Wall clock time and date at job start Sat Apr 11 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.50699 * 109.47069 * 120.00321 * 2 1 3 5 5 O 1.21282 * 119.99773 * 351.85971 * 4 2 1 6 6 N 1.34778 * 119.99864 * 171.85609 * 4 2 1 7 7 C 1.46925 * 120.62944 * 7.00541 * 6 4 2 8 8 C 1.53198 * 108.77177 * 233.62794 * 7 6 4 9 9 C 1.53040 * 109.31371 * 305.36380 * 8 7 6 10 10 C 1.53040 * 109.53443 * 61.36639 * 9 8 7 11 11 C 1.46929 * 120.62914 * 187.02717 * 6 4 2 12 12 H 1.08999 * 109.58465 * 246.30080 * 11 6 4 13 13 C 1.50704 * 109.58460 * 6.58084 * 11 6 4 14 14 O 1.21284 * 119.99830 * 57.79975 * 13 11 6 15 15 N 1.34776 * 119.99676 * 237.79035 * 13 11 6 16 16 C 1.46491 * 120.00278 * 5.10789 * 15 13 11 17 17 C 1.46500 * 119.99610 * 185.09785 * 15 13 11 18 18 H 1.09004 * 109.47260 * 356.07977 * 17 15 13 19 19 C 1.53003 * 109.46840 * 116.07685 * 17 15 13 20 20 C 1.53002 * 109.47534 * 236.07772 * 17 15 13 21 21 N 1.46503 * 109.46710 * 61.07577 * 20 17 15 22 22 C 1.36931 * 119.99675 * 178.51693 * 21 20 17 23 23 H 1.08001 * 120.00283 * 11.21304 * 22 21 20 24 24 C 1.38811 * 119.99968 * 191.21452 * 22 21 20 25 25 N 1.31616 * 120.00158 * 9.32116 * 24 22 21 26 26 Si 1.86804 * 119.99966 * 189.32432 * 24 22 21 27 27 H 1.48503 * 109.46968 * 179.97438 * 26 24 22 28 28 H 1.48495 * 109.47072 * 299.99786 * 26 24 22 29 29 H 1.48498 * 109.47065 * 59.99874 * 26 24 22 30 30 H 1.09004 * 109.47284 * 296.81326 * 1 2 3 31 31 H 1.09004 * 109.47513 * 56.81059 * 1 2 3 32 32 H 1.08997 * 109.47769 * 176.81409 * 1 2 3 33 33 H 1.09000 * 109.46617 * 240.00388 * 2 1 3 34 34 H 1.08999 * 109.47074 * 64.55439 * 3 2 1 35 35 H 1.09001 * 109.47296 * 184.55496 * 3 2 1 36 36 H 1.08999 * 109.47381 * 304.55517 * 3 2 1 37 37 H 1.08996 * 109.58951 * 353.41828 * 7 6 4 38 38 H 1.09003 * 109.58334 * 113.84306 * 7 6 4 39 39 H 1.08990 * 109.49754 * 65.31926 * 8 7 6 40 40 H 1.09004 * 109.49283 * 185.38472 * 8 7 6 41 41 H 1.08997 * 109.46117 * 181.38688 * 9 8 7 42 42 H 1.09000 * 109.45968 * 301.36267 * 9 8 7 43 43 H 1.08999 * 109.49693 * 178.67753 * 10 9 8 44 44 H 1.09005 * 109.49745 * 58.58733 * 10 9 8 45 45 H 1.08999 * 109.47082 * 275.37379 * 16 15 13 46 46 H 1.09000 * 109.47246 * 35.37551 * 16 15 13 47 47 H 1.08998 * 109.47377 * 155.38171 * 16 15 13 48 48 H 1.08991 * 109.47241 * 300.00439 * 19 17 15 49 49 H 1.09004 * 109.46955 * 60.00106 * 19 17 15 50 50 H 1.08998 * 109.46975 * 180.02562 * 19 17 15 51 51 H 1.09001 * 109.47103 * 301.08162 * 20 17 15 52 52 H 1.08997 * 109.47205 * 181.07595 * 20 17 15 53 53 H 0.97002 * 120.00001 * 358.52188 * 21 20 17 54 54 H 0.97003 * 119.99976 * 355.82772 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2541 -1.0409 2.1000 6 7 3.3463 -0.9788 1.3644 7 6 4.3200 -0.4531 0.3978 8 6 5.1543 -1.6178 -0.1446 9 6 5.7794 -2.3808 1.0256 10 6 4.6719 -2.9524 1.9138 11 6 3.8321 -1.8029 2.4795 12 1 4.4440 -1.1936 3.1447 13 6 2.6592 -2.3621 3.2429 14 8 1.8334 -3.0430 2.6724 15 7 2.5280 -2.1056 4.5595 16 6 3.4614 -1.1933 5.2246 17 6 1.4517 -2.7391 5.3254 18 1 0.8229 -3.3233 4.6535 19 6 2.0556 -3.6595 6.3880 20 6 0.6066 -1.6603 6.0058 21 7 0.0077 -0.7944 4.9869 22 6 -0.8199 0.2306 5.3602 23 1 -0.8902 0.5170 6.3991 24 6 -1.5686 0.9018 4.4031 25 7 -1.6269 0.4415 3.1714 26 14 -2.4932 2.4583 4.8633 27 1 -3.2096 2.9792 3.6713 28 1 -3.4734 2.1529 5.9361 29 1 -1.5313 3.4805 5.3479 30 1 -0.3634 0.4636 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3634 -1.0260 -0.0571 33 1 1.8932 -0.5138 -0.8900 34 1 1.7449 1.9322 0.9280 35 1 3.1270 1.4435 -0.0816 36 1 1.6116 1.9794 -0.8463 37 1 3.7936 0.0331 -0.4235 38 1 4.9737 0.2657 0.8919 39 1 4.5134 -2.2893 -0.7159 40 1 5.9429 -1.2308 -0.7899 41 1 6.3935 -3.1952 0.6415 42 1 6.4003 -1.7026 1.6109 43 1 5.1174 -3.5154 2.7339 44 1 4.0355 -3.6114 1.3230 45 1 4.3558 -1.7412 5.5211 46 1 3.7368 -0.3918 4.5391 47 1 2.9862 -0.7681 6.1086 48 1 2.6576 -4.4280 5.9034 49 1 2.6844 -3.0753 7.0599 50 1 1.2548 -4.1312 6.9576 51 1 1.2393 -1.0639 6.6631 52 1 -0.1826 -2.1323 6.5910 53 1 0.1974 -0.9474 4.0480 54 1 -1.0991 -0.3316 2.9171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715376622.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:28 Heat of formation + Delta-G solvation = -70.388658 kcal Electronic energy + Delta-G solvation = -33910.039178 eV Core-core repulsion = 29881.743300 eV Total energy + Delta-G solvation = -4028.295878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.12713 -40.19862 -38.45179 -37.70777 -35.97121 -35.54787 -33.76318 -33.60095 -32.15131 -31.36183 -28.08409 -27.81208 -27.17613 -26.97380 -24.92210 -24.49429 -24.21825 -22.29698 -21.35545 -20.39708 -19.54891 -19.14132 -18.62257 -17.84679 -17.23220 -16.83986 -16.61678 -16.25692 -15.91685 -15.63491 -15.46295 -15.25608 -15.10219 -14.87940 -14.79170 -14.59622 -14.29609 -14.07831 -13.86305 -13.65029 -13.58448 -13.48056 -13.15414 -13.06167 -12.97693 -12.80281 -12.71350 -12.59624 -12.50277 -12.45896 -12.15852 -11.96077 -11.95429 -11.89919 -11.86157 -11.69962 -11.44908 -11.23185 -10.76192 -10.54568 -10.29354 -9.61151 -9.42831 -8.94121 -8.25671 -5.19429 1.51989 1.53118 1.64415 1.80367 1.81479 2.12837 2.28233 2.73354 3.36711 3.48021 3.65635 3.79059 3.84438 3.86758 3.95662 4.00971 4.05680 4.08378 4.12279 4.18448 4.20483 4.26607 4.40582 4.43573 4.51349 4.61630 4.62145 4.66386 4.72503 4.73363 4.81363 4.85312 4.87995 4.89846 4.91149 4.91816 4.97032 5.05772 5.07520 5.14101 5.18684 5.21881 5.31229 5.44876 5.52746 5.60901 5.64013 5.71799 6.43374 6.55020 6.68436 7.18293 7.39942 7.54214 8.22818 8.40783 9.25323 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.005651 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.259064 B = 4953.516962 C = 6921.553993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.140 4.140 4 C 0.486 3.514 5 O -0.524 6.524 6 N -0.608 5.608 7 C 0.094 3.906 8 C -0.133 4.133 9 C -0.109 4.109 10 C -0.114 4.114 11 C 0.128 3.872 12 H 0.108 0.892 13 C 0.527 3.473 14 O -0.577 6.577 15 N -0.603 5.603 16 C 0.080 3.920 17 C 0.137 3.863 18 H 0.050 0.950 19 C -0.138 4.138 20 C 0.147 3.853 21 N -0.758 5.758 22 C -0.356 4.356 23 H 0.053 0.947 24 C -0.098 4.098 25 N -0.956 5.956 26 Si 1.129 2.871 27 H -0.291 1.291 28 H -0.281 1.281 29 H -0.280 1.280 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.116 0.884 34 H 0.028 0.972 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.029 0.971 52 H 0.013 0.987 53 H 0.382 0.618 54 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.416 -2.127 -6.142 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.197 4.197 4 C 0.274 3.726 5 O -0.398 6.398 6 N -0.345 5.345 7 C -0.027 4.027 8 C -0.171 4.171 9 C -0.146 4.146 10 C -0.153 4.153 11 C 0.021 3.979 12 H 0.126 0.874 13 C 0.317 3.683 14 O -0.456 6.456 15 N -0.336 5.336 16 C -0.062 4.062 17 C 0.032 3.968 18 H 0.068 0.932 19 C -0.197 4.197 20 C 0.019 3.981 21 N -0.406 5.406 22 C -0.487 4.487 23 H 0.071 0.929 24 C -0.292 4.292 25 N -0.602 5.602 26 Si 0.954 3.046 27 H -0.217 1.217 28 H -0.208 1.208 29 H -0.206 1.206 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.134 0.866 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.047 0.953 52 H 0.031 0.969 53 H 0.218 0.782 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.480 -1.462 -6.289 22.430 hybrid contribution 0.061 -1.494 0.607 1.614 sum 21.542 -2.956 -5.681 22.474 Atomic orbital electron populations 1.21604 0.94371 1.00578 1.02618 1.21189 0.96567 0.98376 0.95628 1.21958 1.02894 0.92513 1.02352 1.21476 0.82180 0.79485 0.89426 1.90810 1.55683 1.50839 1.42504 1.48091 1.06294 1.51931 1.28190 1.22363 0.91073 0.96998 0.92224 1.21971 0.99925 0.97014 0.98231 1.21506 0.96063 1.00853 0.96216 1.21801 0.97257 0.95499 1.00735 1.21335 0.92924 0.94454 0.89150 0.87423 1.20560 0.86232 0.79759 0.81757 1.90640 1.43812 1.43138 1.68036 1.47638 1.30793 1.46595 1.08599 1.21871 0.93083 0.93028 0.98211 1.21063 0.88554 0.93633 0.93502 0.93201 1.21942 1.01599 0.98625 0.97493 1.21079 0.94034 0.91249 0.91727 1.42759 1.56564 1.35220 1.06047 1.20280 1.22112 1.11578 0.94765 0.92920 1.27241 1.00828 1.06730 0.94415 1.70740 1.42057 1.27582 1.19793 0.82647 0.75070 0.72138 0.74710 1.21654 1.20760 1.20627 0.93485 0.90323 0.95530 0.86645 0.95288 0.88472 0.89518 0.87496 0.89072 0.92837 0.87238 0.89615 0.89566 0.89497 0.93530 0.88902 0.92045 0.91454 0.91575 0.90181 0.90922 0.95321 0.96905 0.78206 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.58 71.98 0.62 -4.84 16 2 C -0.10 -3.06 2.42 -11.54 -0.03 -3.09 16 3 C -0.14 -3.54 8.75 71.98 0.63 -2.91 16 4 C 0.49 18.85 6.66 87.66 0.58 19.43 16 5 O -0.52 -26.99 9.00 20.84 0.19 -26.80 16 6 N -0.61 -17.22 2.97 -799.17 -2.38 -19.60 16 7 C 0.09 1.53 5.30 86.36 0.46 1.99 16 8 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 9 C -0.11 -1.36 5.88 30.62 0.18 -1.18 16 10 C -0.11 -2.44 5.33 30.67 0.16 -2.28 16 11 C 0.13 3.58 2.91 44.23 0.13 3.71 16 12 H 0.11 2.48 5.64 -2.39 -0.01 2.46 16 13 C 0.53 20.82 4.36 87.66 0.38 21.20 16 14 O -0.58 -28.95 13.74 20.83 0.29 -28.66 16 15 N -0.60 -22.34 2.47 -822.60 -2.04 -24.38 16 16 C 0.08 2.24 8.92 127.77 1.14 3.38 16 17 C 0.14 5.58 2.72 44.99 0.12 5.70 16 18 H 0.05 2.50 6.91 -2.39 -0.02 2.48 16 19 C -0.14 -3.94 9.25 71.98 0.67 -3.27 16 20 C 0.15 7.03 5.53 86.38 0.48 7.51 16 21 N -0.76 -45.51 5.38 -343.45 -1.85 -47.35 16 22 C -0.36 -22.73 9.97 84.03 0.84 -21.89 16 23 H 0.05 3.27 7.85 -2.91 -0.02 3.25 16 24 C -0.10 -6.28 5.49 84.86 0.47 -5.81 16 25 N -0.96 -65.45 13.08 21.65 0.28 -65.17 16 26 Si 1.13 56.65 29.93 68.60 2.05 58.70 16 27 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 29 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 30 H 0.05 2.43 6.93 -2.39 -0.02 2.41 16 31 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.12 2.85 7.60 -2.39 -0.02 2.83 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.69 5.29 -2.39 -0.01 1.67 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.51 4.28 -2.39 -0.01 1.50 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.29 8.00 -2.38 -0.02 1.27 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 1.70 6.49 -2.39 -0.02 1.69 16 47 H 0.07 2.03 6.21 -2.39 -0.01 2.02 16 48 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.90 7.77 -2.39 -0.02 1.88 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.03 1.30 6.48 -2.39 -0.02 1.28 16 52 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.38 24.19 4.47 -92.71 -0.41 23.77 16 54 H 0.26 18.45 6.07 -92.71 -0.56 17.89 16 Total: -1.00 -95.45 400.05 4.24 -91.20 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: 0.68 Total: 45.85 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 7.01 Total: 16.20 kcal Atomic # 7 Polarization: -150.53 SS G_CDS: -5.97 Total: -156.50 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: 0.47 Total: -55.46 kcal Atomic # 14 Polarization: 56.65 SS G_CDS: 2.05 Total: 58.70 kcal Total: -95.45 4.24 -91.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715376622.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.815 kcal (2) G-P(sol) polarization free energy of solvation -95.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds