Wall clock time and date at job start Sat Apr 11 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47639 * 2 1 4 4 C 1.53001 * 109.47096 * 240.00009 * 2 1 3 5 5 N 1.46503 * 109.47589 * 184.58148 * 4 2 1 6 6 C 1.34773 * 120.00433 * 184.63812 * 5 4 2 7 7 O 1.21281 * 119.99875 * 359.72557 * 6 5 4 8 8 C 1.50701 * 119.99902 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.01830 * 331.09480 * 8 6 5 10 10 C 1.54269 * 110.03008 * 209.70182 * 8 6 5 11 11 C 1.54964 * 104.16128 * 217.13776 * 10 8 6 12 12 C 1.54886 * 102.77546 * 37.89073 * 11 10 8 13 13 C 1.53870 * 110.03038 * 92.48869 * 8 6 5 14 14 C 1.53001 * 110.03456 * 238.56698 * 13 8 6 15 15 C 1.53002 * 110.03494 * 359.94925 * 13 8 6 16 16 N 1.46900 * 109.47250 * 120.00540 * 2 1 3 17 17 C 1.46906 * 110.99766 * 290.41676 * 16 2 1 18 18 C 1.46901 * 111.00443 * 54.36939 * 16 2 1 19 19 C 1.50692 * 109.47394 * 170.00252 * 18 16 2 20 20 O 1.21296 * 120.00068 * 359.97438 * 19 18 16 21 21 N 1.34783 * 119.99948 * 180.02562 * 19 18 16 22 22 C 1.37096 * 119.99854 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00093 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00263 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99404 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00233 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46859 * 90.00449 * 26 24 22 28 28 H 1.48502 * 109.46982 * 210.00247 * 26 24 22 29 29 H 1.48502 * 109.47293 * 330.00223 * 26 24 22 30 30 H 1.09005 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46806 * 299.99889 * 1 2 3 32 32 H 1.09002 * 109.46974 * 59.99756 * 1 2 3 33 33 H 1.09004 * 109.46923 * 64.58165 * 4 2 1 34 34 H 1.09003 * 109.47380 * 304.57835 * 4 2 1 35 35 H 0.97008 * 119.99759 * 4.63394 * 5 4 2 36 36 H 1.09001 * 110.48752 * 335.79075 * 10 8 6 37 37 H 1.09004 * 110.48502 * 98.42809 * 10 8 6 38 38 H 1.08997 * 110.72038 * 279.57716 * 11 10 8 39 39 H 1.08994 * 110.92298 * 156.29550 * 11 10 8 40 40 H 1.09002 * 110.48999 * 203.40628 * 12 11 10 41 41 H 1.09001 * 110.60103 * 80.81680 * 12 11 10 42 42 H 1.08998 * 109.46976 * 59.99722 * 14 13 8 43 43 H 1.08997 * 109.47208 * 179.97438 * 14 13 8 44 44 H 1.09003 * 109.46861 * 300.00107 * 14 13 8 45 45 H 1.09000 * 109.47200 * 60.34001 * 15 13 8 46 46 H 1.09000 * 109.47593 * 180.34539 * 15 13 8 47 47 H 1.09004 * 109.47038 * 300.34566 * 15 13 8 48 48 H 1.09002 * 109.46638 * 66.29586 * 17 16 2 49 49 H 1.09004 * 109.46884 * 186.29494 * 17 16 2 50 50 H 1.08993 * 109.47065 * 306.29649 * 17 16 2 51 51 H 1.09000 * 109.46928 * 290.01011 * 18 16 2 52 52 H 1.09001 * 109.46642 * 50.00077 * 18 16 2 53 53 H 0.96993 * 120.00220 * 0.02562 * 21 19 18 54 54 H 0.96992 * 119.99537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5008 -0.8176 -1.1955 6 6 4.1810 -1.3338 -2.2382 7 8 3.5834 -1.7232 -3.2190 8 6 5.6838 -1.4323 -2.1830 9 1 6.0865 -0.6424 -1.5488 10 6 6.2732 -1.3211 -3.6043 11 6 7.4670 -2.3091 -3.5981 12 6 6.9310 -3.4885 -2.7491 13 6 6.1021 -2.8096 -1.6391 14 6 6.9532 -2.6392 -0.3792 15 6 4.8613 -3.6474 -1.3235 16 7 2.0197 -0.6926 1.1994 17 6 1.7441 0.0925 2.4100 18 6 1.4420 -2.0393 1.3025 19 6 2.1443 -2.8050 2.3939 20 8 3.0385 -2.2806 3.0237 21 7 1.7794 -4.0729 2.6696 22 6 2.4188 -4.7697 3.6623 23 1 3.2150 -4.3027 4.2231 24 6 2.0424 -6.0766 3.9469 25 7 1.0738 -6.6449 3.2642 26 14 2.9129 -7.0257 5.2999 27 1 2.2104 -6.8057 6.5896 28 1 2.9047 -8.4742 4.9725 29 1 4.3158 -6.5518 5.4131 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.7452 -0.1622 -2.1373 34 1 1.6112 -1.7225 -1.2913 35 1 3.9786 -0.5098 -0.4093 36 1 5.5346 -1.6199 -4.3480 37 1 6.6189 -0.3051 -3.7954 38 1 8.3389 -1.8575 -3.1250 39 1 7.7051 -2.6382 -4.6095 40 1 7.7568 -4.0537 -2.3168 41 1 6.2991 -4.1397 -3.3529 42 1 6.3754 -2.1141 0.3813 43 1 7.2438 -3.6196 -0.0017 44 1 7.8465 -2.0625 -0.6195 45 1 4.2776 -3.7891 -2.2331 46 1 5.1677 -4.6180 -0.9335 47 1 4.2545 -3.1318 -0.5791 48 1 0.6672 0.1488 2.5692 49 1 2.2138 -0.3871 3.2688 50 1 2.1467 1.0983 2.2903 51 1 0.3805 -1.9622 1.5378 52 1 1.5668 -2.5617 0.3540 53 1 1.0651 -4.4926 2.1653 54 1 0.8113 -7.5573 3.4627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717484234.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:58 Heat of formation + Delta-G solvation = -106.578359 kcal Electronic energy + Delta-G solvation = -32050.539958 eV Core-core repulsion = 28020.674777 eV Total energy + Delta-G solvation = -4029.865181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62272 -40.57032 -39.11372 -38.32436 -35.96025 -35.23208 -33.25136 -33.12525 -32.12897 -30.34230 -29.51634 -28.30378 -27.39934 -26.66828 -25.63064 -25.01418 -22.23412 -21.82768 -21.24402 -20.53424 -19.81651 -19.45668 -18.15602 -17.89073 -17.11834 -16.86552 -16.57099 -16.42120 -16.09541 -15.77754 -15.74168 -15.35162 -15.21039 -14.94173 -14.65515 -14.45652 -14.19738 -13.95296 -13.92490 -13.79505 -13.55470 -13.46132 -13.06384 -13.00091 -12.95848 -12.85250 -12.67808 -12.43258 -12.39097 -12.35628 -12.16612 -12.13134 -11.92267 -11.78841 -11.70036 -11.53643 -11.42795 -11.41200 -11.37314 -10.68197 -10.25008 -9.97695 -9.93244 -9.17823 -8.44773 -5.92789 1.37373 1.40912 1.53360 1.72061 2.08172 2.26643 2.33736 2.80460 3.22442 3.41383 3.50266 3.60369 3.73117 3.77399 4.02091 4.17035 4.21947 4.29264 4.30645 4.35919 4.39989 4.41458 4.46165 4.50662 4.53037 4.59172 4.65132 4.67797 4.70804 4.76623 4.79741 4.86708 4.89218 4.99787 5.01463 5.03595 5.07297 5.16877 5.22888 5.24636 5.28071 5.32617 5.35695 5.42378 5.42960 5.51704 5.59345 5.89045 6.07909 6.21499 6.62237 6.68559 7.15325 7.35707 7.59077 8.14447 8.72873 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.003948 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.591512 B = 7091.058600 C = 9196.572855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 H 0.111 0.889 4 C 0.128 3.872 5 N -0.710 5.710 6 C 0.523 3.477 7 O -0.586 6.586 8 C -0.104 4.104 9 H 0.109 0.891 10 C -0.110 4.110 11 C -0.113 4.113 12 C -0.116 4.116 13 C -0.048 4.048 14 C -0.135 4.135 15 C -0.146 4.146 16 N -0.519 5.519 17 C 0.027 3.973 18 C 0.058 3.942 19 C 0.446 3.554 20 O -0.606 6.606 21 N -0.577 5.577 22 C -0.326 4.326 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.924 5.924 26 Si 0.989 3.011 27 H -0.271 1.271 28 H -0.274 1.274 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.413 0.587 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.029 0.971 49 H 0.056 0.944 50 H 0.085 0.915 51 H 0.065 0.935 52 H 0.091 0.909 53 H 0.392 0.608 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 13.523 -11.846 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.035 4.035 3 H 0.129 0.871 4 C 0.004 3.996 5 N -0.361 5.361 6 C 0.311 3.689 7 O -0.467 6.467 8 C -0.125 4.125 9 H 0.127 0.873 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.153 4.153 13 C -0.048 4.048 14 C -0.193 4.193 15 C -0.204 4.204 16 N -0.243 5.243 17 C -0.121 4.121 18 C -0.074 4.074 19 C 0.233 3.767 20 O -0.491 6.491 21 N -0.215 5.215 22 C -0.455 4.455 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.565 5.565 26 Si 0.813 3.187 27 H -0.196 1.196 28 H -0.199 1.199 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.249 0.751 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.109 0.891 53 H 0.225 0.775 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.908 13.382 -12.119 19.330 hybrid contribution -1.248 -1.048 1.064 1.946 sum 5.660 12.334 -11.055 17.504 Atomic orbital electron populations 1.22374 0.95315 1.02653 1.03771 1.22078 0.94416 0.98715 0.88243 0.87061 1.21407 0.80490 0.99972 0.97733 1.45962 1.07611 1.63162 1.19379 1.20825 0.90834 0.75404 0.81872 1.90628 1.71506 1.50195 1.34393 1.22149 0.90450 0.99429 1.00495 0.87289 1.22350 0.97706 1.00890 0.93842 1.22459 0.97363 0.94831 1.00377 1.22495 0.98880 0.98007 0.95959 1.21009 0.94731 0.92699 0.96376 1.21897 0.99737 1.02053 0.95581 1.22025 0.97794 1.00050 1.00483 1.61736 1.58536 1.00724 1.03333 1.22435 0.98877 0.98166 0.92619 1.21708 0.96741 0.91285 0.97621 1.20662 0.86292 0.82541 0.87176 1.90454 1.34356 1.69357 1.54960 1.41948 1.34279 1.11961 1.33284 1.19632 1.17059 0.95918 1.12936 0.90118 1.25999 0.97319 0.97350 1.00658 1.69686 1.29523 1.15305 1.41982 0.84979 0.78474 0.77297 0.77937 1.19642 1.19889 1.19601 0.92853 0.91367 0.89881 0.90220 0.93688 0.75082 0.91999 0.89675 0.89637 0.90445 0.90331 0.92697 0.93491 0.92952 0.90110 0.93571 0.93213 0.93782 0.95264 0.92490 0.89597 0.91731 0.89143 0.77513 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.46 71.98 0.61 -2.69 16 2 C 0.07 1.53 2.49 44.91 0.11 1.64 16 3 H 0.11 1.89 7.99 -2.39 -0.02 1.87 16 4 C 0.13 3.06 4.86 86.38 0.42 3.48 16 5 N -0.71 -17.93 4.89 -463.05 -2.27 -20.19 16 6 C 0.52 14.55 4.73 87.66 0.41 14.97 16 7 O -0.59 -20.28 14.92 -3.03 -0.05 -20.33 16 8 C -0.10 -2.33 2.94 -10.82 -0.03 -2.37 16 9 H 0.11 2.01 7.67 -2.39 -0.02 1.99 16 10 C -0.11 -2.18 6.32 31.70 0.20 -1.97 16 11 C -0.11 -1.87 6.91 31.91 0.22 -1.65 16 12 C -0.12 -2.43 5.91 31.67 0.19 -2.24 16 13 C -0.05 -1.16 0.94 -51.46 -0.05 -1.20 16 14 C -0.14 -3.11 8.14 71.98 0.59 -2.52 16 15 C -0.15 -4.62 7.21 71.98 0.52 -4.10 16 16 N -0.52 -14.68 3.85 -901.62 -3.47 -18.15 16 17 C 0.03 0.75 8.85 127.69 1.13 1.88 16 18 C 0.06 1.96 4.41 85.55 0.38 2.34 16 19 C 0.45 20.65 7.52 87.65 0.66 21.31 16 20 O -0.61 -31.58 13.88 -3.08 -0.04 -31.62 16 21 N -0.58 -29.58 5.29 -306.97 -1.62 -31.20 16 22 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.52 13.05 21.67 0.28 -50.24 16 26 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 30 H 0.05 1.10 6.56 -2.38 -0.02 1.08 16 31 H 0.07 1.20 6.81 -2.38 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.27 6.56 -2.39 -0.02 1.25 16 35 H 0.41 10.05 8.08 -92.70 -0.75 9.30 16 36 H 0.06 1.54 6.87 -2.39 -0.02 1.52 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.47 7.84 -2.39 -0.02 1.45 16 41 H 0.05 1.30 7.83 -2.39 -0.02 1.28 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.57 6.94 -2.39 -0.02 1.55 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.04 1.55 7.09 -2.39 -0.02 1.54 16 48 H 0.03 0.74 6.86 -2.39 -0.02 0.72 16 49 H 0.06 2.09 5.93 -2.38 -0.01 2.08 16 50 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 51 H 0.06 2.03 6.81 -2.39 -0.02 2.01 16 52 H 0.09 3.05 6.15 -2.39 -0.01 3.04 16 53 H 0.39 19.58 7.90 -92.71 -0.73 18.85 16 54 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.31 412.29 0.92 -67.40 By element: Atomic # 1 Polarization: 50.73 SS G_CDS: -0.58 Total: 50.15 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.64 Total: 9.05 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -7.08 Total: -119.78 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.09 Total: -51.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.31 0.92 -67.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717484234.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.182 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds