Wall clock time and date at job start Sat Apr 11 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 N 1.46509 * 109.46945 * 240.00634 * 2 1 3 5 5 C 1.34775 * 119.99901 * 85.00095 * 4 2 1 6 6 O 1.21274 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99682 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46794 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46988 * 299.99653 * 7 5 4 10 10 C 1.52998 * 109.47367 * 59.99976 * 7 5 4 11 11 C 1.50694 * 109.47226 * 120.00956 * 2 1 3 12 12 O 1.21283 * 120.00541 * 93.12905 * 11 2 1 13 13 N 1.34781 * 119.99630 * 273.12635 * 11 2 1 14 14 C 1.47025 * 125.64870 * 5.20515 * 13 11 2 15 15 C 1.54326 * 107.27045 * 181.02244 * 14 13 11 16 16 C 1.55160 * 102.94108 * 22.19263 * 15 14 13 17 17 H 1.08994 * 111.00660 * 82.57493 * 16 15 14 18 18 C 1.53000 * 111.00067 * 206.38501 * 16 15 14 19 19 N 1.46500 * 109.47392 * 293.54512 * 18 16 15 20 20 C 1.46498 * 119.99553 * 90.00016 * 19 18 16 21 21 C 1.36929 * 120.00001 * 270.00272 * 19 18 16 22 22 H 1.08002 * 120.00231 * 143.53510 * 21 19 18 23 23 C 1.38812 * 120.00032 * 323.53380 * 21 19 18 24 24 N 1.31624 * 119.99861 * 158.96322 * 23 21 19 25 25 Si 1.86804 * 120.00027 * 338.95512 * 23 21 19 26 26 H 1.48504 * 109.46450 * 95.10422 * 25 23 21 27 27 H 1.48498 * 109.47125 * 215.09851 * 25 23 21 28 28 H 1.48499 * 109.47196 * 335.10491 * 25 23 21 29 29 C 1.47430 * 125.64721 * 184.89331 * 13 11 2 30 30 H 1.08997 * 109.46848 * 175.08001 * 1 2 3 31 31 H 1.08995 * 109.46812 * 295.07935 * 1 2 3 32 32 H 1.08994 * 109.46925 * 55.08055 * 1 2 3 33 33 H 0.96997 * 119.99631 * 265.00390 * 4 2 1 34 34 H 1.08992 * 109.47234 * 59.99951 * 8 7 5 35 35 H 1.08998 * 109.46893 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46932 * 299.99303 * 8 7 5 37 37 H 1.09000 * 109.46837 * 60.00233 * 9 7 5 38 38 H 1.08998 * 109.46854 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.46644 * 300.00096 * 9 7 5 40 40 H 1.09002 * 109.46958 * 59.99659 * 10 7 5 41 41 H 1.08993 * 109.46889 * 180.02562 * 10 7 5 42 42 H 1.09009 * 109.46832 * 300.00053 * 10 7 5 43 43 H 1.08999 * 109.87638 * 300.43726 * 14 13 11 44 44 H 1.08991 * 109.88226 * 61.60186 * 14 13 11 45 45 H 1.09002 * 110.71842 * 140.55322 * 15 14 13 46 46 H 1.09002 * 110.71846 * 263.65303 * 15 14 13 47 47 H 1.09001 * 109.47196 * 53.54633 * 18 16 15 48 48 H 1.09002 * 109.46982 * 173.54282 * 18 16 15 49 49 H 1.09005 * 109.47192 * 86.21926 * 20 19 18 50 50 H 1.08998 * 109.46698 * 206.21267 * 20 19 18 51 51 H 1.08996 * 109.47596 * 326.21794 * 20 19 18 52 52 H 0.96996 * 119.99400 * 180.02562 * 24 23 21 53 53 H 1.08996 * 110.37039 * 274.74578 * 29 13 11 54 54 H 1.09006 * 110.36358 * 37.07587 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0180 -2.3572 6 8 1.8582 1.1586 -2.4117 7 6 2.6488 -0.7285 -3.5879 8 6 2.7010 0.2550 -4.7588 9 6 4.0513 -1.2795 -3.3225 10 6 1.7042 -1.8820 -3.9317 11 6 2.0324 -0.7106 1.2303 12 8 2.2886 -1.8951 1.1844 13 7 2.1970 -0.0296 2.3817 14 6 1.8255 1.3749 2.6072 15 6 2.2221 1.7267 4.0566 16 6 3.3095 0.6699 4.3855 17 1 4.2820 0.9774 4.0015 18 6 3.3770 0.4028 5.8905 19 7 3.8522 1.6054 6.5791 20 6 2.8927 2.6081 7.0483 21 6 5.1931 1.7922 6.7841 22 1 5.6161 2.7839 6.7206 23 6 6.0088 0.7070 7.0736 24 7 7.3063 0.7854 6.8670 25 14 5.2650 -0.8646 7.7564 26 1 5.0034 -1.8125 6.6436 27 1 6.2111 -1.4819 8.7203 28 1 3.9893 -0.5488 8.4480 29 6 2.7734 -0.5718 3.6257 30 1 -0.3633 -1.0239 -0.0881 31 1 -0.3633 0.4356 0.9308 32 1 -0.3633 0.5882 -0.8426 33 1 2.2490 -1.6317 -1.1528 34 1 3.3741 1.0764 -4.5137 35 1 3.0635 -0.2590 -5.6491 36 1 1.7021 0.6479 -4.9481 37 1 4.0145 -1.9800 -2.4882 38 1 4.4144 -1.7930 -4.2128 39 1 4.7241 -0.4577 -3.0776 40 1 0.7051 -1.4893 -4.1207 41 1 2.0674 -2.3960 -4.8215 42 1 1.6675 -2.5825 -3.0973 43 1 2.3631 2.0170 1.9095 44 1 0.7507 1.4997 2.4763 45 1 2.6349 2.7342 4.1097 46 1 1.3674 1.6258 4.7255 47 1 2.3845 0.1419 6.2581 48 1 4.0639 -0.4213 6.0828 49 1 2.5341 2.3318 8.0399 50 1 3.3795 3.5822 7.0965 51 1 2.0506 2.6564 6.3579 52 1 7.8762 0.0269 7.0689 53 1 2.0049 -1.0756 4.2119 54 1 3.5892 -1.2580 3.3981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714901446.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:58 Heat of formation + Delta-G solvation = -78.468880 kcal Electronic energy + Delta-G solvation = -31004.476280 eV Core-core repulsion = 26975.830018 eV Total energy + Delta-G solvation = -4028.646263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.82761 -40.87231 -39.19472 -37.25422 -36.74711 -36.14087 -33.98498 -32.97141 -31.49512 -30.58551 -28.27226 -28.19544 -28.06347 -27.45142 -25.84717 -24.42537 -23.11010 -22.91643 -21.52194 -20.92800 -20.22096 -18.73724 -18.44038 -17.81769 -17.54389 -17.28862 -16.88059 -16.38316 -16.08914 -16.04795 -15.41617 -15.20645 -15.12036 -14.83327 -14.82668 -14.58834 -14.53185 -14.12043 -13.96030 -13.89157 -13.48455 -13.38562 -13.32510 -13.26011 -13.11350 -12.98521 -12.90310 -12.73079 -12.68605 -12.65741 -12.48846 -12.40870 -11.94068 -11.93307 -11.89793 -11.80993 -11.57922 -11.27138 -11.10528 -10.79496 -10.63138 -10.31258 -9.79262 -8.76913 -8.20023 -5.57104 1.24843 1.28851 1.39932 1.50073 1.53172 1.64451 2.22549 2.40474 3.01863 3.18675 3.39152 3.53356 3.64735 3.79006 3.84209 3.86764 3.93426 3.96780 4.03474 4.23474 4.25437 4.34662 4.44607 4.54145 4.57622 4.66659 4.67935 4.69570 4.71407 4.76713 4.79741 4.81743 4.86417 4.91200 4.92650 4.98168 5.00350 5.08272 5.09817 5.13177 5.18763 5.19125 5.23923 5.25571 5.28977 5.35098 5.43216 5.94017 6.16253 6.34293 6.37621 6.85369 6.99320 7.08975 7.64383 8.04493 8.99972 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002496 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.022310 B =11217.266140 C =11665.179496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.105 0.895 4 N -0.711 5.711 5 C 0.523 3.477 6 O -0.573 6.573 7 C -0.083 4.083 8 C -0.125 4.125 9 C -0.142 4.142 10 C -0.138 4.138 11 C 0.524 3.476 12 O -0.573 6.573 13 N -0.609 5.609 14 C 0.096 3.904 15 C -0.108 4.108 16 C -0.110 4.110 17 H 0.053 0.947 18 C 0.145 3.855 19 N -0.621 5.621 20 C 0.120 3.880 21 C -0.252 4.252 22 H 0.043 0.957 23 C -0.026 4.026 24 N -0.953 5.953 25 Si 0.944 3.056 26 H -0.275 1.275 27 H -0.313 1.313 28 H -0.255 1.255 29 C 0.113 3.887 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.027 0.973 49 H 0.012 0.988 50 H 0.038 0.962 51 H 0.071 0.929 52 H 0.261 0.739 53 H 0.084 0.916 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.563 -3.858 -20.592 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 H 0.123 0.877 4 N -0.365 5.365 5 C 0.311 3.689 6 O -0.452 6.452 7 C -0.086 4.086 8 C -0.183 4.183 9 C -0.199 4.199 10 C -0.195 4.195 11 C 0.312 3.688 12 O -0.453 6.453 13 N -0.342 5.342 14 C -0.026 4.026 15 C -0.145 4.145 16 C -0.131 4.131 17 H 0.072 0.928 18 C 0.019 3.981 19 N -0.346 5.346 20 C -0.024 4.024 21 C -0.383 4.383 22 H 0.061 0.939 23 C -0.221 4.221 24 N -0.597 5.597 25 Si 0.773 3.227 26 H -0.203 1.203 27 H -0.243 1.243 28 H -0.179 1.179 29 C -0.010 4.010 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.045 0.955 49 H 0.031 0.969 50 H 0.057 0.943 51 H 0.090 0.910 52 H 0.070 0.930 53 H 0.102 0.898 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.537 -3.702 -20.665 27.355 hybrid contribution 0.907 -1.027 0.814 1.594 sum -16.630 -4.729 -19.851 26.325 Atomic orbital electron populations 1.22024 0.90685 1.03584 1.04293 1.20748 0.97274 0.97183 0.82395 0.87739 1.45899 1.67199 1.14984 1.08389 1.21226 0.76018 0.86739 0.84917 1.90669 1.51512 1.17448 1.85567 1.20878 0.98004 0.97528 0.92152 1.21665 1.02311 0.97901 0.96396 1.21910 0.93356 1.01018 1.03663 1.21883 0.98305 0.95880 1.03459 1.20592 0.77420 0.86640 0.84099 1.90673 1.53270 1.16480 1.84890 1.48560 1.60606 1.14004 1.11010 1.22401 1.01961 0.80198 0.98014 1.22615 0.98155 0.99224 0.94527 1.22821 0.98634 0.94872 0.96811 0.92833 1.21133 0.98000 0.88857 0.90076 1.44118 1.02612 1.22781 1.65049 1.21298 0.92450 0.91544 0.97102 1.18709 0.83508 0.94146 1.41893 0.93941 1.26066 0.95162 1.01728 0.99188 1.69989 1.05660 1.32839 1.51262 0.85862 0.78222 0.80421 0.78163 1.20284 1.24254 1.17925 1.22285 0.97612 0.96506 0.84618 0.91417 0.89387 0.90689 0.74951 0.93445 0.89503 0.92690 0.92062 0.88936 0.93227 0.92179 0.89176 0.91707 0.90792 0.87853 0.89871 0.88568 0.90619 0.95513 0.96949 0.94320 0.91009 0.93008 0.89799 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.47 71.98 0.68 -1.79 16 2 C 0.13 2.87 2.46 44.24 0.11 2.98 16 3 H 0.10 2.39 6.64 -2.39 -0.02 2.37 16 4 N -0.71 -14.94 4.84 -446.09 -2.16 -17.10 16 5 C 0.52 11.46 6.45 87.66 0.56 12.02 16 6 O -0.57 -16.32 15.64 -3.01 -0.05 -16.36 16 7 C -0.08 -1.26 0.87 -52.92 -0.05 -1.31 16 8 C -0.13 -1.87 7.76 71.98 0.56 -1.32 16 9 C -0.14 -1.96 8.37 71.98 0.60 -1.36 16 10 C -0.14 -1.49 8.37 71.98 0.60 -0.88 16 11 C 0.52 14.06 7.04 87.65 0.62 14.68 16 12 O -0.57 -18.83 16.33 -3.04 -0.05 -18.88 16 13 N -0.61 -15.85 3.33 -811.34 -2.70 -18.55 16 14 C 0.10 1.93 6.30 86.73 0.55 2.48 16 15 C -0.11 -2.54 4.88 31.78 0.16 -2.38 16 16 C -0.11 -3.62 3.31 -9.32 -0.03 -3.65 16 17 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 18 C 0.14 5.53 4.03 86.38 0.35 5.88 16 19 N -0.62 -27.11 2.43 -726.94 -1.76 -28.88 16 20 C 0.12 4.12 10.44 127.77 1.33 5.46 16 21 C -0.25 -13.90 9.92 84.03 0.83 -13.07 16 22 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 23 C -0.03 -1.48 5.33 84.86 0.45 -1.02 16 24 N -0.95 -59.69 13.97 21.65 0.30 -59.39 16 25 Si 0.94 45.95 24.91 68.60 1.71 47.66 16 26 H -0.28 -12.83 6.67 99.48 0.66 -12.17 16 27 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 28 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 29 C 0.11 3.42 6.36 86.93 0.55 3.97 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.18 7.32 -2.39 -0.02 1.16 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.41 8.23 6.64 -92.71 -0.62 7.61 16 34 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.06 0.87 7.56 -2.39 -0.02 0.85 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.67 7.57 -2.38 -0.02 0.66 16 43 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 44 H 0.10 1.43 7.32 -2.39 -0.02 1.41 16 45 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.10 1.88 7.24 -2.39 -0.02 1.86 16 47 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 48 H 0.03 1.19 3.00 -2.39 -0.01 1.18 16 49 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 50 H 0.04 1.36 8.01 -2.39 -0.02 1.34 16 51 H 0.07 1.88 5.98 -2.39 -0.01 1.87 16 52 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 53 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 54 H 0.05 1.83 8.09 -2.38 -0.02 1.81 16 Total: -1.00 -74.23 416.79 3.39 -70.84 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.21 Total: 19.98 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 7.88 Total: 20.67 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.32 Total: -123.92 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.10 Total: -35.24 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.71 Total: 47.66 kcal Total: -74.23 3.39 -70.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714901446.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.626 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds