Wall clock time and date at job start Sat Apr 11 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47564 * 2 1 4 4 C 1.53002 * 109.46910 * 239.99796 * 2 1 3 5 5 N 1.46902 * 109.46707 * 185.00194 * 4 2 1 6 6 C 1.46894 * 111.00073 * 293.95266 * 5 4 2 7 7 C 1.46907 * 110.99692 * 169.99837 * 5 4 2 8 8 C 1.50696 * 109.47013 * 189.99862 * 7 5 4 9 9 O 1.21295 * 120.00314 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99857 * 180.02562 * 8 7 5 11 11 C 1.37095 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00404 * 0.02562 * 11 10 8 13 13 C 1.38956 * 120.00227 * 179.72232 * 11 10 8 14 14 N 1.31413 * 119.99804 * 0.27882 * 13 11 10 15 15 Si 1.86794 * 120.00491 * 180.27835 * 13 11 10 16 16 H 1.48496 * 109.47292 * 89.99912 * 15 13 11 17 17 H 1.48502 * 109.47409 * 210.00486 * 15 13 11 18 18 H 1.48506 * 109.46704 * 329.99956 * 15 13 11 19 19 N 1.46500 * 109.47037 * 120.00147 * 2 1 3 20 20 C 1.34784 * 119.99690 * 274.99603 * 19 2 1 21 21 O 1.21275 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99741 * 179.97438 * 20 19 2 23 23 H 1.09004 * 110.01866 * 332.45357 * 22 20 19 24 24 C 1.54265 * 110.03253 * 211.00933 * 22 20 19 25 25 C 1.54892 * 104.19604 * 217.11087 * 24 22 20 26 26 C 1.54892 * 102.75118 * 37.93897 * 25 24 22 27 27 C 1.53876 * 110.02852 * 93.84248 * 22 20 19 28 28 C 1.53004 * 110.03187 * 238.56858 * 27 22 20 29 29 C 1.53002 * 110.03347 * 359.95329 * 27 22 20 30 30 H 1.08999 * 109.47043 * 59.99790 * 1 2 3 31 31 H 1.08994 * 109.47564 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46628 * 300.00507 * 1 2 3 33 33 H 1.08997 * 109.46762 * 65.00257 * 4 2 1 34 34 H 1.08999 * 109.46921 * 305.00291 * 4 2 1 35 35 H 1.08996 * 109.47326 * 296.04968 * 6 5 4 36 36 H 1.08995 * 109.47157 * 56.04875 * 6 5 4 37 37 H 1.09000 * 109.47308 * 176.04904 * 6 5 4 38 38 H 1.09001 * 109.46663 * 69.99999 * 7 5 4 39 39 H 1.08991 * 109.47163 * 310.00282 * 7 5 4 40 40 H 0.97002 * 120.00171 * 359.97438 * 10 8 7 41 41 H 0.96995 * 120.00139 * 179.97438 * 14 13 11 42 42 H 0.96997 * 120.00421 * 94.99206 * 19 2 1 43 43 H 1.08999 * 110.48632 * 335.78413 * 24 22 20 44 44 H 1.08994 * 110.48755 * 98.43046 * 24 22 20 45 45 H 1.09005 * 110.75507 * 279.62952 * 25 24 22 46 46 H 1.09001 * 110.91895 * 156.33276 * 25 24 22 47 47 H 1.08997 * 110.49122 * 203.38152 * 26 25 24 48 48 H 1.09005 * 110.59660 * 80.79264 * 26 25 24 49 49 H 1.08992 * 109.46916 * 60.00114 * 28 27 22 50 50 H 1.09000 * 109.46554 * 180.02562 * 28 27 22 51 51 H 1.08996 * 109.47104 * 299.99550 * 28 27 22 52 52 H 1.08995 * 109.47336 * 61.36689 * 29 27 22 53 53 H 1.08999 * 109.47015 * 181.37208 * 29 27 22 54 54 H 1.09007 * 109.46642 * 301.36326 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.1310 0.4992 -1.2719 7 6 4.0107 -1.7146 -2.2454 8 6 5.4724 -1.9939 -2.0078 9 8 6.0365 -1.5023 -1.0531 10 7 6.1528 -2.7902 -2.8560 11 6 7.4827 -3.0439 -2.6401 12 1 7.9850 -2.6061 -1.7901 13 6 8.1829 -3.8694 -3.5113 14 7 7.5717 -4.4025 -4.5453 15 14 9.9929 -4.2214 -3.2129 16 1 10.1282 -5.4271 -2.3566 17 1 10.6720 -4.4583 -4.5121 18 1 10.6177 -3.0585 -2.5326 19 7 2.0183 -0.6906 1.1962 20 6 2.1471 -0.0182 2.3572 21 8 1.8583 1.1584 2.4117 22 6 2.6489 -0.7288 3.5878 23 1 2.4025 -1.7892 3.5328 24 6 2.0217 -0.1042 4.8512 25 6 3.1604 -0.1451 5.9004 26 6 4.4164 0.1811 5.0547 27 6 4.1714 -0.5473 3.7171 28 6 4.8627 -1.9122 3.7294 29 6 4.6993 0.2967 2.5552 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1583 -2.1369 34 1 1.6053 -1.7198 -1.2951 35 1 3.9102 0.9465 -2.2410 36 1 3.7381 1.1363 -0.4797 37 1 5.2101 0.3986 -1.1557 38 1 3.8857 -1.2340 -3.2157 39 1 3.4544 -2.6517 -2.2298 40 1 5.7017 -3.1837 -3.6192 41 1 8.0605 -4.9785 -5.1537 42 1 2.2489 -1.6318 1.1527 43 1 1.7181 0.9246 4.6577 44 1 1.1713 -0.6971 5.1879 45 1 3.2409 -1.1372 6.3447 46 1 3.0067 0.6103 6.6711 47 1 5.3135 -0.2034 5.5399 48 1 4.5017 1.2559 4.8938 49 1 4.6423 -2.4394 2.8013 50 1 5.9398 -1.7730 3.8217 51 1 4.4985 -2.4964 4.5745 52 1 4.2375 1.2836 2.5838 53 1 5.7809 0.3989 2.6425 54 1 4.4555 -0.1914 1.6115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716041166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:00 Heat of formation + Delta-G solvation = -108.871746 kcal Electronic energy + Delta-G solvation = -31791.041951 eV Core-core repulsion = 27761.077321 eV Total energy + Delta-G solvation = -4029.964630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.61603 -40.34582 -39.12222 -37.98654 -36.05614 -35.45002 -33.22939 -33.14553 -32.23484 -29.85737 -29.46665 -28.24325 -27.98139 -26.64124 -25.69416 -24.05835 -22.71011 -21.38950 -21.21130 -20.91344 -19.81711 -19.65719 -18.03510 -17.72230 -17.13824 -16.71784 -16.56040 -16.40980 -16.19400 -15.79210 -15.57879 -15.43554 -15.04673 -14.96995 -14.63264 -14.40924 -14.16361 -14.00289 -13.77968 -13.63878 -13.45064 -13.29042 -13.11874 -12.93027 -12.88383 -12.79271 -12.64394 -12.60509 -12.42157 -12.37369 -12.30547 -12.12550 -11.91559 -11.69484 -11.67683 -11.49734 -11.42085 -11.40008 -11.33488 -10.60284 -10.21760 -9.95208 -9.87424 -9.18921 -8.43760 -5.91134 1.38431 1.42139 1.54039 1.78794 2.11922 2.29101 2.36920 2.78007 3.23980 3.46249 3.53239 3.63456 3.74896 3.81864 4.15150 4.21064 4.23130 4.35229 4.36692 4.42658 4.43204 4.44121 4.49554 4.54443 4.55811 4.57293 4.60446 4.71543 4.77269 4.78154 4.80580 4.82977 4.91986 5.02134 5.03881 5.07678 5.09705 5.17942 5.22149 5.23826 5.30178 5.38116 5.42555 5.44139 5.45383 5.53136 5.68997 5.89993 6.08005 6.20530 6.65445 6.73649 7.17845 7.42983 7.62567 8.19036 8.73790 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.003121 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.796323 B = 8969.210346 C =10695.611096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.047 3.953 5 N -0.522 5.522 6 C 0.033 3.967 7 C 0.057 3.943 8 C 0.443 3.557 9 O -0.608 6.608 10 N -0.577 5.577 11 C -0.327 4.327 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.988 3.012 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.275 1.275 19 N -0.702 5.702 20 C 0.528 3.472 21 O -0.587 6.587 22 C -0.104 4.104 23 H 0.108 0.892 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.047 4.047 28 C -0.134 4.134 29 C -0.144 4.144 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.395 0.605 41 H 0.276 0.724 42 H 0.408 0.592 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.047 0.953 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.041 0.959 53 H 0.043 0.957 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.283 3.784 12.799 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.081 4.081 5 N -0.246 5.246 6 C -0.115 4.115 7 C -0.074 4.074 8 C 0.231 3.769 9 O -0.493 6.493 10 N -0.215 5.215 11 C -0.456 4.456 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.564 5.564 15 Si 0.812 3.188 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.352 5.352 20 C 0.316 3.684 21 O -0.468 6.468 22 C -0.125 4.125 23 H 0.126 0.874 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.047 4.047 28 C -0.191 4.191 29 C -0.202 4.202 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.228 0.772 41 H 0.085 0.915 42 H 0.244 0.756 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.060 0.940 53 H 0.062 0.938 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.920 4.606 13.731 20.793 hybrid contribution 0.967 -0.207 -1.582 1.866 sum -13.952 4.399 12.149 19.016 Atomic orbital electron populations 1.22048 0.93380 1.03153 1.02381 1.20916 0.94496 0.96238 0.84117 0.92173 1.22572 0.86506 1.02486 0.96531 1.61494 1.05337 1.11234 1.46542 1.22327 1.00602 0.89506 0.99090 1.21768 0.92282 0.99357 0.93965 1.20781 0.89878 0.82188 0.84088 1.90483 1.71484 1.54849 1.32516 1.41928 1.09796 1.43979 1.25809 1.19605 0.86637 1.28218 1.11166 0.90453 1.25953 1.04083 0.96121 0.95091 1.69666 1.38798 1.33045 1.14857 0.85001 0.77412 0.78577 0.77816 1.19643 1.19777 1.19963 1.45917 1.66036 1.14448 1.08765 1.20691 0.75479 0.86826 0.85361 1.90618 1.52682 1.17641 1.85852 1.22139 0.95881 1.01389 0.93122 0.87413 1.22322 0.98484 1.01130 0.92820 1.22450 0.93152 1.02640 0.96869 1.22497 0.99222 0.99461 0.94176 1.20992 0.92190 0.96143 0.95411 1.21873 0.99970 0.95129 1.02113 1.22018 1.00194 0.99233 0.98732 0.90336 0.90710 0.93585 0.92066 0.87944 0.95606 0.92103 0.92604 0.91805 0.86659 0.77159 0.91465 0.75586 0.92066 0.89851 0.89776 0.90574 0.90551 0.92768 0.93357 0.93212 0.90421 0.93989 0.93814 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 2 C 0.15 3.21 2.36 44.99 0.11 3.32 16 3 H 0.06 1.65 6.15 -2.39 -0.01 1.63 16 4 C 0.05 0.95 4.52 86.30 0.39 1.34 16 5 N -0.52 -15.16 4.22 -927.07 -3.92 -19.07 16 6 C 0.03 1.08 9.01 127.69 1.15 2.23 16 7 C 0.06 1.81 5.45 85.55 0.47 2.28 16 8 C 0.44 20.03 7.51 87.66 0.66 20.69 16 9 O -0.61 -31.93 13.89 -3.08 -0.04 -31.97 16 10 N -0.58 -28.65 5.29 -306.98 -1.62 -30.28 16 11 C -0.33 -18.19 9.68 84.04 0.81 -17.37 16 12 H 0.08 4.62 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 14 N -0.92 -49.23 13.05 21.67 0.28 -48.94 16 15 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 N -0.70 -16.06 4.34 -442.53 -1.92 -17.98 16 20 C 0.53 13.85 4.67 87.66 0.41 14.26 16 21 O -0.59 -19.44 14.57 -3.01 -0.04 -19.49 16 22 C -0.10 -2.23 2.94 -10.82 -0.03 -2.26 16 23 H 0.11 1.87 7.67 -2.38 -0.02 1.85 16 24 C -0.11 -2.11 6.31 31.67 0.20 -1.91 16 25 C -0.11 -1.85 6.91 31.89 0.22 -1.63 16 26 C -0.12 -2.38 5.90 31.67 0.19 -2.20 16 27 C -0.05 -1.10 0.94 -51.45 -0.05 -1.15 16 28 C -0.13 -3.01 8.14 71.98 0.59 -2.42 16 29 C -0.14 -4.42 7.22 71.98 0.52 -3.90 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.10 1.66 7.93 -2.39 -0.02 1.64 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.95 6.40 -2.39 -0.02 1.93 16 37 H 0.06 2.30 5.88 -2.39 -0.01 2.28 16 38 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 39 H 0.12 3.04 7.93 -2.39 -0.02 3.02 16 40 H 0.39 18.67 7.90 -92.71 -0.73 17.93 16 41 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.41 8.51 8.60 -92.71 -0.80 7.72 16 43 H 0.06 1.48 6.89 -2.39 -0.02 1.47 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 48 H 0.05 1.25 7.82 -2.38 -0.02 1.23 16 49 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.04 1.38 6.95 -2.39 -0.02 1.36 16 53 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 54 H 0.06 2.01 7.08 -2.38 -0.02 2.00 16 Total: -1.00 -68.88 419.09 0.90 -67.98 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -0.64 Total: 45.88 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.78 Total: 9.15 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -7.17 Total: -116.27 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.88 0.90 -67.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716041166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.892 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds