Wall clock time and date at job start Sat Apr 11 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46997 * 2 1 4 4 N 1.46500 * 109.47387 * 239.99974 * 2 1 3 5 5 C 1.34778 * 119.99977 * 84.99538 * 4 2 1 6 6 O 1.21277 * 119.99786 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99860 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.46920 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47028 * 299.99889 * 7 5 4 10 10 C 1.52995 * 109.47335 * 59.99771 * 7 5 4 11 11 C 1.50703 * 109.47354 * 119.99805 * 2 1 3 12 12 O 1.21276 * 119.99879 * 93.33633 * 11 2 1 13 13 N 1.34779 * 119.99850 * 273.34473 * 11 2 1 14 14 C 1.47023 * 125.64434 * 184.94874 * 13 11 2 15 15 C 1.54327 * 107.27009 * 178.90415 * 14 13 11 16 16 C 1.55164 * 102.94083 * 337.80508 * 15 14 13 17 17 H 1.08997 * 111.00209 * 277.39102 * 16 15 14 18 18 C 1.53000 * 111.00220 * 153.57738 * 16 15 14 19 19 N 1.46498 * 109.47274 * 69.58261 * 18 16 15 20 20 C 1.46499 * 119.99737 * 270.00077 * 19 18 16 21 21 C 1.36930 * 120.00121 * 89.99769 * 19 18 16 22 22 H 1.08007 * 119.99879 * 339.60368 * 21 19 18 23 23 C 1.38812 * 119.99925 * 159.60351 * 21 19 18 24 24 N 1.31614 * 120.00311 * 326.98322 * 23 21 19 25 25 Si 1.86804 * 119.99637 * 146.71137 * 23 21 19 26 26 H 1.48506 * 109.46645 * 180.27512 * 25 23 21 27 27 H 1.48497 * 109.47312 * 300.26926 * 25 23 21 28 28 H 1.48495 * 109.47610 * 60.27458 * 25 23 21 29 29 C 1.47463 * 125.63003 * 4.86349 * 13 11 2 30 30 H 1.09006 * 109.46700 * 184.37072 * 1 2 3 31 31 H 1.09003 * 109.47113 * 304.36996 * 1 2 3 32 32 H 1.08992 * 109.47297 * 64.37105 * 1 2 3 33 33 H 0.97004 * 119.99668 * 264.99959 * 4 2 1 34 34 H 1.08991 * 109.47230 * 59.99934 * 8 7 5 35 35 H 1.08999 * 109.46881 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46822 * 299.99351 * 8 7 5 37 37 H 1.09001 * 109.46915 * 60.00480 * 9 7 5 38 38 H 1.09003 * 109.47404 * 180.02562 * 9 7 5 39 39 H 1.09000 * 109.47317 * 300.00552 * 9 7 5 40 40 H 1.09002 * 109.47177 * 60.00178 * 10 7 5 41 41 H 1.08999 * 109.47431 * 179.97438 * 10 7 5 42 42 H 1.09001 * 109.47607 * 300.00132 * 10 7 5 43 43 H 1.09000 * 109.88407 * 59.48572 * 14 13 11 44 44 H 1.09002 * 110.00779 * 298.39107 * 14 13 11 45 45 H 1.08999 * 110.71852 * 219.44134 * 15 14 13 46 46 H 1.08998 * 110.87060 * 96.23869 * 15 14 13 47 47 H 1.08998 * 109.46884 * 309.57566 * 18 16 15 48 48 H 1.08998 * 109.46885 * 189.58055 * 18 16 15 49 49 H 1.09008 * 109.46806 * 273.95987 * 20 19 18 50 50 H 1.08998 * 109.47415 * 33.96164 * 20 19 18 51 51 H 1.09001 * 109.47406 * 153.96741 * 20 19 18 52 52 H 0.97007 * 119.99511 * 353.42352 * 24 23 21 53 53 H 1.08996 * 110.35271 * 85.32333 * 29 13 11 54 54 H 1.09000 * 110.40287 * 322.98494 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7288 -3.5877 8 6 2.7010 0.2545 -4.7587 9 6 4.0514 -1.2797 -3.3222 10 6 1.7045 -1.8824 -3.9313 11 6 2.0324 -0.7104 1.2305 12 8 2.2922 -1.8941 1.1837 13 7 2.1929 -0.0302 2.3830 14 6 2.7682 -0.5701 3.6235 15 6 2.7755 0.5727 4.6605 16 6 2.7268 1.8459 3.7749 17 1 3.7215 2.1107 3.4164 18 6 2.0898 3.0146 4.5293 19 7 2.9911 3.4565 5.5964 20 6 2.8932 2.8610 6.9313 21 6 3.9252 4.4259 5.3460 22 1 4.2308 4.6320 4.3307 23 6 4.4792 5.1439 6.3969 24 7 3.7570 5.4111 7.4643 25 14 6.2520 5.7244 6.2993 26 1 6.6019 6.4575 7.5425 27 1 7.1495 4.5511 6.1475 28 1 6.4141 6.6261 5.1307 29 6 1.8218 1.3792 2.6074 30 1 -0.3633 -1.0248 0.0783 31 1 -0.3633 0.5802 0.8483 32 1 -0.3633 0.4445 -0.9265 33 1 2.2491 -1.6318 -1.1525 34 1 3.3741 1.0760 -4.5137 35 1 3.0636 -0.2596 -5.6489 36 1 1.7020 0.6472 -4.9480 37 1 4.0147 -1.9801 -2.4878 38 1 4.4146 -1.7933 -4.2124 39 1 4.7242 -0.4579 -3.0773 40 1 0.7054 -1.4900 -4.1205 41 1 2.0673 -2.3961 -4.8216 42 1 1.6678 -2.5829 -3.0969 43 1 3.7871 -0.9121 3.4415 44 1 2.1592 -1.3975 3.9879 45 1 3.6901 0.5499 5.2531 46 1 1.8984 0.5177 5.3053 47 1 1.1427 2.6939 4.9632 48 1 1.9124 3.8392 3.8389 49 1 2.1399 3.3933 7.5122 50 1 2.6089 1.8126 6.8415 51 1 3.8578 2.9342 7.4335 52 1 2.8124 5.1910 7.4783 53 1 0.7714 1.4546 2.8882 54 1 2.0199 1.9713 1.7139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714901444.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:54 Heat of formation + Delta-G solvation = -84.587516 kcal Electronic energy + Delta-G solvation = -30810.118252 eV Core-core repulsion = 26781.206665 eV Total energy + Delta-G solvation = -4028.911586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.84620 -40.87958 -39.17111 -37.36913 -36.75272 -36.15726 -34.06972 -32.50519 -31.45633 -30.44834 -28.26368 -28.09174 -28.06663 -26.97898 -26.12141 -24.53051 -23.24593 -22.65158 -21.33228 -20.94399 -20.24462 -19.22602 -18.41584 -18.01200 -17.28279 -17.13199 -16.60618 -16.24191 -16.14422 -15.89423 -15.50124 -15.39268 -15.06119 -14.87794 -14.77896 -14.60752 -14.51333 -14.22758 -13.92538 -13.55363 -13.44765 -13.33152 -13.23288 -13.10864 -13.06777 -12.91978 -12.84290 -12.70863 -12.65850 -12.62671 -12.46346 -12.16116 -11.94125 -11.91255 -11.89871 -11.74132 -11.56971 -11.44313 -11.13345 -10.80454 -10.37215 -10.32219 -9.82277 -8.96558 -8.25609 -5.28506 1.23962 1.52233 1.58870 1.62162 1.64639 1.83728 2.21123 2.66714 3.11660 3.19294 3.42345 3.52341 3.70861 3.78162 3.83402 3.86522 3.92544 3.94755 4.01150 4.22886 4.23818 4.32729 4.49857 4.55161 4.57186 4.65560 4.67626 4.68467 4.69561 4.74558 4.79735 4.80014 4.87817 4.91591 4.92511 4.94712 4.98071 5.04343 5.10382 5.12103 5.17955 5.19138 5.22050 5.24805 5.29500 5.34763 5.41773 5.86419 6.29003 6.37650 6.40888 6.83166 7.07721 7.09375 7.83328 8.20955 9.00273 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.002387 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.632476 B =11727.325630 C =12596.842596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.101 0.899 4 N -0.709 5.709 5 C 0.521 3.479 6 O -0.575 6.575 7 C -0.082 4.082 8 C -0.126 4.126 9 C -0.141 4.141 10 C -0.138 4.138 11 C 0.529 3.471 12 O -0.568 6.568 13 N -0.608 5.608 14 C 0.113 3.887 15 C -0.110 4.110 16 C -0.109 4.109 17 H 0.059 0.941 18 C 0.162 3.838 19 N -0.617 5.617 20 C 0.144 3.856 21 C -0.359 4.359 22 H 0.051 0.949 23 C -0.071 4.071 24 N -0.935 5.935 25 Si 1.099 2.901 26 H -0.294 1.294 27 H -0.284 1.284 28 H -0.278 1.278 29 C 0.106 3.894 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.043 0.957 49 H -0.009 1.009 50 H 0.057 0.943 51 H 0.022 0.978 52 H 0.256 0.744 53 H 0.096 0.904 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -17.721 -20.920 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.119 0.881 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.454 6.454 7 C -0.085 4.085 8 C -0.184 4.184 9 C -0.198 4.198 10 C -0.195 4.195 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.341 5.341 14 C -0.009 4.009 15 C -0.148 4.148 16 C -0.130 4.130 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.341 5.341 20 C -0.001 4.001 21 C -0.488 4.488 22 H 0.069 0.931 23 C -0.269 4.269 24 N -0.576 5.576 25 Si 0.925 3.075 26 H -0.221 1.221 27 H -0.211 1.211 28 H -0.204 1.204 29 C -0.017 4.017 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.252 0.748 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.009 0.991 50 H 0.075 0.925 51 H 0.041 0.959 52 H 0.065 0.935 53 H 0.114 0.886 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.740 -16.796 -20.184 26.683 hybrid contribution -0.972 -0.621 -0.296 1.191 sum -5.713 -17.417 -20.479 27.485 Atomic orbital electron populations 1.22017 0.90972 1.03580 1.04099 1.20749 0.97138 0.97232 0.82850 0.88121 1.45855 1.67198 1.14978 1.08251 1.21283 0.76037 0.86730 0.84996 1.90689 1.51500 1.17637 1.85569 1.20877 0.98219 0.97466 0.91965 1.21673 1.02213 0.97961 0.96531 1.21904 0.93110 1.01033 1.03778 1.21885 0.98220 0.95871 1.03553 1.20415 0.77407 0.86559 0.83927 1.90662 1.53212 1.16107 1.84829 1.48539 1.60722 1.13550 1.11268 1.21972 0.98395 0.97078 0.83495 1.22571 1.03155 0.92460 0.96587 1.22842 0.99129 0.96124 0.94943 0.92202 1.20744 0.91559 0.94236 0.89855 1.44100 1.39677 1.42407 1.07878 1.20863 0.98018 0.95162 0.86050 1.20061 1.18471 1.15433 0.94854 0.93066 1.26804 1.08216 0.97050 0.94804 1.70911 1.08048 1.44400 1.34252 0.83065 0.72818 0.76047 0.75574 1.22052 1.21058 1.20446 1.22549 1.00125 0.80050 0.98989 0.91237 0.89652 0.91013 0.74809 0.93513 0.89385 0.92909 0.91780 0.88881 0.93226 0.92406 0.89079 0.91507 0.92198 0.90523 0.91009 0.89737 0.92340 0.93821 0.99084 0.92487 0.95932 0.93467 0.88587 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.47 71.98 0.68 -1.97 16 2 C 0.13 2.80 2.46 44.25 0.11 2.91 16 3 H 0.10 2.42 6.13 -2.39 -0.01 2.40 16 4 N -0.71 -14.39 4.84 -446.10 -2.16 -16.55 16 5 C 0.52 11.37 6.45 87.66 0.56 11.93 16 6 O -0.58 -16.88 15.64 -3.02 -0.05 -16.93 16 7 C -0.08 -1.21 0.87 -52.93 -0.05 -1.26 16 8 C -0.13 -1.89 7.76 71.98 0.56 -1.33 16 9 C -0.14 -1.73 8.37 71.98 0.60 -1.13 16 10 C -0.14 -1.39 8.37 71.98 0.60 -0.79 16 11 C 0.53 13.26 7.04 87.66 0.62 13.88 16 12 O -0.57 -16.81 16.37 -3.02 -0.05 -16.86 16 13 N -0.61 -14.83 3.33 -811.68 -2.70 -17.53 16 14 C 0.11 2.76 6.87 86.73 0.60 3.36 16 15 C -0.11 -2.89 4.93 31.79 0.16 -2.73 16 16 C -0.11 -3.22 3.27 -9.40 -0.03 -3.25 16 17 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 18 C 0.16 5.80 5.19 86.38 0.45 6.25 16 19 N -0.62 -28.73 2.78 -726.94 -2.02 -30.75 16 20 C 0.14 6.45 8.79 127.77 1.12 7.58 16 21 C -0.36 -19.32 9.45 84.03 0.79 -18.53 16 22 H 0.05 2.79 8.01 -2.91 -0.02 2.77 16 23 C -0.07 -3.97 4.51 84.86 0.38 -3.59 16 24 N -0.93 -55.97 12.63 21.65 0.27 -55.70 16 25 Si 1.10 50.61 30.03 68.60 2.06 52.67 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 29 C 0.11 2.42 6.21 86.85 0.54 2.96 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.41 7.59 6.64 -92.71 -0.62 6.97 16 34 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.06 0.77 7.56 -2.39 -0.02 0.75 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.62 7.57 -2.39 -0.02 0.60 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 46 H 0.08 2.05 7.42 -2.39 -0.02 2.03 16 47 H 0.06 1.85 7.97 -2.39 -0.02 1.83 16 48 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 49 H -0.01 -0.42 7.06 -2.38 -0.02 -0.44 16 50 H 0.06 2.06 6.14 -2.39 -0.01 2.04 16 51 H 0.02 1.11 7.08 -2.39 -0.02 1.10 16 52 H 0.26 15.52 6.66 -92.70 -0.62 14.90 16 53 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 54 H 0.08 1.85 6.75 -2.39 -0.02 1.83 16 Total: -1.00 -70.52 421.84 3.46 -67.06 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.40 Total: 20.30 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.70 Total: 14.30 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.60 Total: -120.54 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.10 Total: -33.79 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.06 Total: 52.67 kcal Total: -70.52 3.46 -67.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714901444.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.526 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds