Wall clock time and date at job start Sat Apr 11 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 5 5 N 1.46897 * 109.47207 * 295.00115 * 4 2 1 6 6 C 1.47014 * 111.00124 * 293.63354 * 5 4 2 7 7 C 1.53097 * 109.26012 * 177.60465 * 6 5 4 8 8 O 1.43024 * 109.25540 * 56.84883 * 7 6 5 9 9 C 1.43008 * 113.73956 * 301.32903 * 8 7 6 10 10 C 1.47014 * 111.00450 * 169.99806 * 5 4 2 11 11 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 12 12 O 1.21278 * 119.99985 * 240.00503 * 11 2 1 13 13 N 1.34779 * 119.99944 * 60.00215 * 11 2 1 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.64492 * 54.29609 * 16 15 14 18 18 C 1.55159 * 110.72218 * 177.44257 * 16 15 14 19 19 C 1.55114 * 101.48923 * 153.72960 * 18 16 15 20 20 N 1.47427 * 104.94518 * 323.22286 * 19 18 16 21 21 C 1.36933 * 125.64958 * 203.97163 * 20 19 18 22 22 H 1.08005 * 120.00079 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00171 * 0.03544 * 21 20 19 24 24 N 1.31617 * 119.99607 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00122 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47347 * 60.00079 * 25 23 21 27 27 H 1.48501 * 109.47075 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47436 * 299.99758 * 25 23 21 29 29 C 1.47026 * 108.70021 * 23.99733 * 20 19 18 30 30 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 31 31 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 32 32 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47272 * 55.00093 * 4 2 1 34 34 H 1.09000 * 109.47459 * 174.99780 * 4 2 1 35 35 H 1.08996 * 109.50397 * 297.54052 * 6 5 4 36 36 H 1.08999 * 109.50377 * 57.67328 * 6 5 4 37 37 H 1.08995 * 109.50687 * 296.91850 * 7 6 5 38 38 H 1.09000 * 109.50832 * 176.78398 * 7 6 5 39 39 H 1.08996 * 109.51095 * 298.73558 * 9 8 7 40 40 H 1.08999 * 109.50589 * 178.60732 * 9 8 7 41 41 H 1.09007 * 109.50613 * 302.33400 * 10 5 4 42 42 H 1.09004 * 109.50427 * 62.45495 * 10 5 4 43 43 H 0.97000 * 119.99708 * 359.97438 * 13 11 2 44 44 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 45 45 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 46 46 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 47 47 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 48 48 H 1.08999 * 110.99972 * 271.93626 * 18 16 15 49 49 H 1.08998 * 111.00410 * 35.77852 * 18 16 15 50 50 H 1.09000 * 110.42183 * 204.29025 * 19 18 16 51 51 H 1.09005 * 110.30277 * 82.08857 * 19 18 16 52 52 H 0.97000 * 120.00183 * 179.97438 * 24 23 21 53 53 H 1.08992 * 109.88552 * 239.52174 * 29 20 19 54 54 H 1.09002 * 110.00365 * 118.43481 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.3404 1.3353 2.4934 7 6 1.8626 2.1158 3.7207 8 8 2.0959 1.3353 4.8963 9 6 1.4391 0.0650 4.8837 10 6 1.9126 -0.7362 3.6681 11 6 2.0324 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1191 13 7 1.7069 -0.2500 -2.4546 14 6 2.1948 -0.9409 -3.6507 15 6 1.6854 -0.2192 -4.9000 16 6 2.1945 -0.9412 -6.1492 17 1 1.9257 -1.9971 -6.1191 18 6 1.6418 -0.2704 -7.4345 19 6 2.7354 -0.6400 -8.4706 20 7 4.0047 -0.5739 -7.7236 21 6 5.2426 -0.3648 -8.2705 22 1 6.1154 -0.3336 -7.6351 23 6 5.3757 -0.1927 -9.6415 24 7 4.3121 -0.2311 -10.4158 25 14 7.0644 0.0918 -10.3875 26 1 7.9411 -1.0680 -10.0847 27 1 6.9362 0.2438 -11.8591 28 1 7.6585 1.3250 -9.8119 29 6 3.7214 -0.7703 -6.2943 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 3.4162 1.1739 2.5608 36 1 2.1125 1.9017 1.5905 37 1 0.7967 2.3237 3.6276 38 1 2.4123 3.0543 3.7919 39 1 0.3609 0.2133 4.8244 40 1 1.6826 -0.4796 5.7959 41 1 1.3725 -1.6820 3.6227 42 1 2.9816 -0.9307 3.7542 43 1 1.1489 0.5385 -2.5436 44 1 1.8311 -1.9685 -3.6506 45 1 3.2848 -0.9413 -3.6508 46 1 0.5954 -0.2184 -4.9001 47 1 2.0495 0.8081 -4.8999 48 1 0.6769 -0.6944 -7.7125 49 1 1.5709 0.8103 -7.3116 50 1 2.7402 0.0777 -9.2910 51 1 2.5710 -1.6483 -8.8506 52 1 4.4050 -0.1105 -11.3738 53 1 4.0526 0.0999 -5.7278 54 1 4.2304 -1.6637 -5.9326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691923866.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:07 Heat of formation + Delta-G solvation = -86.701238 kcal Electronic energy + Delta-G solvation = -29588.471095 eV Core-core repulsion = 25559.467851 eV Total energy + Delta-G solvation = -4029.003244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22180 -40.33089 -39.41644 -37.30929 -36.43433 -34.84421 -34.07589 -32.36249 -32.10285 -30.67585 -28.97225 -28.10798 -26.66831 -26.05645 -25.02068 -24.12776 -23.01120 -21.91900 -21.50387 -21.07716 -20.39533 -18.89989 -18.41792 -17.26434 -17.16427 -17.00395 -16.92146 -16.71753 -16.47108 -16.06232 -15.91485 -15.76770 -15.48473 -15.21976 -14.97362 -14.35127 -14.27492 -14.20485 -13.81706 -13.63665 -13.50389 -13.34272 -13.18417 -13.06497 -13.03333 -12.82512 -12.67742 -12.59007 -12.31916 -12.27852 -12.17540 -12.04208 -11.80513 -11.77306 -11.54694 -11.45945 -11.43520 -11.25058 -10.78099 -10.72737 -10.64536 -10.09145 -9.47288 -8.88478 -7.78298 -5.22651 1.44230 1.47598 1.54136 1.62001 2.09069 2.48545 2.78109 2.98565 3.30235 3.62314 3.72992 3.75072 3.79783 3.91794 3.94349 3.99994 4.03942 4.17105 4.20436 4.26969 4.30742 4.33057 4.35247 4.39923 4.60774 4.63660 4.67079 4.71259 4.73779 4.74782 4.76590 4.82924 4.88738 4.91478 5.01383 5.02438 5.03112 5.09543 5.12429 5.19018 5.26406 5.40969 5.42771 5.45783 5.51170 5.69028 5.83313 5.84534 5.89924 6.19877 6.31892 6.56189 7.10904 7.25478 7.78986 8.42802 9.23012 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.001658 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.335320 B =16885.907960 C =17500.635159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 H 0.116 0.884 4 C 0.080 3.920 5 N -0.528 5.528 6 C 0.010 3.990 7 C 0.063 3.937 8 O -0.410 6.410 9 C 0.065 3.935 10 C 0.015 3.985 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.713 5.713 14 C 0.123 3.877 15 C -0.099 4.099 16 C -0.085 4.085 17 H 0.077 0.923 18 C -0.121 4.121 19 C 0.148 3.852 20 N -0.629 5.629 21 C -0.243 4.243 22 H 0.076 0.924 23 C -0.068 4.068 24 N -0.947 5.947 25 Si 0.981 3.019 26 H -0.281 1.281 27 H -0.290 1.290 28 H -0.276 1.276 29 C 0.134 3.866 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.030 0.970 43 H 0.417 0.583 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.099 0.901 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.072 0.928 51 H -0.018 1.018 52 H 0.247 0.753 53 H 0.025 0.975 54 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 5.049 29.276 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.134 0.866 4 C -0.049 4.049 5 N -0.253 5.253 6 C -0.118 4.118 7 C -0.013 4.013 8 O -0.329 6.329 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.365 5.365 14 C -0.001 4.001 15 C -0.137 4.137 16 C -0.104 4.104 17 H 0.095 0.905 18 C -0.159 4.159 19 C 0.023 3.977 20 N -0.355 5.355 21 C -0.372 4.372 22 H 0.093 0.907 23 C -0.260 4.260 24 N -0.597 5.597 25 Si 0.808 3.192 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.202 1.202 29 C 0.009 3.991 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.000 1.000 52 H 0.057 0.943 53 H 0.043 0.957 54 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -13.827 4.536 29.288 32.703 hybrid contribution 1.978 -0.366 -1.198 2.341 sum -11.849 4.170 28.090 30.770 Atomic orbital electron populations 1.21650 0.90178 1.02566 1.04061 1.21247 0.99772 1.00793 0.90016 0.86623 1.21754 0.97486 0.96988 0.88643 1.62238 1.57345 1.04023 1.01720 1.22957 0.96200 0.91590 1.01080 1.22793 1.01751 0.93967 0.82810 1.87968 1.73630 1.30301 1.40954 1.22763 0.97263 0.83496 0.97617 1.22846 0.99648 0.98333 0.90462 1.21191 0.79137 0.84056 0.85802 1.90704 1.40118 1.28783 1.87578 1.45901 1.53340 1.32365 1.04874 1.21268 0.98460 0.96376 0.83999 1.21623 1.02308 0.99227 0.90509 1.22017 0.93354 1.00058 0.94996 0.90464 1.22909 0.98087 1.00348 0.94592 1.21807 0.83655 0.97343 0.94849 1.44850 1.03647 1.84339 1.02639 1.19411 0.85266 1.41161 0.91385 0.90654 1.25642 1.01256 1.02701 0.96426 1.70054 1.28295 1.57748 1.03612 0.85125 0.78941 0.78166 0.76930 1.20763 1.21609 1.20159 1.21558 0.95495 0.96802 0.85228 0.89529 0.90722 0.93268 0.90767 0.96059 0.95329 0.87797 0.91189 0.87190 0.91352 0.87159 0.88526 0.95201 0.74527 0.92187 0.93664 0.88225 0.90670 0.89487 0.91273 0.91034 1.00018 0.94295 0.95672 0.97370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.98 71.98 0.65 -0.60 16 2 C -0.10 -1.36 2.65 -11.54 -0.03 -1.39 16 3 H 0.12 1.21 6.30 -2.39 -0.02 1.19 16 4 C 0.08 1.36 3.69 86.30 0.32 1.68 16 5 N -0.53 -7.13 4.18 -895.22 -3.74 -10.87 16 6 C 0.01 0.12 5.44 86.31 0.47 0.59 16 7 C 0.06 0.69 7.01 72.01 0.50 1.19 16 8 O -0.41 -6.34 10.83 -148.98 -1.61 -7.95 16 9 C 0.07 0.73 7.01 72.01 0.50 1.24 16 10 C 0.02 0.20 5.64 86.31 0.49 0.69 16 11 C 0.51 11.14 7.15 87.66 0.63 11.77 16 12 O -0.59 -18.93 15.92 -3.02 -0.05 -18.97 16 13 N -0.71 -12.88 5.45 -463.05 -2.52 -15.41 16 14 C 0.12 2.89 5.54 86.38 0.48 3.37 16 15 C -0.10 -2.15 4.72 30.59 0.14 -2.00 16 16 C -0.08 -2.67 2.95 -9.60 -0.03 -2.70 16 17 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 18 C -0.12 -4.22 6.55 32.06 0.21 -4.01 16 19 C 0.15 7.39 5.89 86.93 0.51 7.90 16 20 N -0.63 -33.42 3.40 -691.55 -2.35 -35.77 16 21 C -0.24 -14.13 10.27 84.03 0.86 -13.27 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 23 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 24 N -0.95 -57.31 10.09 21.65 0.22 -57.09 16 25 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 29 C 0.13 5.65 6.11 86.73 0.53 6.18 16 30 H 0.09 0.75 7.75 -2.39 -0.02 0.73 16 31 H 0.07 0.48 7.56 -2.38 -0.02 0.46 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 34 H 0.02 0.47 7.93 -2.39 -0.02 0.45 16 35 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 0.91 6.29 -2.39 -0.02 0.89 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.06 8.09 -2.38 -0.02 1.04 16 42 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.42 4.55 7.89 -92.71 -0.73 3.82 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.32 7.58 -2.39 -0.02 1.30 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.62 8.01 -2.39 -0.02 1.60 16 48 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 50 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 51 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 52 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 53 H 0.03 1.04 7.73 -2.39 -0.02 1.02 16 54 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -76.38 414.91 -1.20 -77.57 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.13 Total: 12.69 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.70 Total: 7.16 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -8.40 Total: -119.13 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.66 Total: -26.93 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -76.38 -1.20 -77.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691923866.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.128 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds