Wall clock time and date at job start Sat Apr 11 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47191 * 2 1 4 4 C 1.53000 * 109.47368 * 239.99894 * 2 1 3 5 5 N 1.46898 * 109.47555 * 184.99747 * 4 2 1 6 6 C 1.46899 * 111.00305 * 293.95533 * 5 4 2 7 7 C 1.46898 * 110.99993 * 169.99841 * 5 4 2 8 8 C 1.50702 * 109.47100 * 189.99922 * 7 5 4 9 9 O 1.21285 * 119.99961 * 0.28160 * 8 7 5 10 10 N 1.34783 * 119.99990 * 179.97438 * 8 7 5 11 11 C 1.37091 * 120.00066 * 180.02562 * 10 8 7 12 12 H 1.08009 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00087 * 180.02562 * 11 10 8 14 14 N 1.31407 * 119.99676 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00053 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47289 * 59.99538 * 15 13 11 17 17 H 1.48491 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46897 * 300.00115 * 15 13 11 19 19 N 1.46505 * 109.47493 * 120.00105 * 2 1 3 20 20 C 1.34778 * 119.99800 * 275.00265 * 19 2 1 21 21 O 1.21279 * 120.00048 * 359.97438 * 20 19 2 22 22 C 1.50699 * 119.99890 * 179.97438 * 20 19 2 23 23 H 1.09000 * 110.01572 * 27.10173 * 22 20 19 24 24 C 1.54263 * 110.03471 * 148.49516 * 22 20 19 25 25 C 1.54882 * 104.19805 * 142.89328 * 24 22 20 26 26 C 1.54890 * 102.75085 * 322.06044 * 25 24 22 27 27 C 1.53876 * 110.03204 * 265.66511 * 22 20 19 28 28 C 1.52996 * 110.03151 * 359.97438 * 27 22 20 29 29 C 1.52998 * 110.03413 * 121.43263 * 27 22 20 30 30 H 1.09000 * 109.47051 * 299.99697 * 1 2 3 31 31 H 1.08997 * 109.47319 * 60.00065 * 1 2 3 32 32 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46887 * 64.99968 * 4 2 1 34 34 H 1.09005 * 109.47041 * 305.00548 * 4 2 1 35 35 H 1.08999 * 109.47391 * 296.04785 * 6 5 4 36 36 H 1.09006 * 109.46897 * 56.04237 * 6 5 4 37 37 H 1.09000 * 109.47190 * 176.04408 * 6 5 4 38 38 H 1.09003 * 109.47030 * 70.00200 * 7 5 4 39 39 H 1.08997 * 109.47781 * 310.00559 * 7 5 4 40 40 H 0.97000 * 119.99820 * 0.02562 * 10 8 7 41 41 H 0.97000 * 119.99296 * 179.97438 * 14 13 11 42 42 H 0.97003 * 119.99789 * 94.99417 * 19 2 1 43 43 H 1.09005 * 110.49015 * 261.57714 * 24 22 20 44 44 H 1.09002 * 110.48618 * 24.08257 * 24 22 20 45 45 H 1.09004 * 110.75477 * 80.37413 * 25 24 22 46 46 H 1.08999 * 110.75638 * 203.74456 * 25 24 22 47 47 H 1.08996 * 110.49041 * 156.61811 * 26 25 24 48 48 H 1.09000 * 110.48204 * 279.13237 * 26 25 24 49 49 H 1.09001 * 109.47183 * 58.70932 * 28 27 22 50 50 H 1.09002 * 109.47193 * 178.71000 * 28 27 22 51 51 H 1.09004 * 109.47305 * 298.71055 * 28 27 22 52 52 H 1.08996 * 109.47335 * 59.99671 * 29 27 22 53 53 H 1.08999 * 109.46875 * 179.97438 * 29 27 22 54 54 H 1.09003 * 109.46935 * 299.99494 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.1310 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9937 -2.0079 9 8 6.0353 -1.5057 -1.0508 10 7 6.1527 -2.7907 -2.8556 11 6 7.4823 -3.0452 -2.6392 12 1 7.9846 -2.6074 -1.7892 13 6 8.1837 -3.8665 -3.5135 14 7 7.5724 -4.3996 -4.5474 15 14 9.9952 -4.2138 -3.2182 16 1 10.1646 -4.8691 -1.8965 17 1 10.5076 -5.1105 -4.2852 18 1 10.7537 -2.9372 -3.2386 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0183 2.3572 21 8 1.8590 1.1586 2.4115 22 6 2.6489 -0.7288 3.5877 23 1 3.2862 -1.5655 3.3016 24 6 3.4350 0.2528 4.4811 25 6 3.0663 -0.1690 5.9250 26 6 1.5673 -0.5390 5.8008 27 6 1.4614 -1.2323 4.4268 28 6 0.1430 -0.8534 3.7493 29 6 1.5468 -2.7503 4.5978 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6053 -1.7198 -1.2952 35 1 3.9101 0.9467 -2.2411 36 1 3.7380 1.1364 -0.4797 37 1 5.2101 0.3987 -1.1558 38 1 3.8856 -1.2338 -3.2158 39 1 3.4544 -2.6516 -2.2300 40 1 5.7015 -3.1843 -3.6188 41 1 8.0622 -4.9726 -5.1578 42 1 2.2490 -1.6318 1.1526 43 1 4.5069 0.1459 4.3144 44 1 3.1206 1.2787 4.2892 45 1 3.6529 -1.0332 6.2367 46 1 3.2030 0.6619 6.6171 47 1 1.2762 -1.2239 6.5971 48 1 0.9495 0.3586 5.8261 49 1 0.1098 -1.2880 2.7502 50 1 -0.6910 -1.2341 4.3390 51 1 0.0708 0.2317 3.6761 52 1 2.4774 -3.0072 5.1037 53 1 0.7022 -3.0969 5.1934 54 1 1.5216 -3.2283 3.6185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716041165.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:55 Heat of formation + Delta-G solvation = -109.853847 kcal Electronic energy + Delta-G solvation = -31214.245507 eV Core-core repulsion = 27184.238290 eV Total energy + Delta-G solvation = -4030.007217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.63204 -40.37928 -39.13531 -37.98924 -36.08108 -35.48251 -33.25495 -33.14160 -32.26838 -29.87021 -29.47852 -28.24860 -27.97849 -26.64409 -25.68745 -24.12427 -22.71603 -21.37883 -21.25313 -20.94109 -19.83423 -19.64511 -18.08453 -17.75935 -17.16082 -16.70183 -16.55704 -16.44555 -16.22883 -15.73936 -15.64300 -15.40176 -15.12470 -14.99119 -14.67856 -14.44437 -14.16924 -13.96678 -13.74669 -13.65657 -13.46791 -13.31394 -13.12763 -12.93856 -12.88683 -12.80404 -12.65521 -12.58994 -12.44961 -12.39355 -12.29483 -12.12493 -11.94304 -11.71304 -11.69394 -11.51990 -11.43662 -11.42424 -11.34761 -10.60639 -10.25436 -9.97518 -9.89093 -9.20528 -8.44799 -5.92732 1.40033 1.41931 1.52316 1.77604 2.09580 2.28565 2.35593 2.76909 3.22600 3.44239 3.51553 3.60193 3.73997 3.81208 4.14361 4.19379 4.22050 4.34072 4.34756 4.40056 4.41941 4.44427 4.48911 4.53554 4.55019 4.56954 4.59485 4.70332 4.73666 4.78755 4.80051 4.83585 4.91390 5.01278 5.02835 5.05777 5.10548 5.17078 5.18967 5.21169 5.28635 5.35780 5.38031 5.42661 5.43313 5.55427 5.67331 5.88560 6.06542 6.19442 6.63866 6.71927 7.16028 7.41253 7.60359 8.16872 8.72438 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002625 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.050649 B =10664.307126 C =11830.843839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.047 3.953 5 N -0.527 5.527 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.575 5.575 11 C -0.330 4.330 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.274 1.274 19 N -0.701 5.701 20 C 0.530 3.470 21 O -0.587 6.587 22 C -0.108 4.108 23 H 0.094 0.906 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.111 4.111 27 C -0.049 4.049 28 C -0.146 4.146 29 C -0.137 4.137 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.408 0.592 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.041 0.959 52 H 0.061 0.939 53 H 0.070 0.930 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 3.049 13.229 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.080 4.080 5 N -0.251 5.251 6 C -0.116 4.116 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.500 6.500 10 N -0.213 5.213 11 C -0.460 4.460 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.199 1.199 19 N -0.351 5.351 20 C 0.318 3.682 21 O -0.468 6.468 22 C -0.130 4.130 23 H 0.112 0.888 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.049 4.049 28 C -0.203 4.203 29 C -0.194 4.194 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.244 0.756 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.080 0.920 53 H 0.089 0.911 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.628 3.859 14.156 22.936 hybrid contribution 0.965 -0.158 -1.450 1.749 sum -16.663 3.701 12.707 21.280 Atomic orbital electron populations 1.22055 0.93309 1.03153 1.02454 1.20927 0.94555 0.96231 0.84055 0.92150 1.22573 0.86351 1.02521 0.96590 1.61484 1.05513 1.11370 1.46716 1.22329 1.00528 0.89483 0.99283 1.21769 0.92134 0.99409 0.93999 1.20812 0.89949 0.82202 0.84087 1.90475 1.71644 1.55271 1.32570 1.41925 1.09848 1.43737 1.25814 1.19586 0.86642 1.28602 1.11182 0.90473 1.25973 1.04193 0.96011 0.95004 1.69660 1.38854 1.33016 1.14699 0.85047 0.77266 0.78267 0.78128 1.19670 1.19551 1.19947 1.45910 1.66088 1.14393 1.08715 1.20647 0.75949 0.86611 0.85042 1.90616 1.52784 1.17698 1.85717 1.22157 0.98614 0.99122 0.93069 0.88801 1.22336 0.98996 0.98719 0.95472 1.22458 0.96369 1.01568 0.95010 1.22478 0.96383 1.00130 0.95870 1.21045 0.92723 0.96641 0.94525 1.22055 0.96850 1.00784 1.00656 1.21920 1.02679 0.92466 1.02335 0.93476 0.90297 0.90714 0.91948 0.87927 0.95305 0.92047 0.92755 0.91618 0.86536 0.77058 0.91377 0.75619 0.92001 0.92078 0.90320 0.90792 0.89631 0.92215 0.92376 0.91101 0.93951 0.91980 0.91093 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 2 C 0.15 3.24 2.36 44.99 0.11 3.35 16 3 H 0.06 1.67 6.15 -2.39 -0.01 1.65 16 4 C 0.05 0.98 4.52 86.30 0.39 1.37 16 5 N -0.53 -15.71 4.22 -927.04 -3.91 -19.63 16 6 C 0.03 1.06 9.01 127.69 1.15 2.21 16 7 C 0.06 1.86 5.45 85.56 0.47 2.32 16 8 C 0.44 20.32 7.50 87.66 0.66 20.97 16 9 O -0.61 -33.08 13.90 -3.05 -0.04 -33.12 16 10 N -0.58 -28.84 5.29 -306.98 -1.62 -30.46 16 11 C -0.33 -18.54 9.68 84.04 0.81 -17.72 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 14 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 15 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 N -0.70 -16.37 4.37 -442.53 -1.93 -18.31 16 20 C 0.53 14.21 4.67 87.66 0.41 14.62 16 21 O -0.59 -19.74 14.55 -3.03 -0.04 -19.78 16 22 C -0.11 -2.43 2.94 -10.82 -0.03 -2.46 16 23 H 0.09 2.06 7.67 -2.39 -0.02 2.05 16 24 C -0.12 -2.74 6.32 31.67 0.20 -2.54 16 25 C -0.12 -2.01 6.91 31.88 0.22 -1.79 16 26 C -0.11 -1.80 5.90 31.67 0.19 -1.61 16 27 C -0.05 -0.85 0.94 -51.46 -0.05 -0.90 16 28 C -0.15 -2.67 7.22 71.98 0.52 -2.15 16 29 C -0.14 -1.90 8.15 71.98 0.59 -1.31 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.14 8.12 -2.38 -0.02 1.12 16 34 H 0.10 1.69 7.93 -2.38 -0.02 1.67 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.99 6.40 -2.38 -0.02 1.98 16 37 H 0.05 2.27 5.89 -2.39 -0.01 2.26 16 38 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 39 H 0.12 3.11 7.93 -2.39 -0.02 3.09 16 40 H 0.40 18.79 7.90 -92.71 -0.73 18.05 16 41 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.41 8.74 8.60 -92.71 -0.80 7.94 16 43 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.06 1.71 6.89 -2.39 -0.02 1.69 16 45 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.07 7.84 -2.39 -0.02 1.05 16 48 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 49 H 0.06 1.05 7.10 -2.39 -0.02 1.04 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.04 0.99 6.92 -2.38 -0.02 0.97 16 52 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -70.02 419.13 0.89 -69.13 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -0.64 Total: 44.08 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.78 Total: 12.28 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -7.19 Total: -117.32 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.09 Total: -52.90 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.02 0.89 -69.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716041165.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.727 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds