Wall clock time and date at job start Sat Apr 11 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47273 * 120.00247 * 2 1 3 5 5 O 1.21281 * 119.99959 * 345.35036 * 4 2 1 6 6 N 1.34781 * 120.00463 * 165.35285 * 4 2 1 7 7 C 1.46924 * 120.62538 * 355.67545 * 6 4 2 8 8 C 1.53197 * 108.77496 * 233.58416 * 7 6 4 9 9 C 1.53039 * 109.30961 * 305.36691 * 8 7 6 10 10 C 1.53045 * 109.53947 * 61.36817 * 9 8 7 11 11 C 1.46917 * 120.63453 * 175.39503 * 6 4 2 12 12 H 1.09002 * 109.58895 * 246.20643 * 11 6 4 13 13 C 1.50710 * 109.58410 * 6.62744 * 11 6 4 14 14 O 1.21274 * 119.99799 * 65.08657 * 13 11 6 15 15 N 1.34780 * 119.99694 * 245.08182 * 13 11 6 16 16 C 1.46498 * 120.00422 * 5.26209 * 15 13 11 17 17 C 1.46504 * 119.99512 * 185.26939 * 15 13 11 18 18 H 1.08999 * 109.47089 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.46922 * 239.99632 * 17 15 13 20 20 C 1.53006 * 109.46988 * 120.00126 * 17 15 13 21 21 N 1.46496 * 109.46806 * 304.99338 * 20 17 15 22 22 C 1.36937 * 119.99909 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00249 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00173 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99767 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47046 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.46961 * 119.99502 * 26 24 22 29 29 H 1.48504 * 109.46592 * 239.99897 * 26 24 22 30 30 H 1.08996 * 109.47049 * 300.00224 * 1 2 3 31 31 H 1.09001 * 109.47159 * 60.00013 * 1 2 3 32 32 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47519 * 240.00143 * 2 1 3 34 34 H 1.09001 * 109.46984 * 185.30443 * 3 2 1 35 35 H 1.08993 * 109.47039 * 305.30163 * 3 2 1 36 36 H 1.08999 * 109.46930 * 65.30228 * 3 2 1 37 37 H 1.09000 * 109.59167 * 353.37700 * 7 6 4 38 38 H 1.09004 * 109.58705 * 113.80122 * 7 6 4 39 39 H 1.08999 * 109.49274 * 65.31932 * 8 7 6 40 40 H 1.09000 * 109.49872 * 185.38224 * 8 7 6 41 41 H 1.09011 * 109.45627 * 181.38309 * 9 8 7 42 42 H 1.08997 * 109.46513 * 301.35357 * 9 8 7 43 43 H 1.09002 * 109.49546 * 58.57987 * 10 9 8 44 44 H 1.08992 * 109.49565 * 178.64533 * 10 9 8 45 45 H 1.09001 * 109.46735 * 84.21460 * 16 15 13 46 46 H 1.08994 * 109.47675 * 204.22064 * 16 15 13 47 47 H 1.09003 * 109.47209 * 324.22567 * 16 15 13 48 48 H 1.09005 * 109.46893 * 300.00507 * 19 17 15 49 49 H 1.08999 * 109.46826 * 59.99655 * 19 17 15 50 50 H 1.08995 * 109.47030 * 180.02562 * 19 17 15 51 51 H 1.08998 * 109.47262 * 64.99311 * 20 17 15 52 52 H 1.08996 * 109.46875 * 184.99850 * 20 17 15 53 53 H 0.96998 * 120.00397 * 0.02562 * 21 20 17 54 54 H 0.97003 * 119.99679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2764 -0.9357 2.1517 6 7 3.3217 -1.0955 1.3071 7 6 4.2261 -0.9150 0.1634 8 6 4.8808 -2.2606 -0.1647 9 6 5.5583 -2.8133 1.0913 10 6 4.5085 -3.0401 2.1815 11 6 3.8510 -1.6982 2.5380 12 1 4.5908 -1.0322 2.9821 13 6 2.7248 -1.9284 3.5126 14 8 1.8460 -2.7210 3.2475 15 7 2.6943 -1.2534 4.6788 16 6 3.6900 -0.2136 4.9497 17 6 1.6653 -1.5598 5.6757 18 1 1.0201 -2.3538 5.2996 19 6 0.8283 -0.3079 5.9459 20 6 2.3333 -2.0167 6.9742 21 7 3.2278 -3.1423 6.6933 22 6 3.9387 -3.7222 7.7100 23 1 3.8401 -3.3495 8.7188 24 6 4.7868 -4.7884 7.4437 25 7 4.9073 -5.2423 6.2142 26 14 5.7559 -5.5799 8.8309 27 1 5.4447 -4.8900 10.1085 28 1 5.3845 -7.0136 8.9388 29 1 7.2091 -5.4648 8.5477 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1259 1.4439 -0.0950 35 1 1.6012 1.9830 -0.8386 36 1 1.7563 1.9281 0.9337 37 1 3.6591 -0.5645 -0.6991 38 1 4.9959 -0.1864 0.4177 39 1 4.1194 -2.9619 -0.5060 40 1 5.6250 -2.1215 -0.9489 41 1 6.0460 -3.7590 0.8544 42 1 6.3022 -2.1002 1.4464 43 1 3.7506 -3.7342 1.8180 44 1 4.9880 -3.4563 3.0674 45 1 3.3645 0.7261 4.5035 46 1 3.7987 -0.0862 6.0267 47 1 4.6479 -0.5071 4.5201 48 1 1.4734 0.4863 6.3217 49 1 0.3525 0.0176 5.0208 50 1 0.0630 -0.5357 6.6878 51 1 2.9079 -1.1925 7.3967 52 1 1.5688 -2.3290 7.6856 53 1 3.3167 -3.4768 5.7872 54 1 5.5003 -5.9871 6.0282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715376623.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:33 Heat of formation + Delta-G solvation = -72.981681 kcal Electronic energy + Delta-G solvation = -33122.308773 eV Core-core repulsion = 29093.900454 eV Total energy + Delta-G solvation = -4028.408320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.11725 -40.18236 -38.48315 -37.62903 -35.79143 -35.49363 -33.82515 -33.59896 -32.33560 -31.44218 -28.04105 -27.76945 -27.42131 -27.04879 -24.99661 -24.54166 -24.18482 -22.25825 -21.41779 -20.36977 -19.45356 -19.10671 -18.62998 -17.81159 -17.19153 -16.85013 -16.53836 -16.43043 -16.04444 -15.51629 -15.37079 -15.19969 -15.08085 -14.86307 -14.76203 -14.53092 -14.33930 -13.99977 -13.73728 -13.69954 -13.57434 -13.44211 -13.28971 -13.14840 -12.98235 -12.93644 -12.84349 -12.81572 -12.50620 -12.43374 -12.13963 -12.10259 -12.02758 -11.92064 -11.82986 -11.75530 -11.72139 -11.56794 -10.98643 -10.51067 -10.32117 -9.68725 -9.36073 -9.00420 -7.92869 -5.23344 1.44776 1.46909 1.56724 1.57112 1.67912 2.11443 2.38963 2.55067 3.37528 3.39343 3.65511 3.77674 3.82179 3.88603 3.94440 3.98931 4.05666 4.10443 4.11565 4.17988 4.27798 4.30291 4.37681 4.45775 4.56250 4.64321 4.65084 4.73330 4.75503 4.77915 4.80715 4.87296 4.88391 4.89086 4.93239 4.95525 5.01741 5.07236 5.11677 5.14675 5.17097 5.26956 5.30972 5.34323 5.40669 5.47557 5.50017 5.78266 6.26168 6.42205 6.61105 7.21712 7.32365 7.55329 8.07044 8.32969 9.30242 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.003980 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.673080 B = 7034.220384 C = 8403.795796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.490 3.510 5 O -0.547 6.547 6 N -0.600 5.600 7 C 0.102 3.898 8 C -0.132 4.132 9 C -0.110 4.110 10 C -0.117 4.117 11 C 0.130 3.870 12 H 0.109 0.891 13 C 0.537 3.463 14 O -0.579 6.579 15 N -0.601 5.601 16 C 0.083 3.917 17 C 0.140 3.860 18 H 0.052 0.948 19 C -0.135 4.135 20 C 0.144 3.856 21 N -0.740 5.740 22 C -0.245 4.245 23 H 0.077 0.923 24 C -0.074 4.074 25 N -0.966 5.966 26 Si 0.976 3.024 27 H -0.265 1.265 28 H -0.298 1.298 29 H -0.289 1.289 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.076 0.924 51 H 0.039 0.961 52 H 0.026 0.974 53 H 0.370 0.630 54 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 18.727 -18.025 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 C -0.192 4.192 4 C 0.280 3.720 5 O -0.424 6.424 6 N -0.336 5.336 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.148 4.148 10 C -0.156 4.156 11 C 0.023 3.977 12 H 0.127 0.873 13 C 0.326 3.674 14 O -0.458 6.458 15 N -0.334 5.334 16 C -0.059 4.059 17 C 0.036 3.964 18 H 0.071 0.929 19 C -0.193 4.193 20 C 0.017 3.983 21 N -0.383 5.383 22 C -0.376 4.376 23 H 0.095 0.905 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.225 1.225 29 H -0.216 1.216 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.044 0.956 53 H 0.202 0.798 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.022 18.213 -17.480 25.244 hybrid contribution 0.270 -1.570 0.905 1.832 sum 0.248 16.643 -16.574 23.489 Atomic orbital electron populations 1.21604 0.93322 1.01284 1.02545 1.21358 0.97559 0.98553 0.94946 1.21771 1.02512 0.91887 1.03038 1.21759 0.81232 0.78556 0.90477 1.90834 1.55487 1.55240 1.40846 1.48212 1.10528 1.60705 1.14162 1.22250 0.93651 0.98203 0.87791 1.21963 1.00665 0.96541 0.97792 1.21501 0.96529 1.02506 0.94224 1.21783 0.98783 0.94676 1.00359 1.21307 0.93935 0.96864 0.85545 0.87335 1.20224 0.85552 0.79602 0.81989 1.90597 1.39577 1.39253 1.76346 1.47556 1.31348 1.38104 1.16438 1.21829 0.91104 0.90004 1.02999 1.21032 0.89403 0.98181 0.87797 0.92936 1.21869 0.99660 0.96163 1.01630 1.21184 0.92431 0.90057 0.94649 1.42503 1.50878 1.37022 1.07864 1.19682 1.17200 1.10596 0.90149 0.90462 1.25587 1.02233 1.00053 0.98754 1.69886 1.42591 1.29205 1.20009 0.85046 0.77963 0.77586 0.78954 1.18936 1.22541 1.21622 0.93829 0.88916 0.94753 0.86477 0.90183 0.88934 0.93805 0.86545 0.88344 0.92963 0.86776 0.91084 0.89743 0.94106 0.93009 0.91344 0.90430 0.91087 0.90525 0.93240 0.90503 0.94307 0.95590 0.79832 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.60 71.98 0.62 -2.04 16 2 C -0.10 -1.86 2.40 -11.54 -0.03 -1.89 16 3 C -0.13 -1.58 8.97 71.98 0.65 -0.93 16 4 C 0.49 14.23 6.78 87.66 0.59 14.82 16 5 O -0.55 -22.09 11.48 20.79 0.24 -21.85 16 6 N -0.60 -15.22 2.97 -798.36 -2.37 -17.59 16 7 C 0.10 1.41 5.42 86.36 0.47 1.87 16 8 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 9 C -0.11 -2.41 5.88 30.62 0.18 -2.23 16 10 C -0.12 -4.01 5.31 30.82 0.16 -3.85 16 11 C 0.13 4.24 2.99 44.38 0.13 4.38 16 12 H 0.11 3.04 5.41 -2.39 -0.01 3.03 16 13 C 0.54 22.97 3.97 87.66 0.35 23.31 16 14 O -0.58 -30.72 13.80 20.81 0.29 -30.43 16 15 N -0.60 -23.42 2.24 -822.57 -1.85 -25.27 16 16 C 0.08 2.46 9.12 127.77 1.16 3.63 16 17 C 0.14 5.73 2.79 44.99 0.13 5.85 16 18 H 0.05 2.61 6.91 -2.39 -0.02 2.60 16 19 C -0.13 -4.21 9.19 71.98 0.66 -3.54 16 20 C 0.14 6.36 5.52 86.38 0.48 6.83 16 21 N -0.74 -40.93 5.43 -343.45 -1.87 -42.80 16 22 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 24 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 25 N -0.97 -61.64 13.06 21.65 0.28 -61.35 16 26 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H 0.04 1.07 7.94 -2.39 -0.02 1.05 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.12 1.49 6.66 -2.38 -0.02 1.47 16 34 H 0.08 0.65 6.84 -2.39 -0.02 0.63 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.96 5.14 -2.39 -0.01 0.95 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.65 7.89 -2.39 -0.02 1.63 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 2.28 6.54 -2.39 -0.02 2.26 16 47 H 0.07 1.99 5.96 -2.39 -0.01 1.97 16 48 H 0.08 2.01 7.67 -2.38 -0.02 1.99 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.04 1.58 6.87 -2.39 -0.02 1.56 16 52 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 53 H 0.37 22.63 7.06 -92.71 -0.65 21.97 16 54 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -87.46 409.39 4.03 -83.43 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.22 Total: 39.33 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 7.05 Total: 27.00 kcal Atomic # 7 Polarization: -141.21 SS G_CDS: -5.80 Total: -147.01 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: 0.53 Total: -52.29 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -87.46 4.03 -83.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715376623.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.453 kcal (2) G-P(sol) polarization free energy of solvation -87.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds