Wall clock time and date at job start Sat Apr 11 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46906 * 2 1 4 4 C 1.53005 * 109.46824 * 240.00243 * 2 1 3 5 5 C 1.50701 * 109.46676 * 174.99835 * 4 2 1 6 6 O 1.21276 * 120.00073 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99489 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99551 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46866 * 34.99420 * 8 7 5 10 10 C 1.53001 * 109.46749 * 274.99448 * 8 7 5 11 11 C 1.52998 * 109.46975 * 155.00120 * 8 7 5 12 12 N 1.46504 * 109.46893 * 304.99525 * 11 8 7 13 13 C 1.46502 * 119.99941 * 270.00355 * 12 11 8 14 14 C 1.36932 * 119.99930 * 89.99846 * 12 11 8 15 15 H 1.08004 * 120.00299 * 20.31045 * 14 12 11 16 16 C 1.38812 * 120.00169 * 200.30358 * 14 12 11 17 17 N 1.31616 * 120.00143 * 15.02080 * 16 14 12 18 18 Si 1.86802 * 120.00096 * 195.02104 * 16 14 12 19 19 H 1.48501 * 109.47421 * 85.00363 * 18 16 14 20 20 H 1.48499 * 109.47099 * 205.00491 * 18 16 14 21 21 H 1.48507 * 109.47138 * 324.99972 * 18 16 14 22 22 N 1.46494 * 109.47367 * 120.00295 * 2 1 3 23 23 C 1.34784 * 119.99941 * 275.00231 * 22 2 1 24 24 O 1.21284 * 119.99732 * 359.97438 * 23 22 2 25 25 C 1.50692 * 120.00010 * 180.02562 * 23 22 2 26 26 C 1.54273 * 110.03344 * 297.90197 * 25 23 22 27 27 C 1.54958 * 104.16321 * 217.13991 * 26 25 23 28 28 C 1.54890 * 102.77745 * 37.88425 * 27 26 25 29 29 C 1.53875 * 110.03152 * 180.68808 * 25 23 22 30 30 H 1.08994 * 109.46903 * 299.99306 * 1 2 3 31 31 H 1.08997 * 109.47177 * 59.99762 * 1 2 3 32 32 H 1.09009 * 109.46685 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47342 * 294.99697 * 4 2 1 34 34 H 1.09004 * 109.46993 * 55.00060 * 4 2 1 35 35 H 0.96997 * 120.00427 * 359.97438 * 7 5 4 36 36 H 1.08994 * 109.47566 * 300.00164 * 10 8 7 37 37 H 1.09004 * 109.46918 * 60.00544 * 10 8 7 38 38 H 1.09002 * 109.47222 * 179.97438 * 10 8 7 39 39 H 1.08995 * 109.47221 * 64.99557 * 11 8 7 40 40 H 1.08996 * 109.46917 * 185.00057 * 11 8 7 41 41 H 1.09001 * 109.47051 * 95.10311 * 13 12 11 42 42 H 1.09006 * 109.46651 * 215.10334 * 13 12 11 43 43 H 1.08993 * 109.47020 * 335.10408 * 13 12 11 44 44 H 0.96995 * 120.00346 * 180.02562 * 17 16 14 45 45 H 0.96997 * 120.00159 * 94.99841 * 22 2 1 46 46 H 1.09005 * 110.02092 * 59.29582 * 25 23 22 47 47 H 1.09001 * 110.48400 * 335.79316 * 26 25 23 48 48 H 1.09004 * 110.48200 * 98.42900 * 26 25 23 49 49 H 1.09007 * 110.71698 * 279.57590 * 27 26 25 50 50 H 1.08991 * 110.92650 * 156.29850 * 27 26 25 51 51 H 1.08997 * 110.48846 * 203.40574 * 28 27 26 52 52 H 1.09004 * 110.59976 * 80.82027 * 28 27 26 53 53 H 1.09001 * 110.02978 * 238.56821 * 29 25 23 54 54 H 1.08997 * 110.03172 * 359.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 8 4.1449 -0.0203 -0.4446 7 7 4.2148 -1.1796 -2.3350 8 6 5.6750 -1.0766 -2.3964 9 1 6.0843 -1.1098 -1.3868 10 6 6.0655 0.2446 -3.0620 11 6 6.2346 -2.2436 -3.2124 12 7 5.7616 -3.5082 -2.6438 13 6 6.5430 -4.1811 -1.6031 14 6 4.5891 -4.0612 -3.0849 15 1 4.1831 -3.7730 -4.0433 16 6 3.9224 -4.9922 -2.3003 17 7 4.2379 -5.1287 -1.0298 18 14 2.5774 -6.0514 -3.0476 19 1 3.1861 -7.2424 -3.6926 20 1 1.6424 -6.4899 -1.9805 21 1 1.8342 -5.2637 -4.0638 22 7 2.0184 -0.6906 1.1961 23 6 2.1471 -0.0183 2.3571 24 8 1.8590 1.1586 2.4115 25 6 2.6500 -0.7286 3.5873 26 6 1.6795 -1.8628 3.9766 27 6 1.6765 -1.8442 5.5261 28 6 1.7425 -0.3311 5.8506 29 6 2.6905 0.2448 4.7784 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7517 -1.7715 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.7325 -1.6547 -3.0296 36 1 5.6561 0.2778 -4.0716 37 1 5.6667 1.0760 -2.4806 38 1 7.1518 0.3215 -3.1073 39 1 5.8959 -2.1603 -4.2450 40 1 7.3239 -2.2174 -3.1840 41 1 6.1605 -3.8991 -0.6221 42 1 6.4611 -5.2608 -1.7284 43 1 7.5885 -3.8841 -1.6846 44 1 3.7723 -5.7795 -0.4817 45 1 2.2491 -1.6318 1.1525 46 1 3.6446 -1.1349 3.4033 47 1 0.6806 -1.6593 3.5908 48 1 2.0445 -2.8209 3.6065 49 1 2.5511 -2.3622 5.9197 50 1 0.7598 -2.2838 5.9189 51 1 2.1531 -0.1723 6.8477 52 1 0.7545 0.1221 5.7693 53 1 3.7045 0.3102 5.1729 54 1 2.3468 1.2310 4.4665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699478416.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:41 Heat of formation + Delta-G solvation = -96.512654 kcal Electronic energy + Delta-G solvation = -31767.220142 eV Core-core repulsion = 27737.791443 eV Total energy + Delta-G solvation = -4029.428699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36182 -40.50831 -38.37189 -37.88741 -36.60075 -35.57346 -33.27842 -32.75714 -31.62980 -29.86769 -29.52781 -28.69514 -28.00885 -27.33874 -24.12157 -23.47506 -22.37367 -21.64353 -21.39624 -21.06697 -20.46345 -18.73600 -18.45476 -17.82346 -17.46459 -16.90475 -16.66045 -16.60670 -15.87581 -15.75288 -15.65118 -15.44773 -15.05643 -14.84032 -14.47403 -14.41800 -14.22509 -13.92531 -13.86471 -13.57147 -13.36408 -13.08483 -12.99269 -12.84126 -12.75903 -12.67874 -12.66252 -12.48799 -12.26093 -12.14468 -12.03781 -11.98005 -11.97702 -11.91008 -11.90463 -11.69276 -11.63552 -11.43723 -10.70343 -10.64759 -10.54197 -10.01177 -9.72067 -8.74280 -7.71638 -5.17338 1.51339 1.56905 1.61204 1.69789 1.90262 2.29980 2.51866 2.58522 3.42770 3.51386 3.64499 3.69070 3.72916 3.81464 3.93086 4.18815 4.22372 4.25042 4.43187 4.44525 4.49791 4.50255 4.53592 4.56685 4.61857 4.66564 4.70220 4.76594 4.78056 4.79980 4.86081 4.93050 4.94232 5.01796 5.04770 5.06773 5.19868 5.20195 5.21152 5.27625 5.34573 5.35103 5.41823 5.43542 5.61381 5.70071 5.76021 5.87188 6.38834 6.56464 6.88683 7.21980 7.28974 7.55804 7.94145 8.40925 9.31543 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003693 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.652639 B = 7580.295579 C = 8428.033855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.062 0.938 4 C -0.142 4.142 5 C 0.506 3.494 6 O -0.592 6.592 7 N -0.688 5.688 8 C 0.125 3.875 9 H 0.035 0.965 10 C -0.146 4.146 11 C 0.142 3.858 12 N -0.609 5.609 13 C 0.179 3.821 14 C -0.249 4.249 15 H 0.080 0.920 16 C -0.040 4.040 17 N -0.930 5.930 18 Si 0.951 3.049 19 H -0.299 1.299 20 H -0.303 1.303 21 H -0.261 1.261 22 N -0.706 5.706 23 C 0.522 3.478 24 O -0.585 6.585 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.118 4.118 29 C -0.119 4.119 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.406 0.594 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.068 0.932 41 H -0.005 1.005 42 H 0.017 0.983 43 H 0.023 0.977 44 H 0.243 0.757 45 H 0.402 0.598 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.062 0.938 53 H 0.071 0.929 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 6.783 3.280 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.182 4.182 5 C 0.293 3.707 6 O -0.473 6.473 7 N -0.338 5.338 8 C 0.017 3.983 9 H 0.054 0.946 10 C -0.205 4.205 11 C 0.015 3.985 12 N -0.332 5.332 13 C 0.034 3.966 14 C -0.378 4.378 15 H 0.098 0.902 16 C -0.236 4.236 17 N -0.577 5.577 18 Si 0.782 3.218 19 H -0.227 1.227 20 H -0.230 1.230 21 H -0.186 1.186 22 N -0.355 5.355 23 C 0.310 3.690 24 O -0.466 6.466 25 C -0.137 4.137 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.157 4.157 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.236 0.764 46 H 0.109 0.891 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.081 0.919 53 H 0.090 0.910 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.469 7.904 3.970 10.399 hybrid contribution -0.433 -1.436 -0.407 1.554 sum -5.901 6.468 3.563 9.453 Atomic orbital electron populations 1.22096 0.92915 1.03044 1.02887 1.20639 0.94628 0.96167 0.83059 0.91952 1.22017 0.91438 1.04162 1.00559 1.20944 0.90945 0.77892 0.80917 1.90650 1.71347 1.45305 1.40020 1.45774 1.07492 1.54262 1.26223 1.21598 0.80887 0.96571 0.99277 0.94626 1.22016 1.02110 0.95684 1.00680 1.21351 0.97731 0.83399 0.96024 1.44102 1.23399 1.21152 1.44513 1.20480 0.90285 0.95120 0.90728 1.19421 0.99156 1.19732 0.99539 0.90248 1.25496 1.00447 1.02449 0.95166 1.70264 1.44779 1.37061 1.05594 0.85528 0.79459 0.79523 0.77334 1.22718 1.23006 1.18552 1.45942 1.66246 1.13932 1.09377 1.20871 0.76142 0.86654 0.85374 1.90578 1.52840 1.17548 1.85664 1.21991 1.01087 0.97669 0.92915 1.22352 0.98105 0.96628 0.97783 1.22507 1.03033 0.96258 0.93687 1.22336 0.99126 0.95574 0.98463 1.22143 1.00878 0.98771 0.93886 0.93446 0.89304 0.91178 0.87781 0.84711 0.75765 0.90989 0.94578 0.90579 0.91420 0.91409 0.98647 0.96376 0.95853 0.94753 0.76375 0.89064 0.91561 0.90450 0.90470 0.89854 0.89922 0.91921 0.90987 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.48 71.98 0.68 -2.81 16 2 C 0.16 4.72 2.14 45.00 0.10 4.82 16 3 H 0.06 2.22 7.39 -2.39 -0.02 2.21 16 4 C -0.14 -3.92 5.24 29.85 0.16 -3.76 16 5 C 0.51 18.38 7.66 87.66 0.67 19.05 16 6 O -0.59 -26.10 15.02 -3.02 -0.05 -26.15 16 7 N -0.69 -24.03 4.49 -442.52 -1.99 -26.02 16 8 C 0.12 4.37 2.88 44.99 0.13 4.50 16 9 H 0.04 1.53 7.58 -2.39 -0.02 1.52 16 10 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 11 C 0.14 4.95 5.36 86.38 0.46 5.41 16 12 N -0.61 -26.98 2.82 -726.94 -2.05 -29.03 16 13 C 0.18 8.45 9.02 127.77 1.15 9.60 16 14 C -0.25 -11.57 8.02 84.03 0.67 -10.90 16 15 H 0.08 3.46 7.86 -2.91 -0.02 3.44 16 16 C -0.04 -1.96 5.06 84.86 0.43 -1.53 16 17 N -0.93 -50.01 10.67 21.65 0.23 -49.78 16 18 Si 0.95 40.24 29.58 68.60 2.03 42.27 16 19 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 N -0.71 -22.53 4.16 -442.53 -1.84 -24.37 16 23 C 0.52 17.84 6.96 87.65 0.61 18.45 16 24 O -0.59 -23.60 14.87 -3.04 -0.05 -23.65 16 25 C -0.12 -3.24 3.29 -10.82 -0.04 -3.28 16 26 C -0.11 -2.52 6.30 31.70 0.20 -2.32 16 27 C -0.12 -2.17 6.91 31.91 0.22 -1.95 16 28 C -0.12 -2.34 6.83 31.67 0.22 -2.12 16 29 C -0.12 -3.08 6.40 31.32 0.20 -2.88 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 35 H 0.41 13.49 7.40 -92.71 -0.69 12.80 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.13 8.03 -2.39 -0.02 2.12 16 40 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 41 H 0.00 -0.26 7.40 -2.39 -0.02 -0.27 16 42 H 0.02 0.91 7.21 -2.38 -0.02 0.89 16 43 H 0.02 0.95 7.83 -2.39 -0.02 0.93 16 44 H 0.24 13.00 8.31 -92.71 -0.77 12.23 16 45 H 0.40 12.72 8.59 -92.71 -0.80 11.93 16 46 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 47 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 49 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.06 2.00 6.39 -2.39 -0.02 1.99 16 Total: -1.00 -67.36 425.78 2.24 -65.12 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.61 Total: 44.75 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.55 Total: 26.87 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -5.64 Total: -129.20 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.09 Total: -49.80 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.36 2.24 -65.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699478416.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.393 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds