Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47318 * 2 1 4 4 C 1.53004 * 109.46978 * 120.00014 * 2 1 3 5 5 N 1.46500 * 109.46852 * 174.99942 * 4 2 1 6 6 C 1.34781 * 119.99594 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99722 * 179.97438 * 6 5 4 9 9 H 1.09006 * 110.54255 * 36.45677 * 8 6 5 10 10 C 1.54965 * 110.53111 * 159.08102 * 8 6 5 11 11 C 1.54893 * 102.77844 * 156.56445 * 10 8 6 12 12 C 1.54262 * 104.19651 * 322.08914 * 11 10 8 13 13 C 1.53874 * 106.60004 * 23.60964 * 12 11 10 14 14 C 1.52992 * 110.03654 * 119.28362 * 13 12 11 15 15 C 1.53009 * 110.03063 * 240.66749 * 13 12 11 16 16 N 1.46902 * 109.47201 * 240.00115 * 2 1 3 17 17 C 1.46907 * 110.99712 * 306.04766 * 16 2 1 18 18 C 1.46893 * 110.99967 * 69.99813 * 16 2 1 19 19 C 1.50704 * 109.47241 * 169.99915 * 18 16 2 20 20 O 1.21292 * 119.99646 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99984 * 179.97438 * 19 18 16 22 22 C 1.37095 * 119.99525 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00315 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99987 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99638 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00258 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46811 * 59.99878 * 26 24 22 28 28 H 1.48507 * 109.46973 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47087 * 299.99577 * 26 24 22 30 30 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46648 * 300.00192 * 1 2 3 32 32 H 1.09000 * 109.46808 * 59.99520 * 1 2 3 33 33 H 1.09000 * 109.47090 * 54.99885 * 4 2 1 34 34 H 1.08997 * 109.47136 * 294.99998 * 4 2 1 35 35 H 0.96996 * 120.00056 * 359.97438 * 5 4 2 36 36 H 1.09009 * 110.71587 * 38.25580 * 10 8 6 37 37 H 1.08993 * 110.92517 * 274.97685 * 10 8 6 38 38 H 1.08993 * 110.48909 * 203.40994 * 11 10 8 39 39 H 1.09005 * 110.47967 * 80.76503 * 11 10 8 40 40 H 1.08993 * 110.03557 * 264.32170 * 12 11 10 41 41 H 1.09009 * 110.03244 * 142.88969 * 12 11 10 42 42 H 1.08999 * 109.47457 * 182.09149 * 14 13 12 43 43 H 1.09004 * 109.47091 * 62.09389 * 14 13 12 44 44 H 1.08997 * 109.47262 * 302.09183 * 14 13 12 45 45 H 1.08999 * 109.46937 * 304.15905 * 15 13 12 46 46 H 1.08994 * 109.46978 * 64.15738 * 15 13 12 47 47 H 1.09000 * 109.47073 * 184.15670 * 15 13 12 48 48 H 1.09002 * 109.46794 * 59.99925 * 17 16 2 49 49 H 1.08997 * 109.46657 * 179.97438 * 17 16 2 50 50 H 1.08997 * 109.47053 * 299.99710 * 17 16 2 51 51 H 1.09005 * 109.47496 * 290.00494 * 18 16 2 52 52 H 1.09006 * 109.46881 * 50.00368 * 18 16 2 53 53 H 0.96999 * 120.00151 * 0.02562 * 21 19 18 54 54 H 0.97001 * 119.99771 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1908 7 8 3.5699 -1.8842 3.1395 8 6 5.6748 -1.5379 2.1301 9 1 6.1051 -0.6437 1.6792 10 6 6.2608 -1.7663 3.5464 11 6 7.6229 -2.4411 3.2489 12 6 7.3316 -3.3699 2.0522 13 6 6.0938 -2.7955 1.3410 14 6 6.4450 -2.4176 -0.0993 15 6 4.9597 -3.8226 1.3513 16 7 2.0197 -0.6925 -1.1995 17 6 1.4343 -2.0355 -1.3078 18 6 1.7529 0.0972 -2.4090 19 6 2.4775 -0.5162 -3.5794 20 8 3.1495 -1.5135 -3.4215 21 7 2.3778 0.0427 -4.8018 22 6 3.0365 -0.5157 -5.8666 23 1 3.6349 -1.4037 -5.7260 24 6 2.9342 0.0607 -7.1267 25 7 2.2056 1.1410 -7.2978 26 14 3.8323 -0.6997 -8.5774 27 1 3.3561 -2.0916 -8.7799 28 1 3.5621 0.0983 -9.8003 29 1 5.2922 -0.7105 -8.3054 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1584 2.1370 35 1 3.9823 -0.4628 0.4316 36 1 5.6195 -2.4299 4.1266 37 1 6.4043 -0.8188 4.0657 38 1 7.9574 -3.0208 4.1091 39 1 8.3682 -1.6929 2.9785 40 1 7.1241 -4.3800 2.4053 41 1 8.1826 -3.3794 1.3710 42 1 5.5726 -1.9779 -0.5827 43 1 6.7512 -3.3103 -0.6448 44 1 7.2615 -1.6955 -0.0967 45 1 5.3071 -4.7519 0.8999 46 1 4.6500 -4.0115 2.3791 47 1 4.1142 -3.4360 0.7823 48 1 0.3490 -1.9548 -1.3694 49 1 1.8133 -2.5257 -2.2045 50 1 1.7059 -2.6221 -0.4302 51 1 0.6814 0.1054 -2.6087 52 1 2.1026 1.1189 -2.2603 53 1 1.8400 0.8400 -4.9281 54 1 2.1339 1.5432 -8.1776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717484235.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = -107.936168 kcal Electronic energy + Delta-G solvation = -31488.080998 eV Core-core repulsion = 27458.156938 eV Total energy + Delta-G solvation = -4029.924060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.54219 -40.51768 -39.15721 -38.35437 -35.94728 -35.21402 -33.23498 -33.10493 -32.13665 -30.29727 -29.30708 -28.26752 -27.30195 -27.01330 -25.62477 -25.11221 -22.28949 -21.38062 -21.09172 -20.67963 -19.78593 -19.59263 -18.02366 -17.81559 -17.11657 -16.93149 -16.53504 -16.45754 -16.24128 -15.79181 -15.65501 -15.50322 -15.03241 -14.76210 -14.52943 -14.45252 -14.23988 -14.15310 -13.94056 -13.70039 -13.59368 -13.42000 -13.09756 -12.97909 -12.83746 -12.78605 -12.69706 -12.43112 -12.38363 -12.37877 -12.27124 -12.11651 -11.94530 -11.76099 -11.61934 -11.50110 -11.42320 -11.40157 -11.31981 -10.67276 -10.22234 -9.95472 -9.93252 -9.16205 -8.43261 -5.90874 1.40843 1.42734 1.52861 1.72973 2.11967 2.28666 2.34669 2.78652 3.24453 3.46946 3.53414 3.59665 3.75131 3.77027 4.06135 4.18493 4.27372 4.30620 4.33395 4.36937 4.39436 4.42134 4.47216 4.52341 4.56014 4.59049 4.64110 4.67931 4.73374 4.75041 4.80687 4.85717 4.90612 5.00199 5.01975 5.02701 5.10400 5.16549 5.20837 5.24127 5.29932 5.35497 5.41838 5.44157 5.44360 5.52742 5.59183 5.90705 6.09045 6.21424 6.65450 6.68739 7.17807 7.35782 7.62672 8.18748 8.74008 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.002934 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.931180 B = 9541.237724 C =11247.013849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.104 0.896 4 C 0.135 3.865 5 N -0.711 5.711 6 C 0.524 3.476 7 O -0.585 6.585 8 C -0.107 4.107 9 H 0.108 0.892 10 C -0.105 4.105 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.047 4.047 14 C -0.139 4.139 15 C -0.140 4.140 16 N -0.518 5.518 17 C 0.029 3.971 18 C 0.057 3.943 19 C 0.444 3.556 20 O -0.609 6.609 21 N -0.577 5.577 22 C -0.328 4.328 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.273 1.273 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.112 0.888 53 H 0.395 0.605 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -0.635 18.846 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.122 0.878 4 C 0.010 3.990 5 N -0.361 5.361 6 C 0.312 3.688 7 O -0.466 6.466 8 C -0.128 4.128 9 H 0.126 0.874 10 C -0.143 4.143 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.048 4.048 14 C -0.197 4.197 15 C -0.197 4.197 16 N -0.242 5.242 17 C -0.119 4.119 18 C -0.074 4.074 19 C 0.231 3.769 20 O -0.495 6.495 21 N -0.215 5.215 22 C -0.458 4.458 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.564 5.564 26 Si 0.812 3.188 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.130 0.870 53 H 0.228 0.772 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.471 -1.551 19.473 20.039 hybrid contribution -0.941 0.195 -1.629 1.892 sum 3.529 -1.356 17.843 18.240 Atomic orbital electron populations 1.22359 0.95240 1.02787 1.03636 1.22079 0.94514 0.98690 0.88516 0.87805 1.21335 0.80386 1.00150 0.97097 1.45965 1.07769 1.58991 1.23370 1.20757 0.90608 0.76086 0.81385 1.90629 1.71152 1.49644 1.35184 1.22367 0.90513 1.00544 0.99407 0.87395 1.22392 0.96573 1.01378 0.93974 1.22334 0.96361 0.98724 0.97966 1.22287 0.96346 0.99254 0.97280 1.21012 0.95595 0.93114 0.95053 1.21932 1.01519 1.01677 0.94522 1.21954 0.97652 0.99050 1.01078 1.61717 1.59004 1.02496 1.00997 1.22370 0.96736 0.90576 1.02262 1.21747 0.98693 0.98276 0.88653 1.20764 0.85415 0.86245 0.84445 1.90477 1.45598 1.28527 1.84871 1.41928 1.45089 1.27561 1.06882 1.19586 1.27433 1.11072 0.87665 0.90321 1.25962 0.98003 0.96471 1.00812 1.69664 1.40406 1.20929 1.25373 0.85060 0.78563 0.78081 0.77087 1.19906 1.19740 1.19669 0.92357 0.89937 0.91695 0.93062 0.90480 0.75246 0.91898 0.90588 0.90473 0.90203 0.91597 0.90393 0.93793 0.92723 0.91099 0.92060 0.93071 0.94346 0.94684 0.92676 0.91874 0.91569 0.87026 0.77169 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.44 71.98 0.61 -2.60 16 2 C 0.07 1.45 2.47 44.92 0.11 1.57 16 3 H 0.10 1.87 7.93 -2.39 -0.02 1.85 16 4 C 0.13 3.01 4.84 86.38 0.42 3.43 16 5 N -0.71 -16.96 5.38 -463.06 -2.49 -19.45 16 6 C 0.52 13.56 4.97 87.66 0.44 14.00 16 7 O -0.59 -18.79 15.12 -3.02 -0.05 -18.83 16 8 C -0.11 -2.24 2.71 -10.44 -0.03 -2.27 16 9 H 0.11 1.94 7.85 -2.38 -0.02 1.92 16 10 C -0.11 -1.99 6.15 31.91 0.20 -1.79 16 11 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 12 C -0.11 -1.95 6.11 31.32 0.19 -1.76 16 13 C -0.05 -1.00 0.86 -51.46 -0.04 -1.04 16 14 C -0.14 -3.18 8.15 71.98 0.59 -2.59 16 15 C -0.14 -3.53 7.15 71.99 0.51 -3.01 16 16 N -0.52 -14.60 3.89 -901.59 -3.51 -18.11 16 17 C 0.03 0.88 8.42 127.69 1.07 1.95 16 18 C 0.06 1.79 5.02 85.56 0.43 2.22 16 19 C 0.44 19.78 7.47 87.66 0.66 20.44 16 20 O -0.61 -31.49 13.91 -3.07 -0.04 -31.54 16 21 N -0.58 -28.39 5.29 -306.98 -1.62 -30.02 16 22 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 26 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 30 H 0.06 1.12 6.33 -2.39 -0.02 1.10 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.16 6.91 -2.39 -0.02 1.15 16 33 H 0.05 1.31 6.80 -2.39 -0.02 1.29 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.41 9.78 8.14 -92.71 -0.75 9.03 16 36 H 0.06 1.46 7.26 -2.38 -0.02 1.44 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 41 H 0.08 1.19 7.67 -2.38 -0.02 1.17 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.37 7.47 -2.39 -0.02 1.36 16 47 H 0.04 1.12 7.37 -2.39 -0.02 1.10 16 48 H 0.03 0.96 6.21 -2.39 -0.01 0.94 16 49 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 50 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 51 H 0.07 1.88 7.06 -2.38 -0.02 1.86 16 52 H 0.11 2.98 7.93 -2.38 -0.02 2.96 16 53 H 0.39 18.55 7.90 -92.71 -0.73 17.82 16 54 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -66.64 413.93 0.66 -65.99 By element: Atomic # 1 Polarization: 47.41 SS G_CDS: -0.59 Total: 46.82 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.65 Total: 9.52 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -7.34 Total: -116.32 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -66.64 0.66 -65.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717484235.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.951 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds