Wall clock time and date at job start Sat Apr 11 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34779 * 125.64795 * 181.12907 * 17 16 15 19 19 O 1.21278 * 119.99612 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00001 * 359.95901 * 18 17 16 21 21 C 1.53009 * 109.46866 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47137 * 180.02562 * 21 20 18 23 23 C 1.34775 * 119.99880 * 180.02562 * 22 21 20 24 24 O 1.21278 * 120.00003 * 0.02562 * 23 22 21 25 25 C 1.50707 * 119.99562 * 179.97438 * 23 22 21 26 26 C 1.53007 * 109.46452 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47472 * 299.99795 * 25 23 22 28 28 C 1.52994 * 109.47056 * 60.00547 * 25 23 22 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09000 * 109.90660 * 141.57633 * 16 15 13 39 39 H 1.08996 * 109.47295 * 299.99485 * 20 18 17 40 40 H 1.08996 * 109.47179 * 60.00598 * 20 18 17 41 41 H 1.09004 * 109.47023 * 300.00403 * 21 20 18 42 42 H 1.09000 * 109.46541 * 59.99853 * 21 20 18 43 43 H 0.97004 * 120.00219 * 0.02562 * 22 21 20 44 44 H 1.09000 * 109.47373 * 60.00347 * 26 25 23 45 45 H 1.09005 * 109.46300 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47400 * 299.99826 * 26 25 23 47 47 H 1.09004 * 109.46684 * 60.00355 * 27 25 23 48 48 H 1.08997 * 109.46930 * 180.02562 * 27 25 23 49 49 H 1.09004 * 109.46978 * 300.00626 * 27 25 23 50 50 H 1.09000 * 109.47607 * 59.99678 * 28 25 23 51 51 H 1.09005 * 109.47462 * 179.97438 * 28 25 23 52 52 H 1.09004 * 109.47050 * 299.99615 * 28 25 23 53 53 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 54 54 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4212 -0.3478 -4.8832 19 8 1.3549 0.0036 -5.3419 20 6 3.5357 -0.7701 -5.8054 21 6 3.0640 -0.6648 -7.2571 22 7 4.1472 -1.0760 -8.1536 23 6 3.9588 -1.0636 -9.4881 24 8 2.8927 -0.7117 -9.9467 25 6 5.0734 -1.4860 -10.4103 26 6 4.6015 -1.3808 -11.8620 27 6 6.2833 -0.5736 -10.1994 28 6 5.4664 -2.9329 -10.1059 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6625 -0.1012 -3.1516 39 1 4.3977 -0.1201 -5.6551 40 1 3.8157 -1.8010 -5.5887 41 1 2.2021 -1.3151 -7.4072 42 1 2.7836 0.3659 -7.4741 43 1 5.0001 -1.3571 -7.7868 44 1 4.3212 -0.3501 -12.0792 45 1 5.4076 -1.6868 -12.5290 46 1 3.7397 -2.0311 -12.0120 47 1 6.6193 -0.6490 -9.1652 48 1 7.0892 -0.8789 -10.8667 49 1 6.0032 0.4573 -10.4162 50 1 4.6044 -3.5829 -10.2563 51 1 6.2723 -3.2387 -10.7733 52 1 5.8023 -3.0083 -9.0717 53 1 0.6144 -0.2928 -2.8452 54 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699945848.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:55 Heat of formation + Delta-G solvation = -106.759269 kcal Electronic energy + Delta-G solvation = -29497.204295 eV Core-core repulsion = 25467.331269 eV Total energy + Delta-G solvation = -4029.873026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40217 -40.99857 -39.15234 -36.80914 -36.64961 -36.28929 -34.26210 -32.43599 -31.42230 -30.76566 -28.83792 -28.18494 -28.04105 -26.47788 -25.63106 -24.11576 -23.01117 -22.76082 -21.08462 -20.79733 -19.83083 -19.12317 -18.26901 -17.75869 -17.52819 -16.99760 -16.86168 -16.39851 -16.18279 -15.66428 -15.51497 -15.20058 -15.06951 -14.75824 -14.67865 -14.56194 -14.21465 -14.02145 -13.84946 -13.68669 -13.40622 -13.29452 -13.19362 -13.04108 -12.99417 -12.86593 -12.82928 -12.74811 -12.60516 -12.51605 -12.29295 -12.21335 -11.95141 -11.89031 -11.83285 -11.63453 -11.53643 -11.36419 -11.06824 -10.89246 -10.70912 -10.17771 -9.66937 -8.96157 -7.89781 -5.16520 1.50106 1.51523 1.56650 1.57418 1.61347 1.76131 2.31134 2.59323 3.38299 3.44494 3.59107 3.67858 3.70994 3.83774 3.86969 3.91577 3.94165 4.04016 4.26221 4.28980 4.35541 4.39561 4.46126 4.53966 4.61835 4.71232 4.72397 4.74930 4.79291 4.80900 4.84758 4.89338 4.91813 4.97201 4.98090 5.00481 5.03482 5.07229 5.18215 5.23855 5.24734 5.34536 5.35968 5.37036 5.38840 5.39998 5.56113 5.61117 6.32367 6.48236 6.54838 7.08238 7.24247 7.39649 8.15517 8.39510 9.33123 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.001669 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.304263 B =16768.928349 C =17368.734052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.046 0.954 4 N -0.729 5.729 5 C -0.234 4.234 6 H 0.072 0.928 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.115 4.115 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.524 3.476 19 O -0.591 6.591 20 C -0.132 4.132 21 C 0.140 3.860 22 N -0.712 5.712 23 C 0.513 3.487 24 O -0.591 6.591 25 C -0.082 4.082 26 C -0.130 4.130 27 C -0.138 4.138 28 C -0.139 4.139 29 C 0.118 3.882 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.419 0.581 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.048 0.952 51 H 0.088 0.912 52 H 0.078 0.922 53 H 0.066 0.934 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.370 -0.973 -27.036 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.065 0.935 4 N -0.369 5.369 5 C -0.366 4.366 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.795 3.205 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.204 1.204 13 C -0.114 4.114 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.348 5.348 18 C 0.314 3.686 19 O -0.472 6.472 20 C -0.171 4.171 21 C 0.015 3.985 22 N -0.365 5.365 23 C 0.301 3.699 24 O -0.470 6.470 25 C -0.085 4.085 26 C -0.187 4.187 27 C -0.196 4.196 28 C -0.196 4.196 29 C -0.005 4.005 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.107 0.893 52 H 0.097 0.903 53 H 0.084 0.916 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.068 -0.389 -27.539 29.682 hybrid contribution -0.290 0.024 1.564 1.590 sum 10.778 -0.366 -25.975 28.125 Atomic orbital electron populations 1.22376 0.98484 1.00723 1.00460 1.20300 0.92166 0.94959 0.85275 0.93548 1.42479 1.78307 1.10253 1.05855 1.19521 1.34599 0.94054 0.88412 0.90997 1.25414 1.03263 0.96801 1.00976 1.69787 1.52708 1.09970 1.29281 0.85339 0.77723 0.77429 0.80025 1.21032 1.22427 1.20443 1.22437 0.96580 0.99490 0.92864 0.90668 1.22516 0.94742 1.03228 0.94778 1.22307 0.86088 1.02094 0.91334 1.48632 1.16046 1.65333 1.04818 1.20693 0.89291 0.77091 0.81478 1.90734 1.29848 1.50561 1.76064 1.21736 0.97533 1.06729 0.91141 1.20779 0.89704 0.99956 0.88030 1.45808 1.17334 1.67905 1.05501 1.21357 0.89168 0.76084 0.83268 1.90704 1.29809 1.49408 1.77126 1.20876 0.93880 0.99118 0.94652 1.21694 1.01463 1.01690 0.93897 1.21897 0.95616 0.98015 1.04052 1.21901 1.02256 0.91667 1.03797 1.22125 0.92497 0.99189 0.86694 0.94009 0.94563 0.91739 0.79423 0.94211 0.91182 0.90397 0.88895 0.88473 0.84821 0.85025 0.93282 0.93139 0.74275 0.93652 0.89440 0.93701 0.90258 0.89331 0.93270 0.93325 0.89322 0.90276 0.91583 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 9.31 71.98 0.67 -4.89 16 2 C 0.18 6.57 2.40 44.99 0.11 6.68 16 3 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 4 N -0.73 -33.98 4.90 -322.94 -1.58 -35.56 16 5 C -0.23 -12.34 9.93 84.03 0.83 -11.50 16 6 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.97 -56.74 13.06 21.65 0.28 -56.46 16 9 Si 0.96 44.84 29.55 68.60 2.03 46.86 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C -0.09 -2.69 2.63 -9.40 -0.02 -2.71 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -2.82 6.21 31.80 0.20 -2.63 16 16 C 0.10 1.70 6.49 86.74 0.56 2.26 16 17 N -0.62 -13.58 3.33 -811.70 -2.70 -16.28 16 18 C 0.52 12.20 7.85 87.66 0.69 12.89 16 19 O -0.59 -19.71 16.24 -3.02 -0.05 -19.76 16 20 C -0.13 -1.65 5.01 29.85 0.15 -1.50 16 21 C 0.14 2.61 4.96 86.38 0.43 3.04 16 22 N -0.71 -9.32 5.34 -463.05 -2.47 -11.80 16 23 C 0.51 9.65 6.48 87.66 0.57 10.22 16 24 O -0.59 -17.73 15.98 -3.02 -0.05 -17.78 16 25 C -0.08 -0.90 0.87 -52.93 -0.05 -0.94 16 26 C -0.13 -1.72 7.76 71.98 0.56 -1.17 16 27 C -0.14 -0.84 8.37 71.98 0.60 -0.24 16 28 C -0.14 -0.87 8.37 71.98 0.60 -0.27 16 29 C 0.12 3.12 5.42 86.86 0.47 3.59 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.87 7.33 -2.39 -0.02 1.86 16 33 H 0.37 18.73 7.80 -92.71 -0.72 18.01 16 34 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 35 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.20 8.10 -2.38 -0.02 1.18 16 42 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.42 1.98 7.31 -92.71 -0.68 1.31 16 44 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 45 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 47 H 0.08 0.19 7.57 -2.38 -0.02 0.17 16 48 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 50 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 52 H 0.08 0.21 7.56 -2.38 -0.02 0.19 16 53 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16 54 H 0.07 1.84 8.03 -2.39 -0.02 1.82 16 Total: -1.00 -77.61 431.31 1.76 -75.85 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.53 Total: 25.60 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.84 Total: 9.32 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.47 Total: -120.10 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -77.61 1.76 -75.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699945848.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.911 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds