Wall clock time and date at job start Sat Apr 11 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47204 * 119.99532 * 2 1 3 5 5 O 1.21291 * 119.99726 * 349.57605 * 4 2 1 6 6 N 1.34773 * 120.00307 * 169.57058 * 4 2 1 7 7 C 1.46924 * 120.63246 * 2.38792 * 6 4 2 8 8 C 1.53191 * 108.77795 * 126.38701 * 7 6 4 9 9 C 1.53044 * 109.30968 * 54.63753 * 8 7 6 10 10 C 1.53033 * 109.53572 * 298.63030 * 9 8 7 11 11 C 1.46927 * 120.62933 * 182.38584 * 6 4 2 12 12 H 1.09000 * 109.70732 * 113.75375 * 11 6 4 13 13 C 1.50700 * 109.58767 * 353.39353 * 11 6 4 14 14 O 1.21277 * 120.00022 * 301.28571 * 13 11 6 15 15 N 1.34776 * 119.99576 * 121.01243 * 13 11 6 16 16 C 1.46497 * 120.00408 * 354.80786 * 15 13 11 17 17 C 1.46494 * 119.99960 * 174.80987 * 15 13 11 18 18 H 1.09001 * 109.47380 * 7.57949 * 17 15 13 19 19 C 1.53004 * 109.47354 * 247.57770 * 17 15 13 20 20 C 1.52997 * 109.47486 * 127.57732 * 17 15 13 21 21 N 1.46506 * 109.47047 * 300.52925 * 20 17 15 22 22 C 1.36935 * 119.99894 * 185.63963 * 21 20 17 23 23 H 1.08000 * 120.00031 * 7.56238 * 22 21 20 24 24 C 1.38809 * 120.00026 * 187.56126 * 22 21 20 25 25 N 1.31624 * 119.99815 * 6.17046 * 24 22 21 26 26 Si 1.86803 * 120.00429 * 186.16830 * 24 22 21 27 27 H 1.48503 * 109.46730 * 59.99777 * 26 24 22 28 28 H 1.48494 * 109.47210 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46669 * 300.00296 * 26 24 22 30 30 H 1.08999 * 109.47078 * 294.49637 * 1 2 3 31 31 H 1.09009 * 109.46555 * 54.49177 * 1 2 3 32 32 H 1.08993 * 109.46900 * 174.48815 * 1 2 3 33 33 H 1.09000 * 109.47368 * 239.99748 * 2 1 3 34 34 H 1.08997 * 109.47494 * 65.34718 * 3 2 1 35 35 H 1.09008 * 109.47440 * 185.34751 * 3 2 1 36 36 H 1.09006 * 109.47355 * 305.34535 * 3 2 1 37 37 H 1.09007 * 109.58608 * 6.59740 * 7 6 4 38 38 H 1.09004 * 109.70156 * 246.25261 * 7 6 4 39 39 H 1.08998 * 109.49880 * 294.68516 * 8 7 6 40 40 H 1.09007 * 109.52152 * 174.60253 * 8 7 6 41 41 H 1.09000 * 109.45319 * 178.61195 * 9 8 7 42 42 H 1.08998 * 109.44766 * 58.64700 * 9 8 7 43 43 H 1.09000 * 109.50329 * 301.41480 * 10 9 8 44 44 H 1.09006 * 109.49504 * 181.31814 * 10 9 8 45 45 H 1.08998 * 109.47598 * 92.79336 * 16 15 13 46 46 H 1.09000 * 109.47316 * 212.80510 * 16 15 13 47 47 H 1.09007 * 109.46652 * 332.79776 * 16 15 13 48 48 H 1.09005 * 109.46660 * 59.99851 * 19 17 15 49 49 H 1.08999 * 109.47535 * 179.97438 * 19 17 15 50 50 H 1.09000 * 109.46987 * 299.99843 * 19 17 15 51 51 H 1.08999 * 109.47393 * 60.52828 * 20 17 15 52 52 H 1.09002 * 109.47396 * 180.52531 * 20 17 15 53 53 H 0.97003 * 119.99895 * 5.63188 * 21 20 17 54 54 H 0.96999 * 119.99853 * 184.44870 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2605 -1.0037 2.1189 6 7 3.3392 -1.0196 1.3438 7 6 4.2951 -0.6249 0.3002 8 6 5.4447 0.1499 0.9520 9 6 6.0525 -0.6950 2.0740 10 6 4.9898 -0.9703 3.1403 11 6 3.8350 -1.7580 2.5133 12 1 4.1890 -2.7415 2.2041 13 6 2.7247 -1.9141 3.5202 14 8 2.1808 -0.9326 3.9802 15 7 2.3324 -3.1447 3.9052 16 6 2.9049 -4.3305 3.2630 17 6 1.3336 -3.2966 4.9660 18 1 0.9283 -2.3188 5.2262 19 6 1.9898 -3.9213 6.1989 20 6 0.2028 -4.2032 4.4758 21 7 -0.4175 -3.6114 3.2878 22 6 -1.5312 -4.1877 2.7378 23 1 -2.0241 -5.0032 3.2461 24 6 -2.0267 -3.7238 1.5270 25 7 -1.3599 -2.8145 0.8481 26 14 -3.6398 -4.3900 0.8609 27 1 -4.7301 -4.1044 1.8279 28 1 -3.9459 -3.7384 -0.4378 29 1 -3.5253 -5.8573 0.6632 30 1 -0.3633 0.4261 0.9352 31 1 -0.3633 0.5970 -0.8366 32 1 -0.3633 -1.0229 -0.0987 33 1 1.8934 -0.5139 -0.8899 34 1 1.7570 1.9280 0.9339 35 1 3.1258 1.4441 -0.0958 36 1 1.6006 1.9833 -0.8383 37 1 3.7955 0.0096 -0.4319 38 1 4.6874 -1.5138 -0.1940 39 1 5.0653 1.0846 1.3650 40 1 6.2083 0.3658 0.2046 41 1 6.8866 -0.1560 2.5232 42 1 6.4091 -1.6399 1.6642 43 1 4.6147 -0.0251 3.5328 44 1 5.4296 -1.5523 3.9503 45 1 3.7672 -4.6729 3.8349 46 1 2.1556 -5.1213 3.2264 47 1 3.2177 -4.0793 2.2494 48 1 2.7954 -3.2753 6.5482 49 1 1.2467 -4.0339 6.9884 50 1 2.3950 -4.8991 5.9387 51 1 0.6064 -5.1840 4.2244 52 1 -0.5450 -4.3087 5.2618 53 1 -0.0392 -2.8111 2.8908 54 1 -1.7367 -2.4431 0.0350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715376621.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:24 Heat of formation + Delta-G solvation = -58.952312 kcal Electronic energy + Delta-G solvation = -33865.582563 eV Core-core repulsion = 29837.782603 eV Total energy + Delta-G solvation = -4027.799961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.01072 -40.06433 -38.31238 -37.58319 -35.65970 -35.39117 -33.68931 -33.52337 -32.18123 -31.42553 -27.97531 -27.70509 -27.31543 -26.98859 -24.87486 -24.38295 -24.05588 -22.14059 -21.45343 -20.24557 -19.28434 -18.94692 -18.51070 -17.82715 -17.08877 -16.73368 -16.48508 -16.17259 -16.01687 -15.53767 -15.41283 -15.23581 -14.88818 -14.86171 -14.63233 -14.43051 -14.05816 -13.81253 -13.73963 -13.67571 -13.41704 -13.32998 -13.23106 -13.06901 -12.99832 -12.83397 -12.73078 -12.61385 -12.49563 -12.34530 -12.15388 -11.99825 -11.85086 -11.81286 -11.74248 -11.65642 -11.56683 -11.42116 -10.83359 -10.43965 -10.02988 -9.51043 -9.28546 -8.84125 -7.73867 -5.08136 1.44256 1.48057 1.53313 1.62767 1.96507 2.24853 2.43161 2.60154 3.47068 3.48012 3.76369 3.85391 3.93845 3.95783 4.02495 4.06851 4.14818 4.19804 4.22037 4.25739 4.32163 4.36076 4.51702 4.56674 4.58667 4.67113 4.70658 4.75408 4.77448 4.82657 4.87421 4.92705 4.92951 4.96929 5.01355 5.02501 5.06369 5.15927 5.16134 5.18736 5.24064 5.32461 5.36567 5.49740 5.51455 5.67020 5.77427 5.83513 6.43535 6.56255 6.65636 7.40526 7.51264 7.68649 8.29123 8.60764 9.41490 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.005507 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.821401 B = 5083.292290 C = 7043.882624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.486 3.514 5 O -0.511 6.511 6 N -0.610 5.610 7 C 0.095 3.905 8 C -0.132 4.132 9 C -0.109 4.109 10 C -0.114 4.114 11 C 0.126 3.874 12 H 0.106 0.894 13 C 0.528 3.472 14 O -0.568 6.568 15 N -0.603 5.603 16 C 0.080 3.920 17 C 0.137 3.863 18 H 0.052 0.948 19 C -0.139 4.139 20 C 0.142 3.858 21 N -0.746 5.746 22 C -0.263 4.263 23 H 0.062 0.938 24 C -0.061 4.061 25 N -0.922 5.922 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.279 1.279 30 H 0.019 0.981 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.033 0.967 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.027 0.973 52 H 0.022 0.978 53 H 0.393 0.607 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.821 3.394 -2.074 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.193 4.193 4 C 0.274 3.726 5 O -0.384 6.384 6 N -0.348 5.348 7 C -0.026 4.026 8 C -0.170 4.170 9 C -0.146 4.146 10 C -0.152 4.152 11 C 0.019 3.981 12 H 0.123 0.877 13 C 0.317 3.683 14 O -0.446 6.446 15 N -0.337 5.337 16 C -0.062 4.062 17 C 0.033 3.967 18 H 0.071 0.929 19 C -0.197 4.197 20 C 0.014 3.986 21 N -0.392 5.392 22 C -0.395 4.395 23 H 0.080 0.920 24 C -0.256 4.256 25 N -0.571 5.571 26 Si 0.793 3.207 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.206 1.206 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.045 0.955 52 H 0.040 0.960 53 H 0.228 0.772 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.002 3.591 -1.417 21.354 hybrid contribution -1.739 -0.082 -0.267 1.761 sum 19.263 3.510 -1.684 19.652 Atomic orbital electron populations 1.21644 0.94047 1.03679 0.99720 1.21160 0.96978 0.98005 0.95639 1.21894 1.02425 0.92749 1.02197 1.21369 0.82185 0.79775 0.89295 1.90929 1.55526 1.51725 1.40262 1.48065 1.07179 1.58085 1.21465 1.22231 0.90190 1.00699 0.89497 1.21954 0.97669 0.98258 0.99106 1.21499 0.96621 1.01504 0.95005 1.21792 0.94416 0.99596 0.99422 1.21348 0.92861 0.97771 0.86107 0.87679 1.20460 0.83257 0.82660 0.81915 1.90626 1.56141 1.39417 1.58463 1.47634 1.41561 1.06271 1.38218 1.21862 0.99109 0.87584 0.97639 1.21064 0.88496 0.98857 0.88283 0.92924 1.21946 1.00967 1.01385 0.95437 1.21120 0.92957 0.95111 0.89379 1.42727 1.32299 1.32664 1.31493 1.19447 1.04287 1.14486 1.01319 0.91988 1.25501 1.02060 1.00876 0.97187 1.69980 1.37526 1.32132 1.17427 0.85410 0.80706 0.77705 0.76926 1.21678 1.21890 1.20551 0.96182 0.91294 0.91450 0.87596 0.94779 0.89400 0.89689 0.87869 0.89679 0.92689 0.87352 0.89603 0.89750 0.93493 0.89628 0.89251 0.92144 0.91537 0.91970 0.90744 0.90432 0.95546 0.96001 0.77168 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.66 71.98 0.62 -4.85 16 2 C -0.10 -3.18 2.40 -11.54 -0.03 -3.20 16 3 C -0.14 -3.35 8.81 71.98 0.63 -2.71 16 4 C 0.49 19.34 6.79 87.66 0.60 19.93 16 5 O -0.51 -26.57 9.62 21.20 0.20 -26.37 16 6 N -0.61 -18.19 2.97 -799.15 -2.38 -20.57 16 7 C 0.09 1.72 5.65 86.36 0.49 2.21 16 8 C -0.13 -1.79 6.06 30.67 0.19 -1.60 16 9 C -0.11 -1.49 5.88 30.62 0.18 -1.31 16 10 C -0.11 -2.54 5.33 30.67 0.16 -2.38 16 11 C 0.13 3.68 2.90 44.23 0.13 3.81 16 12 H 0.11 2.60 5.49 -2.39 -0.01 2.58 16 13 C 0.53 21.13 4.50 87.66 0.39 21.52 16 14 O -0.57 -28.47 13.46 21.24 0.29 -28.19 16 15 N -0.60 -22.68 2.35 -822.61 -1.93 -24.61 16 16 C 0.08 2.38 9.36 127.77 1.20 3.58 16 17 C 0.14 5.51 2.76 44.99 0.12 5.64 16 18 H 0.05 2.58 6.93 -2.39 -0.02 2.57 16 19 C -0.14 -3.93 9.30 71.98 0.67 -3.26 16 20 C 0.14 6.54 5.38 86.38 0.46 7.01 16 21 N -0.75 -43.22 5.46 -343.45 -1.88 -45.10 16 22 C -0.26 -16.10 9.98 84.03 0.84 -15.26 16 23 H 0.06 3.67 7.84 -2.91 -0.02 3.64 16 24 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 25 N -0.92 -57.46 11.59 21.65 0.25 -57.21 16 26 Si 0.96 48.69 29.56 68.60 2.03 50.71 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 29 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 30 H 0.02 0.93 7.79 -2.39 -0.02 0.91 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.07 3.32 5.50 -2.39 -0.01 3.31 16 33 H 0.11 2.94 7.50 -2.39 -0.02 2.92 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.63 5.61 -2.38 -0.01 1.61 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.10 1.67 4.10 -2.38 -0.01 1.66 16 38 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.05 1.34 7.98 -2.39 -0.02 1.32 16 44 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 2.02 6.10 -2.39 -0.01 2.01 16 47 H 0.07 1.92 6.01 -2.38 -0.01 1.91 16 48 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 49 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.08 1.85 7.87 -2.39 -0.02 1.83 16 51 H 0.03 1.16 6.53 -2.39 -0.02 1.15 16 52 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.39 24.36 5.92 -92.71 -0.55 23.81 16 54 H 0.25 14.79 7.44 -92.71 -0.69 14.10 16 Total: -1.00 -87.29 400.06 4.13 -83.15 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: 0.42 Total: 42.31 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 7.12 Total: 25.86 kcal Atomic # 7 Polarization: -141.55 SS G_CDS: -5.93 Total: -147.48 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: 0.49 Total: -54.56 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.71 kcal Total: -87.29 4.13 -83.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715376621.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.200 kcal (2) G-P(sol) polarization free energy of solvation -87.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds