Wall clock time and date at job start Sat Apr 11 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47091 * 2 1 4 4 C 1.52997 * 109.47294 * 240.00108 * 2 1 3 5 5 N 1.46901 * 109.47228 * 65.00130 * 4 2 1 6 6 C 1.47015 * 111.00294 * 46.36146 * 5 4 2 7 7 C 1.53093 * 109.26056 * 182.39421 * 6 5 4 8 8 O 1.43015 * 109.25957 * 303.15203 * 7 6 5 9 9 C 1.43017 * 113.73701 * 58.67103 * 8 7 6 10 10 C 1.47015 * 111.00452 * 169.99842 * 5 4 2 11 11 C 1.50697 * 109.47271 * 119.99975 * 2 1 3 12 12 O 1.21285 * 120.00097 * 120.00411 * 11 2 1 13 13 N 1.34774 * 120.00161 * 300.00455 * 11 2 1 14 14 C 1.46504 * 120.00147 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.47055 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47167 * 179.97438 * 15 14 13 17 17 H 1.09004 * 110.63987 * 305.69915 * 16 15 14 18 18 C 1.55154 * 110.72285 * 182.55842 * 16 15 14 19 19 C 1.54907 * 101.58376 * 206.13593 * 18 16 15 20 20 N 1.47420 * 104.82922 * 37.00809 * 19 18 16 21 21 C 1.36944 * 125.64381 * 155.90677 * 20 19 18 22 22 H 1.07995 * 119.99510 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00254 * 359.97438 * 21 20 19 24 24 N 1.31625 * 120.00037 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00025 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47047 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46876 * 120.00341 * 25 23 21 28 28 H 1.48502 * 109.46976 * 239.99817 * 25 23 21 29 29 C 1.47313 * 108.73909 * 335.71626 * 20 19 18 30 30 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47319 * 299.99892 * 1 2 3 32 32 H 1.08999 * 109.47023 * 60.00055 * 1 2 3 33 33 H 1.08996 * 109.47501 * 305.00123 * 4 2 1 34 34 H 1.09008 * 109.47461 * 184.99530 * 4 2 1 35 35 H 1.09004 * 109.50485 * 62.46217 * 6 5 4 36 36 H 1.08999 * 109.50870 * 302.33706 * 6 5 4 37 37 H 1.09007 * 109.50521 * 183.21558 * 7 6 5 38 38 H 1.09004 * 109.50557 * 63.08975 * 7 6 5 39 39 H 1.09004 * 109.50547 * 61.26158 * 9 8 7 40 40 H 1.08993 * 109.50343 * 181.39128 * 9 8 7 41 41 H 1.09003 * 109.50470 * 57.66784 * 10 5 4 42 42 H 1.09000 * 109.53938 * 297.56710 * 10 5 4 43 43 H 0.97000 * 120.00303 * 359.97438 * 13 11 2 44 44 H 1.08997 * 109.46672 * 299.99470 * 14 13 11 45 45 H 1.09000 * 109.47056 * 59.99569 * 14 13 11 46 46 H 1.09004 * 109.47559 * 299.99925 * 15 14 13 47 47 H 1.09004 * 109.47283 * 59.99493 * 15 14 13 48 48 H 1.09002 * 111.00442 * 324.21589 * 18 16 15 49 49 H 1.09003 * 111.00593 * 88.02065 * 18 16 15 50 50 H 1.08995 * 110.36438 * 155.85020 * 19 18 16 51 51 H 1.09002 * 110.36144 * 278.06205 * 19 18 16 52 52 H 0.96996 * 120.00001 * 179.97438 * 24 23 21 53 53 H 1.08998 * 110.06356 * 241.87034 * 29 20 19 54 54 H 1.09003 * 109.85145 * 120.61175 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6514 0.0375 -2.4456 6 6 1.9373 1.4697 -2.2772 7 6 1.4634 2.2287 -3.5194 8 8 2.1000 1.6821 -4.6776 9 6 1.8423 0.2889 -4.8726 10 6 2.3200 -0.4897 -3.6441 11 6 2.0323 -0.7104 1.2304 12 8 2.7297 -1.6964 1.1192 13 7 1.7067 -0.2500 2.4545 14 6 2.1955 -0.9403 3.6507 15 6 1.6859 -0.2188 4.8999 16 6 2.1959 -0.9401 6.1492 17 1 1.9279 -1.9962 6.1194 18 6 1.6429 -0.2695 7.4345 19 6 2.7326 -0.6392 8.4716 20 7 4.0025 -0.5678 7.7264 21 6 5.2390 -0.3547 8.2752 22 1 6.1124 -0.3197 7.6410 23 6 5.3696 -0.1838 9.6465 24 7 4.3051 -0.2270 10.4194 25 14 7.0562 0.1075 10.3949 26 1 8.0806 0.1123 9.3199 27 1 7.0676 1.4172 11.0949 28 1 7.3608 -0.9748 11.3650 29 6 3.7226 -0.7680 6.2940 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7197 -1.2952 34 1 3.1264 -0.7994 -1.2056 35 1 3.0102 1.6142 -2.1497 36 1 1.4120 1.8449 -1.3989 37 1 1.7248 3.2827 -3.4237 38 1 0.3824 2.1286 -3.6168 39 1 0.7722 0.1324 -5.0093 40 1 2.3776 -0.0600 -5.7556 41 1 2.0741 -1.5449 -3.7636 42 1 3.3991 -0.3773 -3.5388 43 1 1.1493 0.5388 2.5436 44 1 1.8326 -1.9681 3.6508 45 1 3.2855 -0.9398 3.6505 46 1 2.0491 0.8089 4.8996 47 1 0.5959 -0.2189 4.9003 48 1 1.5711 0.8111 7.3114 49 1 0.6781 -0.6939 7.7124 50 1 2.7336 0.0777 9.2926 51 1 2.5691 -1.6482 8.8502 52 1 4.3965 -0.1079 11.3777 53 1 4.2322 -1.6620 5.9348 54 1 4.0529 0.1025 5.7271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691923867.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:10 Heat of formation + Delta-G solvation = -83.695538 kcal Electronic energy + Delta-G solvation = -29653.950490 eV Core-core repulsion = 25625.077582 eV Total energy + Delta-G solvation = -4028.872907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29829 -40.33258 -39.41332 -37.39171 -36.44433 -34.84428 -34.04457 -32.38013 -32.03768 -30.67857 -29.03715 -28.12862 -26.67313 -26.04215 -25.05532 -24.14240 -23.03960 -21.92635 -21.59113 -21.02069 -20.33096 -18.90286 -18.49458 -17.27853 -17.18300 -16.95158 -16.90265 -16.73615 -16.47944 -16.07515 -15.89276 -15.83527 -15.51127 -15.20500 -14.97118 -14.35919 -14.28250 -14.24547 -13.81801 -13.58252 -13.50118 -13.33703 -13.17703 -13.14076 -13.05260 -12.83068 -12.71570 -12.59149 -12.34865 -12.26626 -12.16928 -11.98767 -11.79776 -11.76115 -11.55492 -11.45208 -11.43162 -11.25347 -10.79440 -10.73540 -10.64817 -10.09989 -9.45784 -8.88922 -7.79008 -5.23230 1.44103 1.45101 1.55612 1.60619 2.08834 2.47782 2.77585 2.98798 3.29894 3.57892 3.71597 3.74746 3.78764 3.89968 3.94116 3.96903 4.03946 4.17202 4.19952 4.26838 4.28071 4.32598 4.34688 4.38191 4.60269 4.63404 4.66607 4.71107 4.73268 4.74245 4.77500 4.82038 4.88482 4.90625 4.98450 5.01406 5.02748 5.08830 5.12066 5.18840 5.26178 5.38260 5.42800 5.44900 5.51113 5.68850 5.82959 5.84099 5.90201 6.19966 6.31460 6.55181 7.10602 7.24442 7.78215 8.41998 9.22733 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.001674 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.708497 B =16722.716241 C =17294.965113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 H 0.119 0.881 4 C 0.080 3.920 5 N -0.529 5.529 6 C 0.005 3.995 7 C 0.062 3.938 8 O -0.409 6.409 9 C 0.066 3.934 10 C 0.015 3.985 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.712 5.712 14 C 0.123 3.877 15 C -0.099 4.099 16 C -0.085 4.085 17 H 0.077 0.923 18 C -0.121 4.121 19 C 0.148 3.852 20 N -0.629 5.629 21 C -0.240 4.240 22 H 0.076 0.924 23 C -0.069 4.069 24 N -0.948 5.948 25 Si 0.980 3.020 26 H -0.269 1.269 27 H -0.288 1.288 28 H -0.292 1.292 29 C 0.134 3.866 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.417 0.583 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.072 0.928 51 H -0.018 1.018 52 H 0.247 0.753 53 H 0.009 0.991 54 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.019 5.151 -29.251 32.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 H 0.137 0.863 4 C -0.048 4.048 5 N -0.254 5.254 6 C -0.123 4.123 7 C -0.015 4.015 8 O -0.328 6.328 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.364 5.364 14 C -0.001 4.001 15 C -0.137 4.137 16 C -0.104 4.104 17 H 0.095 0.905 18 C -0.159 4.159 19 C 0.024 3.976 20 N -0.356 5.356 21 C -0.369 4.369 22 H 0.094 0.906 23 C -0.261 4.261 24 N -0.598 5.598 25 Si 0.808 3.192 26 H -0.194 1.194 27 H -0.214 1.214 28 H -0.219 1.219 29 C 0.009 3.991 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.049 0.951 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.090 0.910 51 H 0.000 1.000 52 H 0.057 0.943 53 H 0.027 0.973 54 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.814 4.542 -29.338 32.744 hybrid contribution 1.974 -0.201 1.334 2.390 sum -11.840 4.341 -28.004 30.713 Atomic orbital electron populations 1.21703 0.89982 1.02884 1.04187 1.21427 0.99974 1.00927 0.90308 0.86326 1.21787 0.97489 0.97395 0.88164 1.62350 1.57643 1.02938 1.02505 1.23052 0.99679 0.88630 1.00954 1.22824 0.97632 0.97959 0.83057 1.87967 1.73979 1.24600 1.46299 1.22750 1.01438 0.80144 0.96761 1.22848 0.96438 1.00944 0.91124 1.21147 0.79187 0.84058 0.85768 1.90709 1.40084 1.28744 1.87557 1.45893 1.53334 1.32365 1.04854 1.21271 0.98456 0.96403 0.83982 1.21625 1.02316 0.99233 0.90491 1.22015 0.93367 1.00061 0.94986 0.90462 1.22873 0.98104 1.00354 0.94587 1.21761 0.83671 0.97325 0.94884 1.44951 1.03732 1.84221 1.02654 1.19487 0.85347 1.40748 0.91339 0.90627 1.25639 1.01220 1.02804 0.96454 1.70071 1.28157 1.57970 1.03597 0.84985 0.79115 0.76992 0.78088 1.19394 1.21440 1.21898 1.21620 0.95517 0.96833 0.85172 0.93062 0.90436 0.89471 0.90691 0.96057 0.95170 0.87050 0.87049 0.91279 0.91435 0.87182 0.88741 0.95128 0.74512 0.92164 0.93660 0.90657 0.88208 0.91270 0.89527 0.91046 1.00003 0.94314 0.97265 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.78 71.98 0.63 -0.57 16 2 C -0.11 -1.45 2.21 -11.54 -0.03 -1.48 16 3 H 0.12 1.21 5.95 -2.38 -0.01 1.19 16 4 C 0.08 1.37 4.01 86.30 0.35 1.71 16 5 N -0.53 -7.24 4.34 -895.21 -3.88 -11.12 16 6 C 0.00 0.05 4.79 86.31 0.41 0.47 16 7 C 0.06 0.65 7.01 72.01 0.50 1.16 16 8 O -0.41 -6.35 10.83 -148.98 -1.61 -7.97 16 9 C 0.07 0.76 7.01 72.01 0.50 1.27 16 10 C 0.01 0.20 5.62 86.31 0.49 0.68 16 11 C 0.51 11.07 7.15 87.66 0.63 11.70 16 12 O -0.59 -18.86 15.92 -3.05 -0.05 -18.91 16 13 N -0.71 -12.70 5.45 -463.06 -2.52 -15.22 16 14 C 0.12 2.87 5.54 86.38 0.48 3.34 16 15 C -0.10 -2.13 4.72 30.59 0.14 -1.98 16 16 C -0.08 -2.66 2.95 -9.61 -0.03 -2.69 16 17 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 18 C -0.12 -4.20 6.54 31.98 0.21 -3.99 16 19 C 0.15 7.39 5.89 86.86 0.51 7.90 16 20 N -0.63 -33.39 3.40 -691.28 -2.35 -35.74 16 21 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 24 N -0.95 -57.39 10.09 21.65 0.22 -57.17 16 25 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 C 0.13 5.59 6.13 86.67 0.53 6.12 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 32 H 0.09 0.68 7.31 -2.39 -0.02 0.66 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.02 0.47 7.89 -2.38 -0.02 0.45 16 35 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.82 5.49 -2.39 -0.01 0.80 16 37 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.42 4.40 7.89 -92.71 -0.73 3.67 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.04 1.31 7.58 -2.39 -0.02 1.29 16 46 H 0.07 1.61 8.01 -2.38 -0.02 1.59 16 47 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 48 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 49 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.07 4.04 5.87 -2.39 -0.01 4.03 16 51 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 52 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 53 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 54 H 0.03 1.08 7.73 -2.39 -0.02 1.06 16 Total: -1.00 -76.80 412.61 -1.37 -78.17 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.13 Total: 12.22 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.66 Total: 7.04 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -8.54 Total: -119.25 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.66 Total: -26.88 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -76.80 -1.37 -78.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691923867.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.525 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds