Wall clock time and date at job start Sat Apr 11 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47147 * 2 1 4 4 C 1.52996 * 109.47313 * 239.99631 * 2 1 3 5 5 N 1.46904 * 109.46864 * 65.00164 * 4 2 1 6 6 C 1.47018 * 110.99466 * 46.31858 * 5 4 2 7 7 C 1.53103 * 109.25198 * 182.35077 * 6 5 4 8 8 O 1.43015 * 109.29279 * 303.21672 * 7 6 5 9 9 C 1.43019 * 113.73703 * 58.65179 * 8 7 6 10 10 C 1.47017 * 110.99992 * 169.99878 * 5 4 2 11 11 C 1.50703 * 109.47019 * 119.99965 * 2 1 3 12 12 O 1.21274 * 120.00090 * 120.00184 * 11 2 1 13 13 N 1.34779 * 119.99902 * 299.99995 * 11 2 1 14 14 C 1.46505 * 119.99900 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.46987 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47007 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99644 * 270.00175 * 17 16 15 19 19 H 1.08000 * 119.99932 * 141.42438 * 18 17 16 20 20 C 1.38809 * 120.00398 * 321.42298 * 18 17 16 21 21 N 1.31620 * 120.00367 * 157.77649 * 20 18 17 22 22 Si 1.86804 * 119.99609 * 337.77611 * 20 18 17 23 23 H 1.48495 * 109.47424 * 95.68323 * 22 20 18 24 24 H 1.48508 * 109.46947 * 215.68071 * 22 20 18 25 25 H 1.48496 * 109.47132 * 335.67696 * 22 20 18 26 26 C 1.46498 * 120.00058 * 90.00137 * 17 16 15 27 27 C 1.52998 * 117.49798 * 183.19063 * 26 17 16 28 28 C 1.52998 * 117.49790 * 114.52971 * 26 17 16 29 29 H 1.09000 * 109.47408 * 299.99731 * 1 2 3 30 30 H 1.09001 * 109.46956 * 60.00267 * 1 2 3 31 31 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47523 * 305.00340 * 4 2 1 33 33 H 1.08998 * 109.47210 * 184.99482 * 4 2 1 34 34 H 1.08998 * 109.47453 * 62.44411 * 6 5 4 35 35 H 1.08998 * 109.54722 * 302.29917 * 6 5 4 36 36 H 1.08999 * 109.50477 * 183.25989 * 7 6 5 37 37 H 1.09003 * 109.50728 * 63.17263 * 7 6 5 38 38 H 1.09001 * 109.50583 * 61.26519 * 9 8 7 39 39 H 1.08999 * 109.50297 * 181.34931 * 9 8 7 40 40 H 1.08998 * 109.50487 * 57.67087 * 10 5 4 41 41 H 1.09000 * 109.54191 * 297.56039 * 10 5 4 42 42 H 0.96998 * 119.99927 * 0.02562 * 13 11 2 43 43 H 1.09003 * 109.47119 * 300.00016 * 14 13 11 44 44 H 1.08992 * 109.47210 * 60.00284 * 14 13 11 45 45 H 1.08990 * 109.47113 * 300.00647 * 15 14 13 46 46 H 1.09002 * 109.46920 * 60.00034 * 15 14 13 47 47 H 1.08993 * 109.47202 * 300.00195 * 16 15 14 48 48 H 1.09001 * 109.46648 * 60.00011 * 16 15 14 49 49 H 0.96996 * 120.00174 * 179.97438 * 21 20 18 50 50 H 1.09003 * 115.54890 * 328.86137 * 26 17 16 51 51 H 1.09001 * 117.49648 * 359.97438 * 27 26 17 52 52 H 1.08996 * 117.49715 * 145.02081 * 27 26 17 53 53 H 1.08993 * 117.50354 * 214.97775 * 28 26 17 54 54 H 1.09000 * 117.49776 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6514 0.0374 -2.4456 6 6 1.9365 1.4697 -2.2766 7 6 1.4635 2.2286 -3.5194 8 8 2.1001 1.6819 -4.6776 9 6 1.8423 0.2887 -4.8725 10 6 2.3201 -0.4899 -3.6440 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1955 -0.9402 3.6508 15 6 1.6859 -0.2186 4.9001 16 6 2.1958 -0.9399 6.1493 17 7 1.7073 -0.2493 7.3455 18 6 2.4474 0.7582 7.9045 19 1 1.9546 1.6317 8.3053 20 6 3.8308 0.6568 7.9562 21 7 4.5665 1.7422 8.0708 22 14 4.6484 -1.0202 7.8632 23 1 5.0493 -1.2984 6.4607 24 1 5.8516 -1.0333 8.7337 25 1 3.6947 -2.0620 8.3214 26 6 0.4273 -0.6366 7.9435 27 6 -0.0637 0.1714 9.1464 28 6 0.4593 -1.2537 9.3431 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 3.0092 1.6141 -2.1484 35 1 1.4104 1.8452 -1.3989 36 1 1.7249 3.2824 -3.4238 37 1 0.3825 2.1291 -3.6172 38 1 0.7723 0.1322 -5.0093 39 1 2.3770 -0.0602 -5.7560 40 1 2.0741 -1.5451 -3.7635 41 1 3.3991 -0.3774 -3.5388 42 1 1.1488 0.5385 2.5436 43 1 1.8326 -1.9681 3.6510 44 1 3.2854 -0.9398 3.6507 45 1 2.0491 0.8090 4.8996 46 1 0.5959 -0.2187 4.9004 47 1 1.8322 -1.9674 6.1495 48 1 3.2858 -0.9402 6.1491 49 1 5.5331 1.6713 8.1073 50 1 -0.3238 -1.0084 7.2465 51 1 0.5660 0.9908 9.4931 52 1 -1.1378 0.3308 9.2410 53 1 -0.2708 -2.0312 9.5672 54 1 1.4329 -1.3720 9.8188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690014692.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:33 Heat of formation + Delta-G solvation = -51.245414 kcal Electronic energy + Delta-G solvation = -29929.244763 eV Core-core repulsion = 25901.778998 eV Total energy + Delta-G solvation = -4027.465764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30751 -40.32255 -39.07263 -37.44262 -36.69106 -35.29995 -34.24869 -33.55716 -32.09657 -31.33370 -28.99949 -27.21716 -26.17511 -25.47976 -25.06498 -23.58006 -23.03835 -22.61884 -21.54787 -21.38394 -20.54211 -18.56329 -18.39810 -17.43987 -17.37358 -17.05201 -17.04826 -16.76136 -16.74282 -16.15867 -16.06069 -15.79111 -15.53604 -15.32269 -15.06742 -14.66926 -14.40651 -14.33980 -14.10618 -13.92024 -13.77679 -13.55884 -13.18258 -13.11186 -12.76902 -12.67161 -12.62149 -12.51841 -12.43764 -12.35298 -12.21466 -12.06273 -11.80420 -11.75284 -11.50633 -11.45784 -11.27589 -10.97496 -10.81653 -10.65737 -10.62827 -10.13428 -9.46943 -8.63385 -8.23384 -5.60717 1.25661 1.37100 1.46892 1.57598 2.06156 2.37208 2.75433 2.96965 2.99490 3.19015 3.35853 3.56481 3.74146 3.88613 3.94794 4.02465 4.05631 4.14789 4.19073 4.26511 4.28581 4.30582 4.32912 4.36946 4.41628 4.50001 4.56166 4.59233 4.65269 4.71857 4.72722 4.75595 4.81250 4.84080 4.89633 4.95955 4.96741 5.00430 5.04140 5.07223 5.22763 5.31346 5.35485 5.37343 5.44502 5.55259 5.82970 5.88885 5.93819 6.18995 6.20102 6.51824 6.98740 7.19647 7.62482 8.03168 8.95635 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.001992 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.806809 B =14051.258261 C =14439.450038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.116 0.884 4 C 0.081 3.919 5 N -0.529 5.529 6 C 0.004 3.996 7 C 0.063 3.937 8 O -0.409 6.409 9 C 0.066 3.934 10 C 0.015 3.985 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.713 5.713 14 C 0.127 3.873 15 C -0.125 4.125 16 C 0.136 3.864 17 N -0.586 5.586 18 C -0.245 4.245 19 H 0.050 0.950 20 C -0.014 4.014 21 N -0.944 5.944 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.313 1.313 25 H -0.259 1.259 26 C 0.107 3.893 27 C -0.185 4.185 28 C -0.219 4.219 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.030 0.970 42 H 0.415 0.585 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.029 0.971 49 H 0.261 0.739 50 H 0.130 0.870 51 H 0.067 0.933 52 H 0.114 0.886 53 H 0.110 0.890 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 -2.962 -23.365 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 H 0.133 0.867 4 C -0.047 4.047 5 N -0.254 5.254 6 C -0.124 4.124 7 C -0.014 4.014 8 O -0.328 6.328 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.299 3.701 12 O -0.470 6.470 13 N -0.365 5.365 14 C 0.002 3.998 15 C -0.165 4.165 16 C 0.011 3.989 17 N -0.306 5.306 18 C -0.374 4.374 19 H 0.068 0.932 20 C -0.211 4.211 21 N -0.588 5.588 22 Si 0.759 3.241 23 H -0.205 1.205 24 H -0.242 1.242 25 H -0.183 1.183 26 C -0.001 4.001 27 C -0.223 4.223 28 C -0.259 4.259 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.049 0.951 42 H 0.252 0.748 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.148 0.852 51 H 0.086 0.914 52 H 0.132 0.868 53 H 0.128 0.872 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.572 -3.538 -23.613 26.984 hybrid contribution 2.003 -0.286 1.026 2.269 sum -10.569 -3.824 -22.587 25.229 Atomic orbital electron populations 1.21698 0.89945 1.02989 1.04062 1.21433 1.00049 1.00839 0.90395 0.86659 1.21777 0.97493 0.97419 0.87984 1.62344 1.57678 1.02856 1.02547 1.23049 0.99636 0.88740 1.00947 1.22808 0.97654 0.97912 0.83014 1.87966 1.73976 1.24655 1.46205 1.22762 1.01488 0.80101 0.96763 1.22853 0.96424 1.01005 0.91038 1.21164 0.79192 0.84096 0.85622 1.90683 1.40073 1.28685 1.87533 1.45955 1.53218 1.32330 1.04982 1.21195 0.98012 0.96639 0.83950 1.22083 1.01983 0.99812 0.92602 1.21126 0.96810 0.95278 0.85683 1.43769 1.20517 1.39605 1.26662 1.18561 0.88125 0.95780 1.34977 0.93190 1.26008 0.97438 0.98753 0.98918 1.69963 1.05429 1.29126 1.54306 0.86074 0.77510 0.83739 0.76820 1.20492 1.24216 1.18264 1.21550 0.89139 1.01246 0.88120 1.23050 1.00625 0.94527 1.04122 1.23374 1.01335 0.96321 1.04902 0.90846 0.89340 0.92772 0.90407 0.96021 0.95235 0.87302 0.87118 0.91224 0.91395 0.87059 0.88581 0.95136 0.74778 0.91195 0.94206 0.92790 0.89477 0.91308 0.95307 0.92953 0.85245 0.91416 0.86788 0.87157 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.78 71.98 0.63 -0.98 16 2 C -0.11 -1.82 2.21 -11.54 -0.03 -1.84 16 3 H 0.12 1.64 5.95 -2.39 -0.01 1.63 16 4 C 0.08 1.57 4.02 86.30 0.35 1.92 16 5 N -0.53 -8.27 4.34 -895.20 -3.88 -12.15 16 6 C 0.00 0.06 4.79 86.32 0.41 0.47 16 7 C 0.06 0.79 7.01 72.02 0.50 1.29 16 8 O -0.41 -6.97 10.83 -148.98 -1.61 -8.58 16 9 C 0.07 0.84 7.01 72.01 0.50 1.34 16 10 C 0.01 0.22 5.63 86.31 0.49 0.71 16 11 C 0.51 13.02 7.15 87.66 0.63 13.65 16 12 O -0.59 -20.35 15.92 -3.01 -0.05 -20.40 16 13 N -0.71 -16.79 5.45 -463.05 -2.52 -19.31 16 14 C 0.13 3.70 5.68 86.38 0.49 4.19 16 15 C -0.12 -3.92 5.65 30.60 0.17 -3.74 16 16 C 0.14 5.27 4.55 86.38 0.39 5.67 16 17 N -0.59 -25.54 2.39 -678.05 -1.62 -27.16 16 18 C -0.24 -13.14 8.95 84.03 0.75 -12.39 16 19 H 0.05 2.98 6.86 -2.91 -0.02 2.96 16 20 C -0.01 -0.82 5.30 84.86 0.45 -0.37 16 21 N -0.94 -58.03 13.97 21.65 0.30 -57.73 16 22 Si 0.93 46.15 25.08 68.60 1.72 47.87 16 23 H -0.28 -13.33 6.69 99.48 0.67 -12.67 16 24 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 25 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.11 3.81 6.56 44.99 0.30 4.10 16 27 C -0.19 -6.46 9.80 30.62 0.30 -6.16 16 28 C -0.22 -7.61 10.36 30.62 0.32 -7.29 16 29 H 0.07 0.72 7.56 -2.39 -0.02 0.70 16 30 H 0.09 0.93 7.31 -2.39 -0.02 0.91 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.02 0.52 7.89 -2.39 -0.02 0.50 16 34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.11 1.14 5.49 -2.39 -0.01 1.13 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.42 7.34 7.89 -92.71 -0.73 6.60 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 46 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 48 H 0.03 1.29 3.40 -2.39 -0.01 1.28 16 49 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 50 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 51 H 0.07 2.86 6.45 -2.39 -0.02 2.85 16 52 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 53 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 54 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.32 415.90 -0.90 -73.23 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.10 Total: 23.66 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.66 Total: 0.57 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -7.73 Total: -116.35 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.66 Total: -28.97 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.72 Total: 47.87 kcal Total: -72.32 -0.90 -73.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690014692.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.982 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds