Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99952 * 2 1 3 5 5 N 1.46903 * 109.47162 * 184.99881 * 4 2 1 6 6 C 1.46895 * 110.99931 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47076 * 180.02562 * 6 5 4 8 8 O 1.21294 * 119.99621 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99886 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99607 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00548 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99997 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99710 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00229 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47125 * 90.00241 * 14 12 10 16 16 H 1.48503 * 109.47437 * 209.99997 * 14 12 10 17 17 H 1.48498 * 109.47462 * 330.00179 * 14 12 10 18 18 N 1.46503 * 109.47290 * 119.99914 * 2 1 3 19 19 C 1.34774 * 120.00323 * 275.00357 * 18 2 1 20 20 O 1.21288 * 119.99592 * 359.97438 * 19 18 2 21 21 C 1.50695 * 120.00122 * 179.97438 * 19 18 2 22 22 C 1.52993 * 109.46707 * 59.98813 * 21 19 18 23 23 C 1.52989 * 109.47372 * 164.01945 * 22 21 19 24 24 C 1.53013 * 109.46522 * 75.94240 * 23 22 21 25 25 C 1.52988 * 109.45936 * 284.05508 * 24 23 22 26 26 C 1.52982 * 109.49823 * 315.98779 * 25 24 23 27 27 C 1.53013 * 109.47549 * 112.94076 * 26 25 24 28 28 C 1.52987 * 109.46590 * 180.02562 * 21 19 18 29 29 H 1.09002 * 109.47281 * 300.00150 * 1 2 3 30 30 H 1.08998 * 109.46867 * 60.00024 * 1 2 3 31 31 H 1.08993 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47011 * 304.99981 * 4 2 1 33 33 H 1.08999 * 109.46848 * 65.00310 * 4 2 1 34 34 H 1.00896 * 111.00226 * 303.96180 * 5 4 2 35 35 H 1.08999 * 109.47349 * 300.00508 * 6 5 4 36 36 H 1.09005 * 109.46738 * 60.00451 * 6 5 4 37 37 H 0.96998 * 120.00183 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99668 * 180.02562 * 13 12 10 39 39 H 0.97004 * 119.99590 * 94.99219 * 18 2 1 40 40 H 1.09002 * 109.46603 * 299.99773 * 21 19 18 41 41 H 1.09004 * 109.46559 * 284.01451 * 22 21 19 42 42 H 1.09001 * 109.46935 * 44.01337 * 22 21 19 43 43 H 1.09003 * 109.46934 * 315.94761 * 23 22 21 44 44 H 1.09000 * 109.47592 * 195.94255 * 23 22 21 45 45 H 1.09003 * 109.47454 * 164.05727 * 24 23 22 46 46 H 1.08999 * 109.47727 * 44.05033 * 24 23 22 47 47 H 1.09008 * 109.46843 * 195.98116 * 25 24 23 48 48 H 1.08999 * 109.46323 * 75.99803 * 25 24 23 49 49 H 1.08995 * 109.47348 * 352.94003 * 26 25 24 50 50 H 1.09002 * 109.47182 * 232.93920 * 26 25 24 51 51 H 1.09004 * 109.47712 * 164.04965 * 27 26 25 52 52 H 1.09007 * 109.47336 * 44.03025 * 27 26 25 53 53 H 1.09000 * 109.46982 * 247.06685 * 28 21 19 54 54 H 1.08998 * 109.46663 * 7.06889 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8267 -1.1905 6 6 4.0303 -1.5159 -2.3762 7 6 5.5316 -1.6055 -2.2802 8 8 6.1065 -1.1412 -1.3183 9 7 6.2353 -2.2014 -3.2631 10 6 7.6011 -2.2824 -3.1760 11 1 8.1131 -1.8690 -2.3196 12 6 8.3266 -2.8972 -4.1890 13 7 7.7036 -3.4006 -5.2309 14 14 10.1875 -3.0082 -4.0701 15 1 10.5650 -4.2657 -3.3761 16 1 10.7722 -3.0016 -5.4351 17 1 10.7049 -1.8458 -3.3044 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0183 2.3572 20 8 1.8590 1.1586 2.4115 21 6 2.6489 -0.7289 3.5877 22 6 4.0512 -1.2800 3.3220 23 6 4.7175 -1.6410 4.6510 24 6 4.1276 -2.9508 5.1780 25 6 2.7385 -2.6857 5.7617 26 6 2.7768 -1.4162 6.6145 27 6 1.9329 -0.3280 5.9476 28 6 2.6998 0.2541 4.7589 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1370 34 1 3.9280 0.0825 -1.0823 35 1 3.6094 -2.5200 -2.4295 36 1 3.7557 -0.9588 -3.2719 37 1 5.7756 -2.5723 -4.0324 38 1 8.2101 -3.8302 -5.9379 39 1 2.2490 -1.6318 1.1526 40 1 1.9759 -1.5507 3.8325 41 1 3.9791 -2.1708 2.6979 42 1 4.6474 -0.5247 2.8099 43 1 4.5397 -0.8454 5.3745 44 1 5.7902 -1.7609 4.4990 45 1 4.7769 -3.3555 5.9544 46 1 4.0475 -3.6680 4.3610 47 1 2.4375 -3.5306 6.3813 48 1 2.0221 -2.5569 4.9504 49 1 3.8067 -1.0716 6.7071 50 1 2.3753 -1.6315 7.6048 51 1 1.7243 0.4629 6.6681 52 1 0.9943 -0.7588 5.5987 53 1 3.7376 0.4250 5.0450 54 1 2.2448 1.1986 4.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716403653.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -112.031137 kcal Electronic energy + Delta-G solvation = -30639.639585 eV Core-core repulsion = 26609.537954 eV Total energy + Delta-G solvation = -4030.101631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.44966 -40.16282 -39.45242 -37.72016 -36.02622 -35.11551 -33.99317 -33.69735 -33.24884 -31.76635 -28.95809 -27.96170 -26.76859 -26.68178 -24.67779 -23.40500 -22.80766 -21.82983 -21.02540 -20.77941 -20.23372 -19.89991 -18.41380 -17.92774 -17.39057 -16.63799 -16.50273 -16.35044 -16.04282 -15.95350 -15.65798 -15.26431 -15.07318 -14.99587 -14.87782 -14.63475 -14.42016 -14.25701 -14.04507 -13.72929 -13.52633 -13.29610 -13.08656 -13.01082 -12.86684 -12.79548 -12.70261 -12.46285 -12.41796 -12.13314 -12.03217 -11.98350 -11.82475 -11.70784 -11.66309 -11.50467 -11.22863 -10.96446 -10.78188 -10.45782 -10.34046 -10.00998 -9.95127 -9.34593 -8.46948 -5.95217 1.37368 1.41304 1.53653 1.73887 2.06577 2.28326 2.34303 2.90461 3.20754 3.51992 3.63578 3.76793 3.83355 3.91221 4.13977 4.17763 4.22220 4.24121 4.31188 4.33167 4.34503 4.36316 4.39719 4.51266 4.53815 4.59532 4.65181 4.76040 4.79994 4.84076 4.92209 4.98414 5.02696 5.03753 5.09391 5.12044 5.20932 5.23812 5.27321 5.38431 5.40815 5.40845 5.45257 5.52021 5.58508 5.67365 5.71368 5.87430 6.09291 6.30692 6.60637 6.68674 7.13222 7.37432 7.57274 8.12937 8.70451 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.002572 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.687430 B =10883.108168 C =12761.731564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.059 0.941 4 C 0.055 3.945 5 N -0.676 5.676 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.274 1.274 18 N -0.700 5.700 19 C 0.511 3.489 20 O -0.588 6.588 21 C -0.101 4.101 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.112 4.112 28 C -0.121 4.121 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.338 0.662 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.411 0.589 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.064 0.936 53 H 0.074 0.926 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 -0.010 16.592 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.074 4.074 5 N -0.308 5.308 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.199 1.199 18 N -0.350 5.350 19 C 0.299 3.701 20 O -0.470 6.470 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.173 4.173 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.149 4.149 28 C -0.158 4.158 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.139 0.861 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.083 0.917 53 H 0.092 0.908 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.301 0.446 17.438 23.875 hybrid contribution 1.001 0.215 -1.491 1.808 sum -15.300 0.661 15.947 22.110 Atomic orbital electron populations 1.22040 0.93234 1.03195 1.02472 1.20942 0.94839 0.96139 0.84213 0.92293 1.22373 0.86870 1.02071 0.96129 1.60055 1.05294 1.26147 1.39308 1.21544 0.90346 1.01795 0.92948 1.20932 0.90652 0.82394 0.83529 1.90506 1.72829 1.52973 1.34571 1.41928 1.06804 1.51817 1.20588 1.19627 0.83142 1.36822 1.06572 0.90509 1.26004 1.04759 0.95891 0.94573 1.69666 1.38223 1.38526 1.09705 0.84967 0.77048 0.78737 0.77844 1.19573 1.19556 1.19916 1.45849 1.65901 1.14566 1.08689 1.21163 0.76175 0.86874 0.85867 1.90615 1.52807 1.17882 1.85657 1.21639 0.98794 0.99459 0.92227 1.21487 0.93767 1.00382 0.98312 1.22055 0.99098 0.99437 0.96724 1.21615 0.96887 0.96541 1.00405 1.21845 0.97047 0.97842 0.99496 1.21831 1.00729 0.94960 0.98838 1.21657 0.98288 0.98429 0.96521 1.21798 1.01725 0.98312 0.94002 0.93591 0.90198 0.90677 0.88432 0.92313 0.84387 0.87209 0.91676 0.76959 0.91321 0.75328 0.86073 0.91184 0.94265 0.88985 0.92795 0.91661 0.92081 0.91403 0.91292 0.91026 0.91380 0.91612 0.91695 0.90812 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 71.98 0.68 -1.87 16 2 C 0.14 3.10 2.82 44.99 0.13 3.23 16 3 H 0.06 1.59 7.58 -2.39 -0.02 1.58 16 4 C 0.05 1.09 5.24 86.30 0.45 1.55 16 5 N -0.68 -19.65 5.85 -517.91 -3.03 -22.68 16 6 C 0.07 2.10 6.17 85.56 0.53 2.62 16 7 C 0.44 20.26 7.82 87.66 0.69 20.95 16 8 O -0.62 -34.04 15.78 -3.07 -0.05 -34.09 16 9 N -0.57 -28.95 5.29 -306.98 -1.62 -30.57 16 10 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 14 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 N -0.70 -15.72 4.70 -442.52 -2.08 -17.80 16 19 C 0.51 13.39 7.05 87.66 0.62 14.01 16 20 O -0.59 -19.76 14.80 -3.06 -0.05 -19.81 16 21 C -0.10 -2.06 2.08 -11.55 -0.02 -2.08 16 22 C -0.10 -2.26 4.87 30.59 0.15 -2.11 16 23 C -0.14 -2.56 5.33 30.60 0.16 -2.40 16 24 C -0.12 -1.79 5.71 30.59 0.17 -1.62 16 25 C -0.13 -1.62 5.48 30.58 0.17 -1.45 16 26 C -0.13 -1.64 5.47 30.59 0.17 -1.47 16 27 C -0.11 -1.69 5.59 30.59 0.17 -1.52 16 28 C -0.12 -2.46 5.06 30.58 0.15 -2.31 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.34 11.34 8.43 -89.70 -0.76 10.58 16 35 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 38 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.41 8.20 8.43 -92.71 -0.78 7.42 16 40 H 0.12 1.99 4.69 -2.39 -0.01 1.98 16 41 H 0.07 1.55 7.75 -2.38 -0.02 1.53 16 42 H 0.04 1.11 8.03 -2.39 -0.02 1.09 16 43 H 0.09 1.61 2.83 -2.39 -0.01 1.60 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.98 7.82 -2.39 -0.02 0.96 16 47 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.07 0.90 4.69 -2.39 -0.01 0.88 16 49 H 0.07 0.98 5.47 -2.39 -0.01 0.97 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 52 H 0.06 0.94 7.47 -2.38 -0.02 0.93 16 53 H 0.07 1.50 5.47 -2.39 -0.01 1.49 16 54 H 0.06 1.59 6.30 -2.39 -0.02 1.58 16 Total: -1.00 -70.22 409.75 -0.36 -70.58 By element: Atomic # 1 Polarization: 52.43 SS G_CDS: -1.34 Total: 51.10 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.50 Total: 7.40 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.45 Total: -120.01 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.09 Total: -53.90 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -70.22 -0.36 -70.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716403653.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.451 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds