Wall clock time and date at job start Sat Apr 11 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 119.99805 * 2 1 4 4 O 1.21277 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99779 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47217 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47260 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47260 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47217 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00324 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99989 * 179.97438 * 9 8 7 12 12 C 1.46919 * 120.62900 * 354.28987 * 11 9 8 13 13 C 1.53196 * 108.77557 * 233.62535 * 12 11 9 14 14 C 1.53038 * 109.31403 * 305.36831 * 13 12 11 15 15 C 1.53039 * 109.53827 * 61.35774 * 14 13 12 16 16 C 1.46926 * 120.63153 * 174.30679 * 11 9 8 17 17 H 1.09006 * 109.58627 * 246.30418 * 16 11 9 18 18 C 1.53000 * 109.58708 * 6.58424 * 16 11 9 19 19 H 1.09007 * 109.47148 * 51.18293 * 18 16 11 20 20 C 1.52991 * 109.47479 * 171.18386 * 18 16 11 21 21 N 1.46505 * 109.47253 * 291.18626 * 18 16 11 22 22 C 1.36937 * 119.99901 * 166.06848 * 21 18 16 23 23 H 1.07994 * 120.00770 * 0.02562 * 22 21 18 24 24 C 1.38818 * 119.99677 * 179.97438 * 22 21 18 25 25 N 1.31622 * 120.00136 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47194 * 90.00297 * 26 24 22 28 28 H 1.48501 * 109.47083 * 210.00561 * 26 24 22 29 29 H 1.48500 * 109.46924 * 330.00163 * 26 24 22 30 30 H 1.09002 * 109.46748 * 60.00072 * 1 2 3 31 31 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47255 * 300.00157 * 1 2 3 33 33 H 0.97003 * 119.99939 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47081 * 60.00014 * 5 3 2 35 35 H 1.09005 * 109.47579 * 299.99721 * 5 3 2 36 36 H 1.09001 * 109.46955 * 60.00094 * 6 5 3 37 37 H 1.08998 * 109.47104 * 300.00437 * 6 5 3 38 38 H 1.09001 * 109.47044 * 60.00167 * 7 6 5 39 39 H 1.09005 * 109.47572 * 299.99900 * 7 6 5 40 40 H 1.09001 * 109.46955 * 60.00112 * 8 7 6 41 41 H 1.08998 * 109.47104 * 300.00455 * 8 7 6 42 42 H 1.08998 * 109.58761 * 353.41084 * 12 11 9 43 43 H 1.08999 * 109.58904 * 113.70049 * 12 11 9 44 44 H 1.09001 * 109.49209 * 65.31466 * 13 12 11 45 45 H 1.08998 * 109.50263 * 185.41004 * 13 12 11 46 46 H 1.09000 * 109.46088 * 181.38356 * 14 13 12 47 47 H 1.09001 * 109.45712 * 301.34075 * 14 13 12 48 48 H 1.09003 * 109.50059 * 178.68426 * 15 14 13 49 49 H 1.09005 * 109.49639 * 58.59372 * 15 14 13 50 50 H 1.08996 * 109.47690 * 183.24591 * 20 18 16 51 51 H 1.09000 * 109.47216 * 303.24671 * 20 18 16 52 52 H 1.08998 * 109.47347 * 63.24394 * 20 18 16 53 53 H 0.97003 * 119.99764 * 346.07037 * 21 18 16 54 54 H 0.96996 * 120.00246 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6097 -0.0002 7 6 5.6859 2.6097 0.0011 8 6 6.1959 4.0522 0.0009 9 6 7.7028 4.0522 0.0015 10 8 8.3093 3.0020 0.0024 11 7 8.3768 5.2195 0.0010 12 6 7.6617 6.4966 -0.1259 13 6 8.2705 7.2894 -1.2869 14 6 9.7782 7.4323 -1.0665 15 6 10.4248 6.0456 -1.0368 16 6 9.8405 5.2389 0.1270 17 1 10.1197 5.7031 1.0728 18 6 10.3784 3.8073 0.0798 19 1 9.9733 3.2955 -0.7933 20 6 11.9053 3.8389 -0.0104 21 7 9.9756 3.0940 1.2944 22 6 10.0890 1.7308 1.3573 23 1 10.4757 1.1814 0.5117 24 6 9.7078 1.0550 2.5084 25 7 9.2369 1.7245 3.5392 26 14 9.8631 -0.8045 2.5945 27 1 11.2024 -1.1654 3.1247 28 1 8.8124 -1.3480 3.4922 29 1 9.6978 -1.3785 1.2349 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.9501 -0.8401 0.0004 34 1 4.0095 0.6532 -0.8892 35 1 4.0090 0.6536 0.8909 36 1 3.7922 3.1241 0.8893 37 1 3.7929 3.1230 -0.8906 38 1 6.0499 2.0952 -0.8882 39 1 6.0486 2.0966 0.8918 40 1 5.8319 4.5664 0.8904 41 1 5.8332 4.5657 -0.8895 42 1 6.6073 6.3067 -0.3265 43 1 7.7612 7.0647 0.7990 44 1 8.0881 6.7615 -2.2229 45 1 7.8139 8.2781 -1.3313 46 1 10.2100 8.0171 -1.8787 47 1 9.9602 7.9383 -0.1184 48 1 11.5017 6.1491 -0.9032 49 1 10.2222 5.5295 -1.9753 50 1 12.2851 2.8213 -0.1020 51 1 12.2058 4.4187 -0.8830 52 1 12.3130 4.2991 0.8896 53 1 9.6285 3.5874 2.0541 54 1 8.9702 1.2523 4.3434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689911552.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:27 Heat of formation + Delta-G solvation = -66.741958 kcal Electronic energy + Delta-G solvation = -31412.920003 eV Core-core repulsion = 27384.782257 eV Total energy + Delta-G solvation = -4028.137745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39970 -40.69975 -38.29032 -37.01462 -35.97245 -35.52876 -34.16763 -33.56256 -31.76729 -31.41512 -29.36883 -28.29904 -26.55970 -25.88904 -25.04270 -24.04085 -22.46601 -21.42061 -21.39651 -21.28965 -19.95483 -18.69608 -18.10483 -17.45194 -17.13101 -16.86307 -16.71139 -16.64343 -16.27344 -15.59211 -15.44356 -15.33427 -14.90216 -14.81510 -14.64669 -14.59441 -14.21013 -14.11279 -13.74671 -13.56502 -13.45794 -13.32420 -13.16903 -13.07381 -12.93919 -12.77485 -12.58875 -12.38466 -12.30781 -12.19733 -12.10551 -12.03794 -11.83578 -11.66346 -11.56888 -11.48950 -11.30559 -11.12594 -10.94859 -10.73417 -10.14558 -9.59506 -9.28991 -8.48583 -7.72287 -4.89859 1.45503 1.47072 1.55205 1.60795 2.17502 2.26436 2.39200 2.69098 3.61145 3.68961 3.81910 3.88385 3.94377 3.99766 4.04276 4.13774 4.19173 4.36411 4.39091 4.40547 4.43201 4.43856 4.53999 4.59686 4.64288 4.69001 4.74730 4.81409 4.83739 4.88286 4.90936 4.92700 4.95021 4.97554 5.08254 5.10691 5.13498 5.20782 5.23023 5.30571 5.36489 5.42965 5.46268 5.51420 5.53980 5.62988 5.68020 6.03581 6.48544 6.51831 6.84981 7.23374 7.54349 7.80138 8.33020 8.56778 9.52943 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008106 B = 0.003756 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.436374 B = 7453.601100 C =10435.886695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.730 5.730 3 C 0.510 3.490 4 O -0.584 6.584 5 C -0.140 4.140 6 C -0.089 4.089 7 C -0.092 4.092 8 C -0.125 4.125 9 C 0.467 3.533 10 O -0.496 6.496 11 N -0.619 5.619 12 C 0.104 3.896 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.120 4.120 16 C 0.150 3.850 17 H 0.050 0.950 18 C 0.180 3.820 19 H 0.041 0.959 20 C -0.161 4.161 21 N -0.697 5.697 22 C -0.163 4.163 23 H 0.053 0.947 24 C -0.089 4.089 25 N -0.979 5.979 26 Si 0.953 3.047 27 H -0.296 1.296 28 H -0.300 1.300 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.418 0.582 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.029 0.971 51 H 0.075 0.925 52 H 0.040 0.960 53 H 0.362 0.638 54 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 7.860 -12.709 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.382 5.382 3 C 0.298 3.702 4 O -0.465 6.465 5 C -0.180 4.180 6 C -0.127 4.127 7 C -0.130 4.130 8 C -0.164 4.164 9 C 0.254 3.746 10 O -0.368 6.368 11 N -0.356 5.356 12 C -0.019 4.019 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.159 4.159 16 C 0.046 3.954 17 H 0.068 0.932 18 C 0.072 3.928 19 H 0.058 0.942 20 C -0.221 4.221 21 N -0.335 5.335 22 C -0.296 4.296 23 H 0.071 0.929 24 C -0.278 4.278 25 N -0.634 5.634 26 Si 0.786 3.214 27 H -0.224 1.224 28 H -0.227 1.227 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.094 0.906 52 H 0.059 0.941 53 H 0.193 0.807 54 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.283 7.799 -12.805 18.765 hybrid contribution 0.211 -1.566 1.015 1.878 sum -11.072 6.234 -11.791 17.334 Atomic orbital electron populations 1.21664 0.78959 1.04126 1.01357 1.45859 1.08490 1.08865 1.74967 1.21082 0.90996 0.83563 0.74560 1.90662 1.71466 1.32924 1.51432 1.21696 0.90307 1.00101 1.05862 1.21195 0.93489 0.95284 1.02761 1.21162 0.94545 0.95594 1.01678 1.21601 0.91382 0.99053 1.04404 1.21203 0.90938 0.84032 0.78427 1.91089 1.68579 1.32270 1.44890 1.48035 1.06240 1.06426 1.74909 1.21882 0.97099 0.83699 0.99172 1.21889 0.95938 1.00955 0.97726 1.21512 0.95480 0.95541 1.02710 1.21946 1.00616 0.96253 0.97038 1.21329 0.80161 0.95790 0.98141 0.93165 1.20529 0.91432 0.90166 0.90689 0.94153 1.22459 0.98548 1.00289 1.00769 1.42344 1.75140 1.03106 1.12903 1.19165 1.29073 0.84913 0.96464 0.92946 1.25131 1.05175 1.00396 0.97131 1.69797 1.54054 1.34506 1.05072 0.85377 0.76421 0.82971 0.76647 1.22394 1.22682 1.20565 0.93000 0.87245 0.93453 0.74582 0.86857 0.88367 0.92506 0.90852 0.92168 0.94456 0.89468 0.87182 0.88586 0.91740 0.91901 0.88498 0.89949 0.91702 0.89912 0.92149 0.95183 0.90626 0.94128 0.80729 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.70 127.77 1.37 2.54 16 2 N -0.73 -12.34 5.71 -484.52 -2.77 -15.11 16 3 C 0.51 12.37 7.83 87.66 0.69 13.05 16 4 O -0.58 -18.82 15.98 -3.02 -0.05 -18.87 16 5 C -0.14 -3.15 5.70 29.85 0.17 -2.98 16 6 C -0.09 -2.33 4.50 30.59 0.14 -2.19 16 7 C -0.09 -2.89 4.50 30.59 0.14 -2.75 16 8 C -0.12 -3.65 4.11 29.85 0.12 -3.53 16 9 C 0.47 17.49 7.38 87.65 0.65 18.14 16 10 O -0.50 -23.76 8.92 -3.02 -0.03 -23.79 16 11 N -0.62 -19.39 2.97 -795.04 -2.36 -21.75 16 12 C 0.10 2.21 6.32 86.37 0.55 2.76 16 13 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 14 C -0.11 -2.03 5.88 30.62 0.18 -1.85 16 15 C -0.12 -2.88 4.57 30.67 0.14 -2.74 16 16 C 0.15 4.96 2.57 44.97 0.12 5.08 16 17 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 18 C 0.18 7.59 1.79 44.99 0.08 7.67 16 19 H 0.04 1.91 6.36 -2.38 -0.02 1.90 16 20 C -0.16 -6.04 8.86 71.98 0.64 -5.40 16 21 N -0.70 -36.97 3.15 -322.94 -1.02 -37.99 16 22 C -0.16 -9.65 8.30 84.04 0.70 -8.96 16 23 H 0.05 3.15 7.83 -2.91 -0.02 3.12 16 24 C -0.09 -5.42 5.50 84.86 0.47 -4.95 16 25 N -0.98 -63.13 13.06 21.65 0.28 -62.84 16 26 Si 0.95 49.73 29.55 68.60 2.03 51.76 16 27 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 28 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 29 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 4.54 8.83 -92.71 -0.82 3.72 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 39 H 0.04 1.49 8.10 -2.38 -0.02 1.47 16 40 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 41 H 0.11 2.47 7.45 -2.39 -0.02 2.45 16 42 H 0.10 1.73 5.96 -2.39 -0.01 1.72 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 1.84 6.62 -2.39 -0.02 1.82 16 49 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 51 H 0.08 2.23 6.26 -2.39 -0.01 2.22 16 52 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 53 H 0.36 20.97 7.71 -92.71 -0.71 20.25 16 54 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.08 415.05 1.76 -80.32 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.65 Total: 36.29 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.32 Total: 11.98 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -5.86 Total: -137.69 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.08 Total: -42.66 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -82.08 1.76 -80.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689911552.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.580 kcal (2) G-P(sol) polarization free energy of solvation -82.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds