Wall clock time and date at job start Sat Apr 11 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47177 * 120.00244 * 2 1 3 5 5 N 1.46901 * 109.47633 * 174.99935 * 4 2 1 6 6 C 1.46898 * 111.00238 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47062 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00297 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00468 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00381 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00114 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99710 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47181 * 90.00559 * 14 12 10 16 16 H 1.48505 * 109.47394 * 210.00216 * 14 12 10 17 17 H 1.48493 * 109.47665 * 330.00394 * 14 12 10 18 18 N 1.46504 * 109.47010 * 240.00088 * 2 1 3 19 19 C 1.34772 * 120.00096 * 84.99950 * 18 2 1 20 20 O 1.21282 * 120.00184 * 0.02562 * 19 18 2 21 21 C 1.50702 * 120.00113 * 179.97438 * 19 18 2 22 22 C 1.53000 * 109.47058 * 300.00288 * 21 19 18 23 23 C 1.52994 * 109.46746 * 60.00162 * 21 19 18 24 24 C 1.53002 * 109.47219 * 180.02562 * 21 19 18 25 25 C 1.54893 * 110.75192 * 289.10039 * 24 21 19 26 26 C 1.54272 * 104.19290 * 203.74233 * 25 24 21 27 27 C 1.53872 * 106.59857 * 23.61277 * 26 25 24 28 28 C 1.54265 * 106.59753 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46982 * 300.00109 * 1 2 3 31 31 H 1.09000 * 109.47034 * 59.99755 * 1 2 3 32 32 H 1.09003 * 109.47562 * 54.99349 * 4 2 1 33 33 H 1.09006 * 109.47380 * 294.99920 * 4 2 1 34 34 H 1.00899 * 110.99840 * 56.03937 * 5 4 2 35 35 H 1.08997 * 109.47338 * 300.00084 * 6 5 4 36 36 H 1.09002 * 109.46946 * 60.00453 * 6 5 4 37 37 H 0.97002 * 119.99525 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99766 * 179.97438 * 13 12 10 39 39 H 0.97005 * 119.99993 * 265.00115 * 18 2 1 40 40 H 1.09003 * 109.47292 * 60.00270 * 22 21 19 41 41 H 1.08997 * 109.46970 * 179.97438 * 22 21 19 42 42 H 1.08997 * 109.47164 * 299.99903 * 22 21 19 43 43 H 1.08994 * 109.47372 * 53.07946 * 23 21 19 44 44 H 1.09006 * 109.46896 * 173.07503 * 23 21 19 45 45 H 1.09002 * 109.47593 * 293.07487 * 23 21 19 46 46 H 1.08995 * 110.67347 * 52.53609 * 24 21 19 47 47 H 1.09000 * 110.48837 * 322.42554 * 25 24 21 48 48 H 1.08997 * 110.48293 * 85.06520 * 25 24 21 49 49 H 1.08998 * 110.03252 * 264.32725 * 26 25 24 50 50 H 1.08999 * 110.06995 * 142.91988 * 26 25 24 51 51 H 1.09000 * 110.03179 * 240.71723 * 27 26 25 52 52 H 1.08994 * 110.07376 * 119.30216 * 27 26 25 53 53 H 1.09001 * 110.48917 * 217.71076 * 28 27 26 54 54 H 1.08997 * 110.60105 * 95.12764 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8268 1.1904 6 6 4.0304 -1.5150 2.3767 7 6 5.5316 -1.6046 2.2807 8 8 6.1066 -1.1403 1.3189 9 7 6.2355 -2.1996 3.2640 10 6 7.6013 -2.2807 3.1770 11 1 8.1132 -1.8681 2.3202 12 6 8.3269 -2.8947 4.1905 13 7 9.6360 -2.9719 4.1072 14 14 7.4414 -3.6090 5.6721 15 1 7.0912 -5.0268 5.4033 16 1 8.3274 -3.5349 6.8615 17 1 6.2016 -2.8332 5.9294 18 7 2.0183 -0.6906 -1.1962 19 6 2.1470 -0.0183 -2.3572 20 8 1.8591 1.1586 -2.4115 21 6 2.6499 -0.7285 -3.5875 22 6 4.0526 -1.2785 -3.3214 23 6 1.7063 -1.8827 -3.9314 24 6 2.7018 0.2547 -4.7586 25 6 1.2731 0.6215 -5.2311 26 6 1.4619 1.0677 -6.6957 27 6 2.7598 0.4074 -7.1926 28 6 3.3148 -0.4165 -6.0124 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 3.9280 0.0824 1.0823 35 1 3.7558 -0.9572 3.2720 36 1 3.6096 -2.5190 2.4308 37 1 5.7756 -2.5706 4.0334 38 1 10.1425 -3.4002 4.8150 39 1 2.2490 -1.6318 -1.1527 40 1 4.0160 -1.9790 -2.4870 41 1 4.4161 -1.7926 -4.2111 42 1 4.7248 -0.4563 -3.0763 43 1 0.6849 -1.5088 -4.0002 44 1 1.9987 -2.3187 -4.8868 45 1 1.7632 -2.6431 -3.1525 46 1 3.2630 1.1485 -4.4860 47 1 0.6187 -0.2487 -5.1786 48 1 0.8713 1.4387 -4.6320 49 1 1.5517 2.1528 -6.7468 50 1 0.6182 0.7343 -7.3000 51 1 3.4796 1.1720 -7.4848 52 1 2.5469 -0.2470 -8.0377 53 1 4.4029 -0.3571 -5.9838 54 1 2.9923 -1.4552 -6.0845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715978446.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:38 Heat of formation + Delta-G solvation = -118.415143 kcal Electronic energy + Delta-G solvation = -30617.708711 eV Core-core repulsion = 26587.330248 eV Total energy + Delta-G solvation = -4030.378462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54629 -40.29666 -39.21543 -37.63763 -36.05296 -35.50715 -34.94679 -33.73051 -31.71140 -29.79100 -29.08161 -28.47791 -28.07083 -26.63394 -25.01449 -24.31225 -22.40112 -21.44820 -21.23185 -21.03580 -20.26200 -19.56716 -18.09449 -17.63352 -17.50625 -16.92630 -16.59218 -16.36527 -16.12097 -15.85992 -15.65745 -15.33690 -15.16299 -14.85577 -14.66000 -14.58963 -14.31500 -14.27322 -14.05350 -13.79554 -13.39787 -13.16758 -13.13433 -13.02579 -12.92302 -12.79749 -12.72991 -12.65600 -12.40748 -12.36083 -11.99224 -11.98007 -11.86124 -11.84470 -11.74439 -11.50417 -11.38124 -11.25865 -11.10774 -10.49643 -10.41584 -10.24127 -9.91359 -9.34197 -8.40817 -6.01781 1.30432 1.36342 1.45110 1.78566 1.97541 2.23564 2.33148 2.72724 3.15628 3.39682 3.56063 3.67094 3.77864 3.84188 4.00210 4.11232 4.12833 4.17842 4.25241 4.35193 4.41177 4.48504 4.57950 4.58365 4.63149 4.66341 4.73766 4.77052 4.77546 4.80227 4.81359 4.85130 4.92314 4.97629 5.02418 5.09268 5.14704 5.16454 5.19456 5.28486 5.29787 5.37537 5.43013 5.52977 5.56983 5.60554 5.67215 5.90221 6.03943 6.29211 6.60356 6.71544 6.89203 7.40879 7.40900 7.98246 8.76964 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.002296 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.566932 B =12189.846070 C =13419.754063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.057 0.943 4 C 0.056 3.944 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.614 6.614 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.277 1.277 17 H -0.230 1.230 18 N -0.700 5.700 19 C 0.520 3.480 20 O -0.585 6.585 21 C -0.068 4.068 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.067 4.067 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.338 0.662 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.052 0.948 50 H 0.074 0.926 51 H 0.057 0.943 52 H 0.077 0.923 53 H 0.062 0.938 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.912 -0.417 -12.832 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.075 0.925 4 C -0.073 4.073 5 N -0.313 5.313 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.457 4.457 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.203 1.203 17 H -0.154 1.154 18 N -0.350 5.350 19 C 0.307 3.693 20 O -0.465 6.465 21 C -0.071 4.071 22 C -0.194 4.194 23 C -0.196 4.196 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.156 4.156 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.076 0.924 52 H 0.096 0.904 53 H 0.081 0.919 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.551 0.094 -13.793 28.161 hybrid contribution 0.729 0.417 1.649 1.850 sum -23.822 0.512 -12.145 26.744 Atomic orbital electron populations 1.22033 0.93260 1.03203 1.02365 1.20946 0.94822 0.96118 0.84314 0.92513 1.22375 0.86635 1.02249 0.96072 1.60065 1.05488 1.26322 1.39419 1.21645 0.89320 1.02585 0.93370 1.21062 0.90870 0.81461 0.83067 1.90561 1.72982 1.51836 1.34486 1.42030 1.06072 1.54082 1.21149 1.18984 0.82032 1.37382 1.07286 0.92885 1.26151 0.96208 0.97360 1.01888 1.69812 1.07547 1.44451 1.35847 0.85339 0.79387 0.79790 0.76816 1.17992 1.20256 1.15360 1.45841 1.66023 1.14536 1.08615 1.20946 0.76242 0.86687 0.85434 1.90633 1.52334 1.17717 1.85841 1.20720 0.97330 0.96933 0.92103 1.21839 0.93881 1.00602 1.03090 1.21987 0.98185 0.95814 1.03644 1.21841 0.97090 0.96369 0.93303 1.22469 0.96362 1.01047 0.95661 1.22128 0.98308 0.99940 0.95746 1.22120 0.96619 0.99197 0.98102 1.22516 0.99921 1.00117 0.93053 0.90570 0.90218 0.93819 0.88083 0.92041 0.84407 0.90657 0.86117 0.77448 0.91190 0.75366 0.91837 0.89716 0.94697 0.91797 0.89596 0.91000 0.93308 0.90224 0.93586 0.92901 0.90742 0.92385 0.90404 0.91914 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.48 71.98 0.68 -1.65 16 2 C 0.14 2.88 2.82 44.99 0.13 3.00 16 3 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 4 C 0.06 0.97 5.24 86.30 0.45 1.43 16 5 N -0.68 -18.14 5.85 -517.94 -3.03 -21.17 16 6 C 0.06 1.74 6.17 85.56 0.53 2.27 16 7 C 0.45 19.51 7.82 87.66 0.69 20.19 16 8 O -0.61 -33.56 15.78 -3.08 -0.05 -33.61 16 9 N -0.59 -27.19 5.09 -306.98 -1.56 -28.75 16 10 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 11 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 13 N -0.94 -56.34 13.96 21.66 0.30 -56.04 16 14 Si 0.97 38.12 27.74 68.60 1.90 40.02 16 15 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 16 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 18 N -0.70 -14.99 4.60 -442.53 -2.03 -17.02 16 19 C 0.52 13.37 6.27 87.66 0.55 13.91 16 20 O -0.58 -19.40 14.46 -3.04 -0.04 -19.45 16 21 C -0.07 -1.39 0.45 -52.93 -0.02 -1.41 16 22 C -0.14 -3.02 8.08 71.98 0.58 -2.44 16 23 C -0.14 -1.96 7.46 71.98 0.54 -1.43 16 24 C -0.07 -1.43 1.84 -9.51 -0.02 -1.45 16 25 C -0.12 -2.35 5.56 31.67 0.18 -2.17 16 26 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 27 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 28 C -0.12 -1.94 4.89 31.66 0.15 -1.79 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.34 10.72 8.43 -89.69 -0.76 9.97 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 38 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.41 7.71 7.58 -92.70 -0.70 7.01 16 40 H 0.06 1.42 7.57 -2.39 -0.02 1.41 16 41 H 0.08 1.53 7.07 -2.39 -0.02 1.51 16 42 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.90 6.38 -2.39 -0.02 0.89 16 44 H 0.09 0.96 6.11 -2.38 -0.01 0.95 16 45 H 0.07 0.86 7.76 -2.39 -0.02 0.84 16 46 H 0.05 1.35 7.91 -2.39 -0.02 1.34 16 47 H 0.08 1.35 5.58 -2.39 -0.01 1.34 16 48 H 0.05 1.16 7.33 -2.39 -0.02 1.14 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.06 1.07 8.01 -2.39 -0.02 1.05 16 54 H 0.09 1.13 6.03 -2.39 -0.01 1.12 16 Total: -1.00 -79.96 416.04 0.52 -79.44 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -1.14 Total: 50.25 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.18 Total: 6.33 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.32 Total: -122.98 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.09 Total: -53.05 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -79.96 0.52 -79.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715978446.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds