Wall clock time and date at job start Sat Apr 11 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46699 * 2 1 4 4 C 1.53000 * 109.47262 * 240.00737 * 2 1 3 5 5 N 1.46497 * 109.47045 * 184.99643 * 4 2 1 6 6 C 1.46498 * 119.99999 * 269.99441 * 5 4 2 7 7 C 1.36932 * 120.00042 * 90.00333 * 5 4 2 8 8 H 1.07999 * 120.00357 * 20.29918 * 7 5 4 9 9 C 1.38819 * 120.00143 * 200.30427 * 7 5 4 10 10 N 1.31617 * 119.99810 * 15.00563 * 9 7 5 11 11 Si 1.86800 * 120.00024 * 195.01378 * 9 7 5 12 12 H 1.48497 * 109.47185 * 84.99794 * 11 9 7 13 13 H 1.48502 * 109.46723 * 205.00143 * 11 9 7 14 14 H 1.48502 * 109.47005 * 324.99706 * 11 9 7 15 15 N 1.46492 * 109.47550 * 120.00379 * 2 1 3 16 16 C 1.34778 * 119.99981 * 275.00357 * 15 2 1 17 17 O 1.21280 * 119.99974 * 359.97438 * 16 15 2 18 18 C 1.50707 * 119.99957 * 179.97438 * 16 15 2 19 19 C 1.53001 * 109.47000 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.47306 * 305.00280 * 19 18 16 21 21 C 1.53001 * 109.46925 * 185.00023 * 19 18 16 22 22 N 1.46502 * 109.47032 * 65.00232 * 19 18 16 23 23 C 1.34777 * 120.00054 * 204.99864 * 22 19 18 24 24 O 1.21283 * 119.99973 * 359.97438 * 23 22 19 25 25 C 1.50698 * 119.99832 * 180.02562 * 23 22 19 26 26 C 1.55236 * 110.57912 * 294.87133 * 25 23 22 27 27 C 1.54888 * 102.58602 * 203.34120 * 26 25 23 28 28 C 1.54267 * 104.31419 * 37.93271 * 27 26 25 29 29 C 1.53872 * 106.59882 * 336.32516 * 28 27 26 30 30 H 1.09001 * 109.47077 * 299.99444 * 1 2 3 31 31 H 1.09001 * 109.47201 * 59.99432 * 1 2 3 32 32 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46713 * 304.99741 * 4 2 1 34 34 H 1.09006 * 109.47455 * 64.99242 * 4 2 1 35 35 H 1.08998 * 109.47202 * 95.11016 * 6 5 4 36 36 H 1.09000 * 109.47469 * 215.10905 * 6 5 4 37 37 H 1.08996 * 109.47435 * 335.10784 * 6 5 4 38 38 H 0.97003 * 119.99808 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00386 * 94.99688 * 15 2 1 40 40 H 1.09005 * 109.46868 * 60.00310 * 18 16 15 41 41 H 1.08995 * 109.47093 * 299.99886 * 18 16 15 42 42 H 1.09001 * 109.46628 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47338 * 300.00238 * 21 19 18 44 44 H 1.08998 * 109.46809 * 60.00381 * 21 19 18 45 45 H 0.97002 * 119.99904 * 24.99671 * 22 19 18 46 46 H 1.08992 * 110.43921 * 57.45832 * 25 23 22 47 47 H 1.08998 * 110.89865 * 85.05160 * 26 25 23 48 48 H 1.08997 * 110.76809 * 321.56916 * 26 25 23 49 49 H 1.09007 * 110.48842 * 279.18868 * 27 26 25 50 50 H 1.09001 * 110.49033 * 156.67881 * 27 26 25 51 51 H 1.08995 * 110.03064 * 95.60933 * 28 27 26 52 52 H 1.09003 * 110.03400 * 216.98870 * 28 27 26 53 53 H 1.08993 * 110.03434 * 119.28355 * 29 28 27 54 54 H 1.08997 * 110.03167 * 240.66945 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8261 -1.1907 6 6 4.3342 0.2344 -1.7613 7 6 4.0850 -1.9156 -0.6026 8 1 3.5230 -2.8296 -0.4793 9 6 5.4005 -1.8453 -0.1647 10 7 5.9903 -0.6756 -0.0383 11 14 6.3334 -3.4110 0.2449 12 1 6.9259 -3.9730 -0.9953 13 1 7.4149 -3.1033 1.2150 14 1 5.4009 -4.4013 0.8409 15 7 2.0184 -0.6906 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8590 1.1585 2.4115 18 6 2.6490 -0.7290 3.5876 19 6 2.7011 0.2542 4.7587 20 1 3.3031 1.1192 4.4804 21 6 3.3269 -0.4330 5.9741 22 7 1.3427 0.6910 5.0904 23 6 1.1461 1.8769 5.7001 24 8 2.0938 2.5821 5.9745 25 6 -0.2513 2.3259 6.0418 26 6 -1.0800 2.5608 4.7504 27 6 -2.1762 3.5457 5.2273 28 6 -1.4455 4.4819 6.2120 29 6 -0.2216 3.7063 6.7298 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7196 -1.2953 34 1 1.7516 -0.1581 -2.1371 35 1 4.6151 0.9374 -0.9771 36 1 5.2329 -0.2040 -2.1952 37 1 3.7754 0.7589 -2.5363 38 1 6.9094 -0.6264 0.2681 39 1 2.2491 -1.6318 1.1525 40 1 3.6482 -1.1214 3.3984 41 1 1.9762 -1.5508 3.8324 42 1 3.3645 0.2677 6.8082 43 1 2.7249 -1.2980 6.2524 44 1 4.3376 -0.7579 5.7272 45 1 0.5847 0.1268 4.8713 46 1 -0.7414 1.5916 6.6809 47 1 -1.5240 1.6296 4.3985 48 1 -0.4647 3.0145 3.9735 49 1 -2.9773 3.0084 5.7350 50 1 -2.5726 4.1126 4.3849 51 1 -1.1236 5.3871 5.6974 52 1 -2.1042 4.7387 7.0417 53 1 0.6943 4.2352 6.4665 54 1 -0.2856 3.5867 7.8113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699478420.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:48 Heat of formation + Delta-G solvation = -98.324208 kcal Electronic energy + Delta-G solvation = -31594.653118 eV Core-core repulsion = 27565.145863 eV Total energy + Delta-G solvation = -4029.507254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31628 -40.46704 -38.37914 -37.90958 -36.62216 -35.57532 -33.28712 -32.76840 -31.62255 -29.83825 -29.52936 -28.70359 -28.03825 -27.34402 -24.16118 -23.51461 -22.39242 -21.53670 -21.33580 -21.07927 -20.53643 -18.75369 -18.42900 -17.83333 -17.35144 -16.98242 -16.73872 -16.57371 -15.91150 -15.82277 -15.54736 -15.25740 -15.02566 -14.87603 -14.48632 -14.45317 -14.29534 -13.92627 -13.86765 -13.49731 -13.38634 -13.10189 -12.98008 -12.85967 -12.83262 -12.72929 -12.67427 -12.49358 -12.18440 -12.15520 -12.07821 -11.98201 -11.96856 -11.92605 -11.91189 -11.69931 -11.64208 -11.30440 -10.70170 -10.63810 -10.56833 -10.00916 -9.70325 -8.77267 -7.74647 -5.20654 1.49567 1.53904 1.60257 1.72704 1.90368 2.29218 2.52926 2.57680 3.40528 3.54053 3.63147 3.71473 3.72756 3.83547 3.94669 4.19052 4.21016 4.26027 4.42561 4.46604 4.49503 4.53263 4.58657 4.60174 4.60655 4.62777 4.72137 4.76913 4.79077 4.80638 4.84509 4.94319 4.95807 5.03648 5.05801 5.08656 5.21343 5.22497 5.25380 5.27770 5.31664 5.37209 5.43924 5.47749 5.60524 5.67263 5.73027 5.88719 6.35678 6.63821 6.89970 7.18329 7.37000 7.57322 7.91961 8.38562 9.28922 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003204 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.037906 B = 8736.707341 C = 9990.984461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.123 3.877 3 H 0.030 0.970 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.244 4.244 8 H 0.085 0.915 9 C -0.050 4.050 10 N -0.937 5.937 11 Si 0.956 3.044 12 H -0.297 1.297 13 H -0.307 1.307 14 H -0.255 1.255 15 N -0.688 5.688 16 C 0.505 3.495 17 O -0.589 6.589 18 C -0.140 4.140 19 C 0.163 3.837 20 H 0.041 0.959 21 C -0.151 4.151 22 N -0.698 5.698 23 C 0.516 3.484 24 O -0.595 6.595 25 C -0.107 4.107 26 C -0.108 4.108 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.115 4.115 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.067 0.933 35 H -0.010 1.010 36 H 0.017 0.983 37 H 0.026 0.974 38 H 0.241 0.759 39 H 0.406 0.594 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.409 0.591 46 H 0.130 0.870 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.053 0.947 52 H 0.085 0.915 53 H 0.046 0.954 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.991 -1.735 10.763 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.049 0.951 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.033 3.967 7 C -0.374 4.374 8 H 0.103 0.897 9 C -0.245 4.245 10 N -0.584 5.584 11 Si 0.786 3.214 12 H -0.225 1.225 13 H -0.235 1.235 14 H -0.179 1.179 15 N -0.337 5.337 16 C 0.293 3.707 17 O -0.470 6.470 18 C -0.180 4.180 19 C 0.057 3.943 20 H 0.059 0.941 21 C -0.209 4.209 22 N -0.348 5.348 23 C 0.304 3.696 24 O -0.476 6.476 25 C -0.128 4.128 26 C -0.146 4.146 27 C -0.154 4.154 28 C -0.160 4.160 29 C -0.153 4.153 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.008 0.992 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.242 0.758 40 H 0.122 0.878 41 H 0.153 0.847 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.245 0.755 46 H 0.148 0.852 47 H 0.107 0.893 48 H 0.057 0.943 49 H 0.110 0.890 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.103 0.897 53 H 0.065 0.935 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.359 -0.412 10.983 21.397 hybrid contribution 1.585 -0.709 -0.204 1.748 sum -16.774 -1.121 10.779 19.970 Atomic orbital electron populations 1.21984 0.93654 1.02666 1.01823 1.21600 0.94132 0.95741 0.86992 0.95140 1.21382 0.83151 0.99456 0.94581 1.44138 1.00889 1.22016 1.66305 1.20470 0.92753 0.90076 0.93404 1.19456 0.95800 0.90628 1.31528 0.89732 1.25637 0.99749 0.98266 1.00844 1.70303 1.12316 1.23869 1.51909 0.85442 0.78663 0.80513 0.76788 1.22452 1.23470 1.17861 1.45755 1.65105 1.14308 1.08557 1.20915 0.77052 0.86990 0.85792 1.90656 1.52787 1.17480 1.86094 1.21980 1.05115 0.99597 0.91304 1.20466 0.84134 0.95832 0.93880 0.94100 1.22079 1.01589 1.00865 0.96382 1.45739 1.08789 1.20404 1.59889 1.21122 0.92057 0.80291 0.76141 1.90640 1.45674 1.55281 1.55985 1.22284 0.91027 0.99817 0.99626 1.22476 0.96530 1.00903 0.94714 1.22355 0.97300 0.96808 0.98929 1.22146 0.96172 0.98130 0.99535 1.22062 0.98816 0.94021 1.00369 0.93935 0.90815 0.90775 0.91090 0.91459 0.99184 0.96395 0.95588 0.94996 0.75801 0.87841 0.84735 0.93487 0.89415 0.91178 0.75474 0.85180 0.89314 0.94293 0.89027 0.91237 0.92829 0.89651 0.93516 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.48 71.98 0.68 -3.02 16 2 C 0.12 4.29 2.88 44.99 0.13 4.42 16 3 H 0.03 1.34 7.58 -2.38 -0.02 1.32 16 4 C 0.14 4.95 5.36 86.38 0.46 5.41 16 5 N -0.61 -27.96 2.82 -726.96 -2.05 -30.01 16 6 C 0.18 8.82 9.02 127.77 1.15 9.97 16 7 C -0.24 -11.70 8.02 84.04 0.67 -11.03 16 8 H 0.09 3.72 7.86 -2.91 -0.02 3.70 16 9 C -0.05 -2.58 5.06 84.86 0.43 -2.15 16 10 N -0.94 -54.04 10.67 21.65 0.23 -53.81 16 11 Si 0.96 41.86 29.58 68.60 2.03 43.88 16 12 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.31 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 15 N -0.69 -23.85 4.49 -442.54 -1.99 -25.83 16 16 C 0.51 18.28 7.66 87.66 0.67 18.95 16 17 O -0.59 -25.81 15.02 -3.03 -0.05 -25.85 16 18 C -0.14 -3.88 5.24 29.85 0.16 -3.73 16 19 C 0.16 4.87 2.14 44.99 0.10 4.96 16 20 H 0.04 1.68 7.39 -2.39 -0.02 1.66 16 21 C -0.15 -3.63 9.48 71.98 0.68 -2.94 16 22 N -0.70 -18.29 4.21 -442.53 -1.86 -20.15 16 23 C 0.52 15.61 7.10 87.66 0.62 16.24 16 24 O -0.59 -24.02 15.09 -3.04 -0.05 -24.06 16 25 C -0.11 -2.26 3.25 -10.34 -0.03 -2.29 16 26 C -0.11 -2.19 6.34 32.01 0.20 -1.99 16 27 C -0.12 -1.79 6.82 31.67 0.22 -1.57 16 28 C -0.12 -2.11 6.80 31.32 0.21 -1.89 16 29 C -0.11 -2.53 6.18 31.32 0.19 -2.34 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 34 H 0.07 2.15 7.86 -2.38 -0.02 2.13 16 35 H -0.01 -0.58 7.40 -2.39 -0.02 -0.60 16 36 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 37 H 0.03 1.10 7.83 -2.39 -0.02 1.08 16 38 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.41 13.37 7.40 -92.71 -0.69 12.68 16 40 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.41 8.03 8.60 -92.71 -0.80 7.23 16 46 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.09 8.06 -2.39 -0.02 1.08 16 49 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.05 1.39 6.85 -2.39 -0.02 1.37 16 54 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.29 426.55 2.21 -73.07 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.61 Total: 35.76 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: 6.55 Total: 27.00 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -5.67 Total: -129.80 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.09 Total: -49.92 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.29 2.21 -73.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699478420.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.252 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds