Wall clock time and date at job start Sat Apr 11 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46731 * 119.99579 * 2 1 3 5 5 C 1.50707 * 109.46629 * 185.00029 * 4 2 1 6 6 O 1.21276 * 120.00148 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99967 * 0.02562 * 7 5 4 9 9 C 1.46502 * 120.00143 * 179.97438 * 7 5 4 10 10 H 1.09000 * 109.47016 * 0.02562 * 9 7 5 11 11 C 1.53005 * 109.46969 * 119.99754 * 9 7 5 12 12 C 1.52998 * 109.47269 * 240.00280 * 9 7 5 13 13 N 1.46493 * 109.47138 * 55.00136 * 12 9 7 14 14 C 1.36939 * 119.99873 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.38815 * 120.00198 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99451 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46907 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47112 * 120.00516 * 18 16 14 21 21 H 1.48501 * 109.46935 * 240.00207 * 18 16 14 22 22 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 23 23 C 1.34775 * 119.99299 * 85.00358 * 22 2 1 24 24 O 1.21276 * 120.00699 * 359.97438 * 23 22 2 25 25 C 1.50709 * 119.99599 * 179.97438 * 23 22 2 26 26 C 1.55238 * 110.58096 * 294.87565 * 25 23 22 27 27 C 1.54894 * 102.58338 * 203.33573 * 26 25 23 28 28 C 1.54266 * 104.31305 * 37.93170 * 27 26 25 29 29 C 1.53869 * 106.60031 * 336.32486 * 28 27 26 30 30 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 31 31 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 33 33 H 1.08998 * 109.47203 * 304.99695 * 4 2 1 34 34 H 1.08996 * 109.47084 * 65.00294 * 4 2 1 35 35 H 1.09000 * 109.47222 * 90.00623 * 8 7 5 36 36 H 1.09010 * 109.46667 * 209.99845 * 8 7 5 37 37 H 1.08994 * 109.47078 * 329.99497 * 8 7 5 38 38 H 1.08998 * 109.47389 * 300.00494 * 11 9 7 39 39 H 1.09000 * 109.46738 * 60.00459 * 11 9 7 40 40 H 1.09005 * 109.46912 * 180.02562 * 11 9 7 41 41 H 1.09000 * 109.46726 * 174.99920 * 12 9 7 42 42 H 1.09004 * 109.46744 * 294.99571 * 12 9 7 43 43 H 0.97000 * 120.00587 * 359.97438 * 13 12 9 44 44 H 0.97003 * 119.99585 * 179.97438 * 17 16 14 45 45 H 0.96998 * 120.00025 * 264.99975 * 22 2 1 46 46 H 1.09006 * 110.43428 * 57.45967 * 25 23 22 47 47 H 1.08996 * 110.89448 * 85.05138 * 26 25 23 48 48 H 1.08993 * 110.76342 * 321.56803 * 26 25 23 49 49 H 1.09002 * 110.48891 * 279.18596 * 27 26 25 50 50 H 1.08998 * 110.48494 * 156.67683 * 27 26 25 51 51 H 1.09001 * 110.03084 * 95.60669 * 28 27 26 52 52 H 1.08996 * 110.03108 * 216.98559 * 28 27 26 53 53 H 1.08999 * 110.04012 * 119.28327 * 29 28 27 54 54 H 1.09006 * 110.02998 * 240.67078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1795 2.3349 8 6 3.4862 -1.8971 3.3840 9 6 5.6749 -1.0766 2.3964 10 1 6.0358 -0.5119 1.5368 11 6 6.0818 -0.3587 3.6849 12 6 6.2862 -2.4790 2.3790 13 7 5.8010 -3.2087 1.2050 14 6 6.2152 -4.4941 0.9783 15 1 6.9000 -4.9697 1.6648 16 6 5.7551 -5.1857 -0.1338 17 7 4.9210 -4.6057 -0.9707 18 14 6.3208 -6.9389 -0.4434 19 1 7.2508 -7.3568 0.6361 20 1 5.1432 -7.8434 -0.4594 21 1 7.0175 -7.0102 -1.7529 22 7 2.0183 -0.6908 -1.1961 23 6 2.1470 -0.0184 -2.3570 24 8 1.8582 1.1582 -2.4117 25 6 2.6499 -0.7288 -3.5874 26 6 4.1205 -1.1856 -3.3910 27 6 4.6330 -1.3088 -4.8475 28 6 3.9719 -0.1265 -5.5856 29 6 2.7111 0.2423 -4.7844 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.3905 -2.9469 3.1068 36 1 4.0319 -1.8180 4.3244 37 1 2.4946 -1.4603 3.5015 38 1 5.6462 0.6404 3.6973 39 1 5.7208 -0.9231 4.5447 40 1 7.1681 -0.2818 3.7304 41 1 7.3725 -2.4013 2.3351 42 1 5.9964 -3.0129 3.2841 43 1 5.1857 -2.7816 0.5886 44 1 4.5997 -5.0889 -1.7480 45 1 2.2490 -1.6319 -1.1524 46 1 2.0135 -1.5825 -3.8208 47 1 4.1637 -2.1493 -2.8835 48 1 4.6889 -0.4337 -2.8437 49 1 4.3169 -2.2561 -5.2843 50 1 5.7188 -1.2189 -4.8787 51 1 4.6551 0.7223 -5.6183 52 1 3.6983 -0.4243 -6.5978 53 1 2.7822 1.2700 -4.4282 54 1 1.8247 0.1239 -5.4078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698864665.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:25 Heat of formation + Delta-G solvation = -101.125764 kcal Electronic energy + Delta-G solvation = -32187.381705 eV Core-core repulsion = 28157.752967 eV Total energy + Delta-G solvation = -4029.628739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41210 -40.70255 -38.37813 -37.76954 -36.48901 -35.76868 -33.67759 -32.64365 -31.74433 -29.87504 -29.50955 -28.78571 -27.71809 -27.28927 -24.53496 -24.00323 -22.63580 -21.61928 -21.30742 -20.57650 -19.93288 -19.04062 -18.37521 -18.15799 -17.38383 -17.04113 -16.66838 -16.49580 -16.32465 -15.84850 -15.42776 -15.24164 -15.17906 -14.86215 -14.47898 -14.28794 -14.14655 -13.94660 -13.88081 -13.72378 -13.35926 -13.25783 -13.11678 -12.96859 -12.92111 -12.81798 -12.78438 -12.72545 -12.47094 -12.16210 -12.08104 -12.07618 -11.97848 -11.90347 -11.76878 -11.71744 -11.68286 -11.31088 -10.94994 -10.68386 -10.64461 -9.95928 -9.48071 -8.92170 -7.87276 -5.15275 1.47415 1.49433 1.57428 1.71368 1.79124 2.15305 2.34985 2.58160 3.44521 3.55620 3.59452 3.63545 3.72529 3.83936 3.92295 4.13431 4.22879 4.25748 4.32477 4.34971 4.44294 4.47298 4.51177 4.53253 4.55472 4.59724 4.62116 4.68750 4.77432 4.77945 4.79787 4.83474 4.88329 4.93063 5.00537 5.05959 5.07280 5.09509 5.17680 5.21169 5.26475 5.31230 5.33247 5.37714 5.45390 5.53808 5.65634 5.73945 6.32933 6.53923 6.62542 7.32825 7.35174 7.40609 8.14348 8.40467 9.34509 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007536 B = 0.004979 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.432243 B = 5621.972567 C = 7962.070099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 H 0.060 0.940 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.579 6.579 7 N -0.599 5.599 8 C 0.076 3.924 9 C 0.131 3.869 10 H 0.061 0.939 11 C -0.143 4.143 12 C 0.144 3.856 13 N -0.737 5.737 14 C -0.247 4.247 15 H 0.069 0.931 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.299 1.299 22 N -0.706 5.706 23 C 0.524 3.476 24 O -0.586 6.586 25 C -0.110 4.110 26 C -0.103 4.103 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.034 0.966 43 H 0.374 0.626 44 H 0.249 0.751 45 H 0.403 0.597 46 H 0.114 0.886 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.087 0.913 53 H 0.058 0.942 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 7.216 4.760 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.177 4.177 5 C 0.292 3.708 6 O -0.459 6.459 7 N -0.331 5.331 8 C -0.066 4.066 9 C 0.027 3.973 10 H 0.079 0.921 11 C -0.201 4.201 12 C 0.017 3.983 13 N -0.380 5.380 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.256 4.256 17 N -0.599 5.599 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.226 1.226 22 N -0.355 5.355 23 C 0.312 3.688 24 O -0.467 6.467 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.157 4.157 28 C -0.153 4.153 29 C -0.144 4.144 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.238 0.762 46 H 0.132 0.868 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.105 0.895 53 H 0.077 0.923 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.659 8.198 4.374 12.701 hybrid contribution 0.693 -1.398 -0.505 1.640 sum -7.966 6.800 3.869 11.165 Atomic orbital electron populations 1.22093 0.92638 1.03210 1.02930 1.20717 0.94862 0.96209 0.83168 0.92150 1.22083 0.90589 1.04500 1.00526 1.21180 0.91327 0.77823 0.80494 1.90714 1.71192 1.44635 1.39348 1.47810 1.06444 1.53908 1.24975 1.21941 0.97894 0.96245 0.90517 1.21164 0.80428 0.95870 0.99872 0.92051 1.21964 1.02390 1.00100 0.95653 1.21139 0.95860 0.91099 0.90226 1.42413 1.55569 1.12830 1.27141 1.19548 1.21517 0.90663 1.06196 0.91287 1.25375 1.00786 1.01613 0.97854 1.69801 1.37217 1.37606 1.15275 0.85230 0.77235 0.81026 0.77123 1.19750 1.21899 1.22640 1.45970 1.66056 1.14044 1.09425 1.20753 0.75862 0.86646 0.85525 1.90579 1.52747 1.17431 1.85979 1.22248 0.97990 0.99797 0.93072 1.22318 0.93347 1.00390 0.98019 1.22323 1.00098 0.99413 0.93824 1.22118 0.96078 0.97675 0.99464 1.22021 0.99157 0.98593 0.94628 0.93730 0.90897 0.89007 0.83877 0.87073 0.93931 0.89377 0.88138 0.92001 0.90237 0.90690 0.96165 0.94810 0.79331 0.94150 0.76231 0.86826 0.91853 0.94332 0.90462 0.91988 0.92001 0.89485 0.92302 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.16 4.30 2.13 44.99 0.10 4.39 16 3 H 0.06 2.07 7.39 -2.39 -0.02 2.05 16 4 C -0.14 -3.21 3.80 29.85 0.11 -3.10 16 5 C 0.50 16.64 7.24 87.66 0.63 17.27 16 6 O -0.58 -24.92 14.68 -3.02 -0.04 -24.97 16 7 N -0.60 -17.92 2.24 -822.57 -1.85 -19.76 16 8 C 0.08 1.64 9.40 127.77 1.20 2.84 16 9 C 0.13 4.32 2.80 44.99 0.13 4.45 16 10 H 0.06 2.50 6.90 -2.39 -0.02 2.48 16 11 C -0.14 -3.31 9.17 71.98 0.66 -2.65 16 12 C 0.14 5.61 5.55 86.38 0.48 6.09 16 13 N -0.74 -36.63 5.43 -343.46 -1.87 -38.50 16 14 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 15 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 16 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 17 N -0.95 -54.34 13.06 21.65 0.28 -54.05 16 18 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 22 N -0.71 -22.81 4.21 -442.53 -1.86 -24.67 16 23 C 0.52 18.72 7.10 87.66 0.62 19.34 16 24 O -0.59 -24.13 15.09 -3.02 -0.05 -24.17 16 25 C -0.11 -3.44 3.25 -10.34 -0.03 -3.47 16 26 C -0.10 -3.65 6.34 32.01 0.20 -3.45 16 27 C -0.12 -3.47 6.82 31.67 0.22 -3.25 16 28 C -0.12 -2.90 6.80 31.32 0.21 -2.68 16 29 C -0.11 -2.98 6.18 31.32 0.19 -2.79 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.14 2.13 7.40 -2.39 -0.02 2.11 16 34 H 0.11 2.43 8.11 -2.39 -0.02 2.41 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.55 6.43 -2.38 -0.02 1.54 16 37 H 0.10 1.42 6.44 -2.39 -0.02 1.40 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.50 6.66 -2.39 -0.02 1.49 16 40 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.03 1.23 7.84 -2.38 -0.02 1.22 16 43 H 0.37 20.21 7.06 -92.71 -0.65 19.56 16 44 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.40 13.35 8.60 -92.71 -0.80 12.55 16 46 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 47 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 49 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.06 1.93 6.85 -2.39 -0.02 1.91 16 54 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -74.38 425.03 2.79 -71.59 By element: Atomic # 1 Polarization: 53.21 SS G_CDS: -0.57 Total: 52.64 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.71 Total: 14.96 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -5.29 Total: -136.99 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.38 2.79 -71.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698864665.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.534 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds