Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46931 * 2 1 4 4 C 1.53000 * 109.46611 * 119.99779 * 2 1 3 5 5 N 1.46910 * 109.46896 * 174.99745 * 4 2 1 6 6 C 1.46901 * 110.99892 * 66.04324 * 5 4 2 7 7 C 1.46898 * 110.99990 * 190.00095 * 5 4 2 8 8 C 1.50696 * 109.46655 * 170.00157 * 7 5 4 9 9 O 1.21291 * 120.00745 * 0.02562 * 8 7 5 10 10 N 1.34784 * 119.99512 * 179.97438 * 8 7 5 11 11 C 1.37101 * 119.99854 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99980 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99771 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00297 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46966 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47139 * 120.00035 * 15 13 11 18 18 H 1.48505 * 109.47200 * 240.00144 * 15 13 11 19 19 N 1.46495 * 109.47076 * 239.99700 * 2 1 3 20 20 C 1.34780 * 120.00158 * 85.00113 * 19 2 1 21 21 O 1.21279 * 119.99723 * 359.97438 * 20 19 2 22 22 C 1.50698 * 119.99849 * 179.72685 * 20 19 2 23 23 C 1.53000 * 109.47149 * 300.27330 * 22 20 19 24 24 C 1.52999 * 109.47582 * 60.27535 * 22 20 19 25 25 C 1.53004 * 109.46876 * 180.27738 * 22 20 19 26 26 C 1.53779 * 113.61343 * 282.06687 * 25 22 20 27 27 C 1.53784 * 87.08165 * 220.01992 * 26 25 22 28 28 C 1.53777 * 87.07928 * 25.43442 * 27 26 25 29 29 H 1.09003 * 109.47028 * 300.00209 * 1 2 3 30 30 H 1.09003 * 109.47333 * 60.00034 * 1 2 3 31 31 H 1.09001 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47352 * 294.99716 * 4 2 1 33 33 H 1.08994 * 109.47452 * 55.00103 * 4 2 1 34 34 H 1.09003 * 109.46873 * 59.99960 * 6 5 4 35 35 H 1.08997 * 109.47481 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47101 * 300.00598 * 6 5 4 37 37 H 1.09005 * 109.46980 * 289.99743 * 7 5 4 38 38 H 1.08997 * 109.47395 * 50.00129 * 7 5 4 39 39 H 0.96992 * 120.00494 * 0.02562 * 10 8 7 40 40 H 0.97001 * 120.00065 * 180.02562 * 14 13 11 41 41 H 0.97006 * 120.00315 * 265.00631 * 19 2 1 42 42 H 1.08997 * 109.46997 * 60.00164 * 23 22 20 43 43 H 1.09005 * 109.47425 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.47415 * 300.00424 * 23 22 20 45 45 H 1.09002 * 109.46814 * 53.47175 * 24 22 20 46 46 H 1.09000 * 109.46961 * 173.47068 * 24 22 20 47 47 H 1.09003 * 109.46868 * 293.47129 * 24 22 20 48 48 H 1.08993 * 112.84995 * 53.37621 * 25 22 20 49 49 H 1.09000 * 113.61469 * 334.57246 * 26 25 22 50 50 H 1.08999 * 113.61154 * 105.46687 * 26 25 22 51 51 H 1.08999 * 113.61030 * 270.88244 * 27 26 25 52 52 H 1.08998 * 113.61358 * 139.98342 * 27 26 25 53 53 H 1.08997 * 113.61382 * 220.01751 * 28 27 26 54 54 H 1.08999 * 113.69539 * 89.12782 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1310 0.4992 1.2719 7 6 4.0106 -1.7145 2.2456 8 6 5.4723 -1.9938 2.0079 9 8 6.0366 -1.5015 1.0539 10 7 6.1527 -2.7900 2.8563 11 6 7.4824 -3.0446 2.6399 12 1 7.9846 -2.6069 1.7898 13 6 8.1838 -3.8658 3.5140 14 7 7.5726 -4.3988 4.5481 15 14 9.9956 -4.2121 3.2196 16 1 10.4435 -3.4988 1.9966 17 1 10.7855 -3.7409 4.3854 18 1 10.1980 -5.6726 3.0423 19 7 2.0183 -0.6906 -1.1961 20 6 2.1470 -0.0184 -2.3571 21 8 1.8582 1.1583 -2.4117 22 6 2.6552 -0.7274 -3.5860 23 6 4.0566 -1.2779 -3.3143 24 6 1.7130 -1.8811 -3.9355 25 6 2.7120 0.2571 -4.7559 26 6 1.3409 0.5348 -5.3943 27 6 2.0559 0.5023 -6.7554 28 6 3.1134 -0.3941 -6.0900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -0.1583 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.8524 0.9758 2.2119 35 1 5.2148 0.3921 1.2266 36 1 3.7910 1.1138 0.4383 37 1 3.8856 -1.2337 3.2159 38 1 3.4544 -2.6517 2.2301 39 1 5.7016 -3.1834 3.6195 40 1 8.0623 -4.9718 5.1586 41 1 2.2489 -1.6319 -1.1526 42 1 4.0162 -1.9792 -2.4808 43 1 4.4244 -1.7904 -4.2032 44 1 4.7279 -0.4560 -3.0653 45 1 0.6929 -1.5055 -4.0154 46 1 2.0139 -2.3205 -4.8866 47 1 1.7611 -2.6390 -3.1536 48 1 3.2774 1.1592 -4.5228 49 1 0.6238 -0.2748 -5.2583 50 1 0.9307 1.5121 -5.1398 51 1 2.4409 1.4724 -7.0697 52 1 1.4857 -0.0010 -7.5362 53 1 4.1342 -0.1668 -6.3970 54 1 2.8824 -1.4580 -6.1435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716488571.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -78.157155 kcal Electronic energy + Delta-G solvation = -31193.135474 eV Core-core repulsion = 27164.502728 eV Total energy + Delta-G solvation = -4028.632745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.65768 -40.40273 -39.53961 -38.14879 -36.07778 -35.54048 -34.97681 -33.24147 -31.59762 -29.47984 -28.42996 -28.00646 -26.66228 -26.63430 -26.13190 -24.59933 -23.51045 -21.54431 -20.94411 -20.92996 -19.82388 -19.36671 -18.03489 -17.59353 -17.45654 -16.64748 -16.57512 -16.40328 -16.15666 -15.98263 -15.66418 -15.55738 -15.23187 -15.06778 -14.81250 -14.22839 -14.11318 -13.79103 -13.66216 -13.65300 -13.48273 -13.27342 -13.12057 -13.07387 -12.88188 -12.78324 -12.74157 -12.64941 -12.49726 -12.43044 -12.36536 -12.26254 -12.11535 -12.01697 -11.71360 -11.43959 -11.24336 -11.21197 -10.91689 -10.44819 -10.23981 -9.96482 -9.89706 -9.20540 -8.44609 -5.92237 1.36881 1.42283 1.55793 1.79612 2.10075 2.28628 2.34798 2.76926 3.22889 3.44629 3.60204 3.71439 3.74001 3.80529 3.97893 4.06434 4.14842 4.18257 4.23302 4.30666 4.36371 4.40817 4.43936 4.54434 4.55250 4.59131 4.70078 4.70668 4.78132 4.81456 4.82752 4.86312 4.87425 4.97060 4.99711 5.05375 5.07760 5.13936 5.16548 5.21093 5.28709 5.30045 5.35671 5.43618 5.46282 5.65967 5.69584 5.89017 6.06991 6.19507 6.64260 6.72317 7.16783 7.41390 7.61075 8.17439 8.73047 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.002641 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.376539 B =10598.659754 C =12058.175314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.059 0.941 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.033 3.967 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.612 6.612 10 N -0.577 5.577 11 C -0.326 4.326 12 H 0.077 0.923 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.699 5.699 20 C 0.521 3.479 21 O -0.587 6.587 22 C -0.066 4.066 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.090 4.090 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.396 0.604 40 H 0.276 0.724 41 H 0.408 0.592 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.046 0.954 51 H 0.074 0.926 52 H 0.082 0.918 53 H 0.065 0.935 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 3.115 -13.494 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.077 0.923 4 C -0.080 4.080 5 N -0.250 5.250 6 C -0.115 4.115 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.498 6.498 10 N -0.214 5.214 11 C -0.456 4.456 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.349 5.349 20 C 0.309 3.691 21 O -0.467 6.467 22 C -0.069 4.069 23 C -0.189 4.189 24 C -0.197 4.197 25 C -0.109 4.109 26 C -0.172 4.172 27 C -0.173 4.173 28 C -0.168 4.168 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.244 0.756 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.100 0.900 53 H 0.084 0.916 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.797 3.943 -14.436 22.496 hybrid contribution 0.994 0.005 1.500 1.799 sum -15.803 3.948 -12.936 20.800 Atomic orbital electron populations 1.22044 0.93275 1.03202 1.02375 1.20928 0.94591 0.96224 0.84139 0.92288 1.22578 0.86376 1.02538 0.96538 1.61487 1.05474 1.11338 1.46684 1.22310 1.00446 0.89459 0.99282 1.21764 0.92189 0.99393 0.93999 1.20800 0.89932 0.82182 0.84053 1.90482 1.71558 1.54992 1.32742 1.41942 1.09850 1.43881 1.25766 1.19636 0.86581 1.28356 1.11048 0.90507 1.25970 1.04163 0.96103 0.95065 1.69673 1.38691 1.33151 1.14761 0.84928 0.77385 0.78238 0.78154 1.19916 1.19848 1.19596 1.45832 1.65941 1.14464 1.08635 1.20930 0.76217 0.86645 0.85322 1.90624 1.52497 1.17709 1.85881 1.20698 0.97177 0.96874 0.92145 1.21745 0.93943 1.00465 1.02782 1.21998 0.98220 0.95837 1.03608 1.22306 0.98582 0.97188 0.92865 1.23010 0.96326 1.01546 0.96350 1.22768 0.97957 1.00160 0.96452 1.23053 0.99258 1.00353 0.94104 0.90279 0.93650 0.90613 0.91928 0.87853 0.95239 0.92718 0.92368 0.91654 0.86507 0.77074 0.91430 0.75562 0.92199 0.89887 0.94760 0.91768 0.89493 0.91177 0.91811 0.88811 0.93513 0.90721 0.89971 0.91578 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 2 C 0.15 3.26 2.35 44.99 0.11 3.36 16 3 H 0.06 1.65 6.23 -2.39 -0.01 1.64 16 4 C 0.05 0.98 4.52 86.30 0.39 1.37 16 5 N -0.53 -15.60 4.22 -927.04 -3.92 -19.51 16 6 C 0.03 1.11 8.96 127.69 1.14 2.25 16 7 C 0.06 1.83 5.45 85.56 0.47 2.30 16 8 C 0.44 20.20 7.47 87.65 0.66 20.85 16 9 O -0.61 -32.71 13.91 -3.06 -0.04 -32.75 16 10 N -0.58 -28.73 5.29 -306.98 -1.62 -30.35 16 11 C -0.33 -18.23 9.68 84.04 0.81 -17.42 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 14 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 15 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 19 N -0.70 -16.38 4.60 -442.55 -2.03 -18.41 16 20 C 0.52 14.12 6.38 87.66 0.56 14.68 16 21 O -0.59 -20.12 15.43 -3.03 -0.05 -20.16 16 22 C -0.07 -1.42 0.53 -52.93 -0.03 -1.45 16 23 C -0.13 -3.11 8.22 71.98 0.59 -2.52 16 24 C -0.14 -2.13 7.37 71.98 0.53 -1.60 16 25 C -0.09 -1.98 2.43 -10.27 -0.02 -2.00 16 26 C -0.14 -2.64 7.10 31.12 0.22 -2.41 16 27 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 28 C -0.13 -2.11 6.70 31.12 0.21 -1.91 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 33 H 0.10 1.68 7.93 -2.39 -0.02 1.67 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 2.28 5.82 -2.39 -0.01 2.27 16 36 H 0.06 1.93 6.58 -2.38 -0.02 1.91 16 37 H 0.07 1.89 8.12 -2.38 -0.02 1.87 16 38 H 0.12 3.08 7.93 -2.39 -0.02 3.06 16 39 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 40 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 41 H 0.41 8.70 7.57 -92.70 -0.70 8.00 16 42 H 0.06 1.49 7.55 -2.39 -0.02 1.47 16 43 H 0.08 1.61 7.59 -2.38 -0.02 1.59 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 0.96 6.45 -2.39 -0.02 0.95 16 46 H 0.09 1.04 6.01 -2.39 -0.01 1.03 16 47 H 0.07 0.96 7.76 -2.39 -0.02 0.94 16 48 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 49 H 0.09 1.59 5.72 -2.39 -0.01 1.57 16 50 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.10 1.31 6.04 -2.39 -0.01 1.29 16 Total: -1.00 -70.55 417.66 1.15 -69.40 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.53 Total: 44.43 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 7.03 Total: 11.46 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -7.29 Total: -117.08 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.09 Total: -52.91 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -70.55 1.15 -69.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716488571.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.757 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds