C 0.265 3.735 10 O -0.380 6.380 11 N -0.352 5.352 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.147 4.147 15 C -0.166 4.166 16 C 0.045 3.955 17 H 0.106 0.894 18 C 0.058 3.942 19 H 0.077 0.923 20 C -0.221 4.221 21 N -0.342 5.342 22 C -0.284 4.284 23 H 0.070 0.930 24 C -0.284 4.284 25 N -0.639 5.639 26 Si 0.785 3.215 27 H -0.216 1.216 28 H -0.229 1.229 29 H -0.214 1.214 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.254 0.746 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.061 0.939 51 H 0.047 0.953 52 H 0.087 0.913 53 H 0.201 0.799 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.492 6.650 -12.107 18.625 hybrid contribution 0.259 -1.525 1.188 1.951 sum -12.233 5.124 -10.919 17.180 Atomic orbital electron populations 1.21659 0.78998 1.04116 1.01343 1.45855 1.08470 1.08880 1.74970 1.21104 0.91044 0.83549 0.74561 1.90667 1.71489 1.32938 1.51430 1.21699 0.90245 1.00096 1.05926 1.21203 0.93536 0.95293 1.02786 1.21179 0.94531 0.95552 1.01825 1.21628 0.91281 0.99179 1.04524 1.21196 0.90915 0.83943 0.77449 1.90960 1.68719 1.32300 1.46046 1.48055 1.06255 1.06381 1.74474 1.21881 0.96745 0.83578 0.99235 1.21910 0.96391 1.01006 0.97842 1.21475 0.95097 0.95274 1.02879 1.21895 1.00294 0.96476 0.97917 1.21478 0.79834 0.96009 0.98173 0.89350 1.20765 0.92014 0.92012 0.89392 0.92277 1.22440 0.99062 1.00108 1.00483 1.42472 1.84134 1.03042 1.04553 1.19166 1.32702 0.84880 0.91635 0.92996 1.25116 1.07174 1.00031 0.96073 1.69783 1.61788 1.33719 0.98635 0.85468 0.77579 0.83068 0.75425 1.21565 1.22919 1.21404 0.87253 0.93468 0.93027 0.74573 0.86754 0.88314 0.92548 0.90831 0.91857 0.94405 0.89487 0.86968 0.89314 0.89005 0.88227 0.94373 0.89802 0.91578 0.94758 0.90861 0.93926 0.95262 0.91263 0.79941 0.95334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.50 16 2 N -0.73 -11.88 5.71 -484.54 -2.77 -14.64 16 3 C 0.51 11.99 7.83 87.65 0.69 12.68 16 4 O -0.58 -18.51 15.98 -3.04 -0.05 -18.56 16 5 C -0.14 -3.01 5.70 29.85 0.17 -2.84 16 6 C -0.09 -2.27 4.50 30.59 0.14 -2.13 16 7 C -0.09 -2.80 4.50 30.59 0.14 -2.67 16 8 C -0.13 -3.58 4.10 29.85 0.12 -3.46 16 9 C 0.48 17.52 7.38 87.66 0.65 18.17 16 10 O -0.51 -23.64 8.72 -3.01 -0.03 -23.67 16 11 N -0.62 -19.03 2.97 -795.02 -2.36 -21.39 16 12 C 0.11 2.30 6.33 86.37 0.55 2.85 16 13 C -0.13 -2.89 6.08 30.68 0.19 -2.70 16 14 C -0.11 -2.45 5.88 30.63 0.18 -2.27 16 15 C -0.13 -3.93 4.87 30.67 0.15 -3.78 16 16 C 0.15 4.80 2.72 44.97 0.12 4.92 16 17 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 18 C 0.17 6.92 1.88 44.99 0.08 7.00 16 19 H 0.06 2.75 5.92 -6.13 -0.04 2.71 16 20 C -0.16 -5.96 9.15 71.98 0.66 -5.30 16 21 N -0.70 -36.54 3.61 -322.94 -1.17 -37.71 16 22 C -0.15 -8.87 7.98 84.04 0.67 -8.20 16 23 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 24 C -0.09 -5.81 5.50 84.86 0.47 -5.34 16 25 N -0.98 -63.57 13.06 21.65 0.28 -63.29 16 26 Si 0.95 49.99 29.55 68.60 2.03 52.02 16 27 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 29 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.42 4.24 8.83 -92.71 -0.82 3.42 16 34 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.54 8.10 -2.38 -0.02 1.53 16 37 H 0.07 1.74 8.10 -2.38 -0.02 1.73 16 38 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 39 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.09 2.39 7.49 -2.38 -0.02 2.37 16 41 H 0.11 2.42 8.11 -2.38 -0.02 2.40 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.74 5.96 -2.39 -0.01 1.73 16 44 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.03 1.38 6.04 -2.39 -0.01 1.37 16 49 H 0.07 2.15 7.04 -2.38 -0.02 2.13 16 50 H 0.04 1.58 7.03 -2.39 -0.02 1.56 16 51 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 53 H 0.37 20.67 5.62 -92.71 -0.52 20.15 16 54 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -82.30 412.44 1.80 -80.50 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.48 Total: 37.31 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.33 Total: 9.43 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -6.01 Total: -137.04 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.07 Total: -42.22 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.03 Total: 52.02 kcal Total: -82.30 1.80 -80.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689911550.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.097 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds