Wall clock time and date at job start Sat Apr 11 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46732 * 2 1 4 4 C 1.52995 * 109.47023 * 120.00357 * 2 1 3 5 5 C 1.53003 * 109.46836 * 185.00471 * 4 2 1 6 6 N 1.46500 * 109.47263 * 180.02562 * 5 4 2 7 7 C 1.36934 * 120.00220 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00053 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00108 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00123 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46658 * 90.00202 * 11 9 7 13 13 H 1.48497 * 109.47232 * 209.99954 * 11 9 7 14 14 H 1.48492 * 109.46986 * 330.00208 * 11 9 7 15 15 N 1.46500 * 109.46846 * 240.00436 * 2 1 3 16 16 C 1.34771 * 120.00240 * 85.00428 * 15 2 1 17 17 O 1.21281 * 120.00270 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99982 * 179.97438 * 16 15 2 19 19 H 1.08999 * 110.32808 * 26.32086 * 18 16 15 20 20 C 1.54911 * 110.36414 * 264.08318 * 18 16 15 21 21 C 1.55153 * 101.58449 * 204.15347 * 20 18 16 22 22 C 1.54327 * 102.94150 * 35.50324 * 21 20 18 23 23 N 1.47184 * 107.29462 * 337.71476 * 22 21 20 24 24 C 1.34772 * 125.73744 * 179.04152 * 23 22 21 25 25 O 1.21283 * 120.00233 * 184.82129 * 24 23 22 26 26 C 1.50702 * 120.00080 * 4.82273 * 24 23 22 27 27 C 1.52999 * 109.47484 * 185.31066 * 26 24 23 28 28 C 1.52999 * 109.47155 * 305.31493 * 26 24 23 29 29 C 1.53008 * 109.47066 * 65.31081 * 26 24 23 30 30 H 1.09007 * 109.46649 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47041 * 299.99223 * 1 2 3 32 32 H 1.09000 * 109.47332 * 60.00039 * 1 2 3 33 33 H 1.08999 * 109.47378 * 304.99891 * 4 2 1 34 34 H 1.08997 * 109.47743 * 64.99969 * 4 2 1 35 35 H 1.09002 * 109.47011 * 299.99476 * 5 4 2 36 36 H 1.09002 * 109.47311 * 59.99761 * 5 4 2 37 37 H 0.97001 * 119.99577 * 359.97438 * 6 5 4 38 38 H 0.97005 * 119.99867 * 180.02562 * 10 9 7 39 39 H 0.97000 * 120.00111 * 264.99117 * 15 2 1 40 40 H 1.09000 * 111.00657 * 322.23121 * 20 18 16 41 41 H 1.09005 * 111.00414 * 86.07768 * 20 18 16 42 42 H 1.08997 * 110.72082 * 153.86720 * 21 20 18 43 43 H 1.09000 * 110.71827 * 276.96542 * 21 20 18 44 44 H 1.09002 * 109.88297 * 97.22615 * 22 21 20 45 45 H 1.09006 * 109.87911 * 218.23985 * 22 21 20 46 46 H 1.09004 * 109.46753 * 59.99573 * 27 26 24 47 47 H 1.08994 * 109.47217 * 180.02562 * 27 26 24 48 48 H 1.09008 * 109.46930 * 300.00282 * 27 26 24 49 49 H 1.08992 * 109.47470 * 75.96101 * 28 26 24 50 50 H 1.08997 * 109.46952 * 195.97077 * 28 26 24 51 51 H 1.09001 * 109.46974 * 315.96533 * 28 26 24 52 52 H 1.09003 * 109.46734 * 53.14415 * 29 26 24 53 53 H 1.08995 * 109.46936 * 173.14103 * 29 26 24 54 54 H 1.09001 * 109.46766 * 293.14869 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0533 -1.3044 2.5094 7 6 5.3954 -1.3412 2.7788 8 1 6.0939 -0.8611 2.1095 9 6 5.8582 -1.9957 3.9121 10 7 5.0070 -2.5813 4.7275 11 14 7.6891 -2.0465 4.2792 12 1 8.0603 -0.8722 5.1089 13 1 8.0118 -3.2949 5.0158 14 1 8.4505 -2.0128 3.0048 15 7 2.0183 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8584 1.1585 -2.4117 18 6 2.6499 -0.7284 -3.5875 19 1 2.4261 -1.7935 -3.5279 20 6 4.1741 -0.5062 -3.7532 21 6 4.3566 -0.7234 -5.2785 22 6 3.0580 -0.1349 -5.8693 23 7 2.0471 -0.1443 -4.7995 24 6 0.7816 0.3064 -4.9083 25 8 0.0601 0.3293 -3.9337 26 6 0.2631 0.7819 -6.2410 27 6 -1.1427 1.3596 -6.0647 28 6 1.1933 1.8636 -6.7938 29 6 0.2121 -0.3947 -7.2177 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2619 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.4260 -1.7360 3.1103 38 1 5.3304 -3.0383 5.5197 39 1 2.2491 -1.6317 -1.1528 40 1 4.4546 0.5073 -3.4665 41 1 4.7405 -1.2427 -3.1831 42 1 5.2276 -0.1795 -5.6440 43 1 4.4419 -1.7852 -5.5094 44 1 3.2336 0.8869 -6.2060 45 1 2.7200 -0.7476 -6.7051 46 1 -1.1063 2.1978 -5.3688 47 1 -1.5179 1.7031 -7.0286 48 1 -1.8054 0.5889 -5.6709 49 1 2.0993 1.3993 -7.1832 50 1 0.6880 2.4026 -7.5950 51 1 1.4554 2.5594 -5.9967 52 1 -0.3511 -1.2139 -6.7706 53 1 -0.2751 -0.0800 -8.1405 54 1 1.2262 -0.7285 -7.4376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699109196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:38 Heat of formation + Delta-G solvation = -91.317063 kcal Electronic energy + Delta-G solvation = -31310.338302 eV Core-core repulsion = 27281.134901 eV Total energy + Delta-G solvation = -4029.203402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97146 -40.38917 -38.51641 -37.68293 -36.63055 -36.05944 -33.64875 -32.62887 -32.26664 -30.30434 -29.42159 -28.28909 -28.03962 -26.01474 -25.73267 -23.88557 -23.01767 -22.42996 -21.78944 -21.39775 -19.93122 -19.15742 -18.47364 -17.77986 -17.13453 -16.78551 -16.66951 -16.14657 -15.87361 -15.82646 -15.48529 -15.20571 -15.13944 -14.96275 -14.79034 -14.55192 -14.37449 -14.31975 -14.09819 -13.59659 -13.39535 -13.13849 -13.13149 -13.10599 -12.96314 -12.90324 -12.83625 -12.63536 -12.53284 -12.41236 -12.37450 -12.26780 -12.01132 -11.97510 -11.91548 -11.66309 -11.65447 -11.53964 -10.96450 -10.80954 -10.62178 -10.05662 -9.61869 -9.02428 -7.96409 -5.26005 1.46860 1.49088 1.52582 1.57452 1.68518 2.00367 2.30908 2.54950 3.33863 3.37104 3.55259 3.60760 3.62972 3.82673 3.85763 3.92071 4.01572 4.06360 4.11712 4.14095 4.27679 4.36261 4.41066 4.50406 4.58867 4.62601 4.68470 4.71929 4.72968 4.74186 4.78586 4.83028 4.87571 4.92110 4.94386 4.96559 5.01530 5.08059 5.19159 5.19662 5.20234 5.22634 5.27991 5.28653 5.34920 5.39726 5.47480 5.58371 6.25599 6.47386 6.61005 7.18589 7.32019 7.35190 8.06450 8.31135 9.27017 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.002455 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.818287 B =11401.147078 C =12532.573864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.062 0.938 4 C -0.117 4.117 5 C 0.158 3.842 6 N -0.746 5.746 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.975 3.025 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.267 1.267 15 N -0.714 5.714 16 C 0.513 3.487 17 O -0.568 6.568 18 C 0.111 3.889 19 H 0.110 0.890 20 C -0.121 4.121 21 C -0.119 4.119 22 C 0.083 3.917 23 N -0.605 5.605 24 C 0.525 3.475 25 O -0.570 6.570 26 C -0.078 4.078 27 C -0.124 4.124 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.005 0.995 37 H 0.375 0.625 38 H 0.252 0.748 39 H 0.409 0.591 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.034 0.966 47 H 0.090 0.910 48 H 0.045 0.955 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.034 0.966 52 H 0.047 0.953 53 H 0.090 0.910 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 2.598 -31.559 32.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.080 0.920 4 C -0.155 4.155 5 C 0.032 3.968 6 N -0.389 5.389 7 C -0.379 4.379 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.619 5.619 11 Si 0.803 3.197 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.192 1.192 15 N -0.367 5.367 16 C 0.300 3.700 17 O -0.446 6.446 18 C 0.004 3.996 19 H 0.128 0.872 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.038 4.038 23 N -0.340 5.340 24 C 0.315 3.685 25 O -0.448 6.448 26 C -0.081 4.081 27 C -0.182 4.182 28 C -0.203 4.203 29 C -0.194 4.194 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.207 0.793 38 H 0.061 0.939 39 H 0.245 0.755 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.053 0.947 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.111 0.889 50 H 0.105 0.895 51 H 0.053 0.947 52 H 0.066 0.934 53 H 0.109 0.891 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.209 3.530 -31.146 32.163 hybrid contribution 0.485 -0.361 1.466 1.586 sum -6.724 3.169 -29.680 30.596 Atomic orbital electron populations 1.22012 0.94552 1.02406 1.01632 1.20678 0.94150 0.96160 0.83682 0.91994 1.21873 0.95049 1.01568 0.96981 1.20707 0.93006 0.94100 0.89027 1.42573 1.04596 1.65213 1.26477 1.19605 0.85151 1.27665 1.05462 0.90870 1.25596 1.02182 1.01189 0.97788 1.69818 1.34697 1.41874 1.15546 0.85127 0.79947 0.76623 0.77987 1.21592 1.21920 1.19193 1.45988 1.67020 1.14382 1.09286 1.20957 0.76654 0.87228 0.85195 1.90645 1.50637 1.18132 1.85207 1.22035 0.95809 0.97975 0.83795 0.87237 1.22778 0.90228 1.03284 0.99625 1.22710 0.97123 1.03735 0.92084 1.22837 0.87701 1.03043 0.90236 1.48431 1.11267 1.62075 1.12208 1.21059 0.80181 0.75882 0.91339 1.90711 1.57666 1.55506 1.40961 1.20800 0.97285 0.98655 0.91392 1.21659 0.94138 1.00123 1.02267 1.22132 1.00059 0.97139 1.01017 1.21944 1.03877 0.95175 0.98387 0.91596 0.90713 0.94415 0.90382 0.90323 0.95435 0.97722 0.79317 0.93915 0.75524 0.91958 0.87537 0.87583 0.87939 0.89730 0.87905 0.94664 0.89121 0.93536 0.88873 0.89497 0.94706 0.93421 0.89140 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.48 71.98 0.68 -3.69 16 2 C 0.16 4.99 2.57 44.99 0.12 5.10 16 3 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 4 C -0.12 -3.82 4.87 30.59 0.15 -3.67 16 5 C 0.16 6.47 6.15 86.38 0.53 7.01 16 6 N -0.75 -38.48 5.60 -343.45 -1.92 -40.40 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 10 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 11 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 N -0.71 -20.51 4.53 -442.53 -2.00 -22.52 16 16 C 0.51 15.96 5.61 87.66 0.49 16.45 16 17 O -0.57 -22.78 14.61 17.98 0.26 -22.52 16 18 C 0.11 2.41 3.56 44.72 0.16 2.57 16 19 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 20 C -0.12 -1.94 6.49 31.99 0.21 -1.74 16 21 C -0.12 -0.97 6.95 31.78 0.22 -0.75 16 22 C 0.08 0.87 5.09 86.70 0.44 1.31 16 23 N -0.60 -12.42 3.12 -791.82 -2.47 -14.89 16 24 C 0.53 13.61 5.97 87.66 0.52 14.13 16 25 O -0.57 -20.72 13.70 17.97 0.25 -20.47 16 26 C -0.08 -1.33 0.75 -52.93 -0.04 -1.37 16 27 C -0.12 -2.36 7.71 71.98 0.56 -1.80 16 28 C -0.15 -1.87 7.64 71.98 0.55 -1.32 16 29 C -0.14 -1.40 8.28 71.98 0.60 -0.80 16 30 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.37 20.37 7.67 -92.71 -0.71 19.65 16 38 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 39 H 0.41 9.80 8.60 -92.71 -0.80 9.00 16 40 H 0.06 1.29 8.05 -2.39 -0.02 1.28 16 41 H 0.11 1.46 8.14 -2.38 -0.02 1.45 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 0.81 5.67 -2.39 -0.01 0.80 16 45 H 0.10 0.54 5.68 -2.38 -0.01 0.53 16 46 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.05 1.01 8.04 -2.38 -0.02 0.99 16 49 H 0.09 0.72 4.93 -2.39 -0.01 0.71 16 50 H 0.09 0.76 8.04 -2.39 -0.02 0.74 16 51 H 0.03 0.64 8.03 -2.39 -0.02 0.62 16 52 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 54 H 0.08 0.53 5.22 -2.39 -0.01 0.51 16 Total: -1.00 -82.95 417.49 2.29 -80.65 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.62 Total: 36.81 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.49 Total: 14.40 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -6.12 Total: -137.00 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: 0.51 Total: -42.99 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.95 2.29 -80.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699109196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.663 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds