Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47045 * 2 1 4 4 C 1.53002 * 109.46834 * 240.00487 * 2 1 3 5 5 N 1.46501 * 109.46889 * 184.99477 * 4 2 1 6 6 C 1.34779 * 119.99887 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00107 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00000 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47192 * 300.00572 * 8 6 5 10 10 C 1.52999 * 109.47246 * 299.99783 * 9 8 6 11 11 C 1.52993 * 109.47199 * 300.00076 * 10 9 8 12 12 C 1.50701 * 109.47255 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99687 * 250.66781 * 12 11 10 14 14 N 1.34774 * 119.99833 * 70.66905 * 12 11 10 15 15 C 1.46501 * 119.99704 * 184.61608 * 14 12 11 16 16 C 1.46494 * 120.00240 * 4.61996 * 14 12 11 17 17 C 1.52999 * 109.47083 * 59.99825 * 11 10 9 18 18 C 1.52993 * 109.47163 * 180.02562 * 8 6 5 19 19 N 1.46498 * 109.47141 * 120.00742 * 2 1 3 20 20 C 1.46493 * 120.00555 * 60.00013 * 19 2 1 21 21 C 1.36940 * 119.99462 * 239.99930 * 19 2 1 22 22 H 1.07999 * 120.00534 * 24.34013 * 21 19 2 23 23 C 1.38816 * 119.99914 * 204.34325 * 21 19 2 24 24 N 1.31625 * 119.99709 * 11.50236 * 23 21 19 25 25 Si 1.86797 * 120.00101 * 191.50877 * 23 21 19 26 26 H 1.48497 * 109.47353 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47408 * 119.99619 * 25 23 21 28 28 H 1.48500 * 109.46865 * 239.99820 * 25 23 21 29 29 H 1.09001 * 109.47517 * 299.99177 * 1 2 3 30 30 H 1.08996 * 109.47832 * 59.99362 * 1 2 3 31 31 H 1.09007 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47351 * 304.99974 * 4 2 1 33 33 H 1.09006 * 109.47152 * 64.99836 * 4 2 1 34 34 H 0.97001 * 119.99963 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.46956 * 60.00588 * 8 6 5 36 36 H 1.09003 * 109.47376 * 60.00120 * 9 8 6 37 37 H 1.09001 * 109.46737 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.46944 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.46975 * 60.00068 * 10 9 8 40 40 H 1.09004 * 109.47151 * 299.99885 * 11 10 9 41 41 H 1.09006 * 109.46829 * 90.00418 * 15 14 12 42 42 H 1.08999 * 109.47492 * 209.99743 * 15 14 12 43 43 H 1.09004 * 109.47594 * 330.00273 * 15 14 12 44 44 H 1.08997 * 109.47178 * 355.62753 * 16 14 12 45 45 H 1.09000 * 109.47474 * 115.62182 * 16 14 12 46 46 H 1.08997 * 109.47173 * 235.62055 * 16 14 12 47 47 H 1.09003 * 109.47376 * 179.97438 * 17 11 10 48 48 H 1.09004 * 109.47077 * 60.00015 * 17 11 10 49 49 H 1.09004 * 109.47151 * 180.02562 * 18 8 6 50 50 H 1.09002 * 109.47385 * 299.99879 * 18 8 6 51 51 H 1.08993 * 109.47209 * 87.38829 * 20 19 2 52 52 H 1.08993 * 109.47450 * 207.39320 * 20 19 2 53 53 H 1.09006 * 109.46739 * 327.39229 * 20 19 2 54 54 H 0.96995 * 119.99836 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.1729 -1.4289 -2.1910 7 8 3.5698 -1.8839 -3.1397 8 6 5.6748 -1.5375 -2.1304 9 6 6.2852 -0.1360 -2.0660 10 6 5.8809 0.6542 -3.3122 11 6 6.3908 -0.0673 -4.5613 12 6 5.9931 0.7114 -5.7887 13 8 5.1412 0.2753 -6.5337 14 7 6.5841 1.8922 -6.0584 15 6 6.1279 2.6971 -7.1943 16 6 7.6828 2.3708 -5.2159 17 6 5.7804 -1.4687 -4.6257 18 6 6.1847 -2.2585 -3.3797 19 7 2.0183 -0.6908 1.1961 20 6 1.6645 -2.0933 1.4278 21 6 2.8056 -0.0253 2.0975 22 1 2.7562 1.0514 2.1662 23 6 3.6673 -0.7345 2.9229 24 7 3.8987 -2.0096 2.6924 25 14 4.4983 0.1205 4.3609 26 1 4.0751 1.5432 4.4026 27 1 4.1087 -0.5496 5.6275 28 1 5.9723 0.0476 4.1953 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7197 -1.2954 33 1 1.7515 -0.1581 -2.1371 34 1 3.9823 -0.4626 -0.4317 35 1 5.9629 -2.1005 -1.2426 36 1 5.9220 0.3780 -1.1761 37 1 7.3715 -0.2147 -2.0218 38 1 6.3162 1.6524 -3.2665 39 1 4.7946 0.7327 -3.3560 40 1 7.4772 -0.1458 -4.5175 41 1 5.3391 3.3742 -6.8662 42 1 6.9631 3.2762 -7.5882 43 1 5.7418 2.0400 -7.9736 44 1 7.8287 1.6826 -4.3834 45 1 8.5971 2.4248 -5.8069 46 1 7.4404 3.3611 -4.8305 47 1 6.1433 -1.9826 -5.5158 48 1 4.6940 -1.3902 -4.6695 49 1 7.2710 -2.3374 -3.3357 50 1 5.7499 -3.2569 -3.4260 51 1 2.3904 -2.7378 0.9321 52 1 1.6692 -2.2971 2.4985 53 1 0.6706 -2.2885 1.0251 54 1 4.5006 -2.5053 3.2693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717496008.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -80.526047 kcal Electronic energy + Delta-G solvation = -32045.385098 eV Core-core repulsion = 28016.649630 eV Total energy + Delta-G solvation = -4028.735468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.84067 -40.65396 -38.66752 -37.60910 -36.60444 -35.33913 -33.83984 -32.56963 -31.66988 -30.99532 -28.89414 -27.97993 -27.56999 -26.90259 -24.99576 -24.27172 -23.59785 -22.31211 -21.05456 -20.20783 -19.97633 -18.79413 -18.06107 -17.51126 -17.33453 -17.10675 -16.89134 -16.55464 -16.47031 -15.89998 -15.25778 -15.16696 -14.94362 -14.86540 -14.51791 -14.36524 -14.21490 -13.82891 -13.67319 -13.55645 -13.43241 -13.37567 -13.24282 -13.15223 -13.08309 -12.94609 -12.80732 -12.67882 -12.58875 -12.46225 -12.26364 -12.11170 -12.02847 -11.77731 -11.72415 -11.55791 -11.46876 -11.10176 -10.65941 -10.56219 -10.39690 -9.78055 -9.68549 -8.71808 -7.75382 -5.24148 1.51300 1.56371 1.56843 1.63637 1.84107 2.07425 2.49837 2.57276 3.39819 3.48460 3.65403 3.66564 3.72319 3.97184 4.07669 4.10159 4.15152 4.25210 4.35459 4.42229 4.42354 4.44690 4.50102 4.54064 4.59663 4.61487 4.71473 4.75756 4.80072 4.85565 4.86326 4.88725 4.92396 4.96438 5.07889 5.08448 5.09371 5.23247 5.26588 5.27471 5.30493 5.33857 5.48168 5.51820 5.59549 5.68769 5.75612 5.80921 6.33497 6.40461 6.81946 7.15254 7.21618 7.47472 7.91672 8.39774 9.27866 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003219 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.156879 B = 8696.791189 C = 9214.540464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.073 0.927 4 C 0.116 3.884 5 N -0.702 5.702 6 C 0.508 3.492 7 O -0.589 6.589 8 C -0.108 4.108 9 C -0.100 4.100 10 C -0.105 4.105 11 C -0.095 4.095 12 C 0.507 3.493 13 O -0.590 6.590 14 N -0.623 5.623 15 C 0.080 3.920 16 C 0.062 3.938 17 C -0.109 4.109 18 C -0.088 4.088 19 N -0.600 5.600 20 C 0.182 3.818 21 C -0.260 4.260 22 H 0.072 0.928 23 C -0.038 4.038 24 N -0.928 5.928 25 Si 0.960 3.040 26 H -0.269 1.269 27 H -0.303 1.303 28 H -0.289 1.289 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.410 0.590 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.131 0.869 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.050 0.950 51 H -0.008 1.008 52 H 0.026 0.974 53 H 0.015 0.985 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 9.988 -12.574 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 H 0.091 0.909 4 C -0.011 4.011 5 N -0.352 5.352 6 C 0.296 3.704 7 O -0.471 6.471 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.297 3.703 13 O -0.470 6.470 14 N -0.356 5.356 15 C -0.063 4.063 16 C -0.079 4.079 17 C -0.147 4.147 18 C -0.125 4.125 19 N -0.323 5.323 20 C 0.037 3.963 21 C -0.390 4.390 22 H 0.089 0.911 23 C -0.234 4.234 24 N -0.574 5.574 25 Si 0.790 3.210 26 H -0.194 1.194 27 H -0.230 1.230 28 H -0.216 1.216 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.148 0.852 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.121 0.879 50 H 0.069 0.931 51 H 0.010 0.990 52 H 0.045 0.955 53 H 0.034 0.966 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.225 9.392 -13.523 19.381 hybrid contribution 0.044 -0.105 1.166 1.172 sum 10.269 9.288 -12.356 18.558 Atomic orbital electron populations 1.22062 0.95479 1.01502 1.01901 1.20789 0.94001 0.95487 0.84528 0.90888 1.21746 0.80912 0.99577 0.98854 1.45913 1.07722 1.58429 1.23114 1.21183 0.91356 0.76521 0.81350 1.90579 1.71537 1.50142 1.34795 1.21418 0.89881 1.00379 1.01255 1.21533 1.03022 0.91802 0.97442 1.21561 0.99997 0.99963 0.92760 1.21341 1.03502 0.94937 0.91781 1.21276 0.80646 0.81407 0.86995 1.90671 1.34700 1.70019 1.51615 1.47929 1.36451 1.19894 1.31308 1.21710 1.01132 0.94953 0.88475 1.22276 0.88429 1.01706 0.95522 1.21469 1.02028 0.93740 0.97473 1.21284 1.01743 0.97773 0.91746 1.44032 1.57794 1.09222 1.21246 1.20392 0.93239 0.84728 0.97980 1.19513 1.14698 0.91656 1.13134 0.91053 1.25626 0.98675 0.96707 1.02423 1.70240 1.38942 1.08922 1.39279 0.85321 0.77952 0.78243 0.79520 1.19392 1.23035 1.21605 0.92534 0.90898 0.93515 0.94759 0.92434 0.75382 0.88322 0.91044 0.86830 0.88192 0.94984 0.85175 0.92750 0.88017 0.92835 0.88622 0.90050 0.90234 0.92626 0.92318 0.87904 0.93114 0.98985 0.95507 0.96625 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.17 71.98 0.66 -4.18 16 2 C 0.16 6.00 2.87 44.99 0.13 6.13 16 3 H 0.07 2.67 7.87 -2.39 -0.02 2.65 16 4 C 0.12 4.45 4.97 86.38 0.43 4.88 16 5 N -0.70 -26.94 5.28 -463.05 -2.45 -29.38 16 6 C 0.51 19.11 5.64 87.66 0.49 19.60 16 7 O -0.59 -26.16 13.66 -3.02 -0.04 -26.21 16 8 C -0.11 -3.06 3.01 -11.54 -0.03 -3.10 16 9 C -0.10 -2.11 5.35 30.59 0.16 -1.95 16 10 C -0.11 -2.28 4.62 30.59 0.14 -2.13 16 11 C -0.09 -2.10 1.66 -11.54 -0.02 -2.12 16 12 C 0.51 13.59 6.93 87.66 0.61 14.20 16 13 O -0.59 -22.03 15.54 -3.04 -0.05 -22.08 16 14 N -0.62 -11.60 3.27 -871.90 -2.85 -14.46 16 15 C 0.08 1.32 10.52 127.77 1.34 2.66 16 16 C 0.06 0.56 9.66 127.77 1.23 1.80 16 17 C -0.11 -3.19 4.27 30.58 0.13 -3.06 16 18 C -0.09 -2.27 5.09 30.58 0.16 -2.12 16 19 N -0.60 -27.31 2.28 -702.81 -1.60 -28.91 16 20 C 0.18 8.76 8.16 127.77 1.04 9.80 16 21 C -0.26 -12.73 9.30 84.03 0.78 -11.95 16 22 H 0.07 3.39 7.83 -2.91 -0.02 3.37 16 23 C -0.04 -1.93 5.08 84.86 0.43 -1.50 16 24 N -0.93 -50.23 10.76 21.65 0.23 -49.99 16 25 Si 0.96 41.33 29.57 68.60 2.03 43.36 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.55 6.68 -2.38 -0.02 1.53 16 32 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.41 16.25 7.31 -92.71 -0.68 15.57 16 35 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.07 1.63 7.57 -2.39 -0.02 1.61 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.55 6.20 -2.39 -0.01 1.53 16 39 H 0.03 0.95 7.22 -2.38 -0.02 0.93 16 40 H 0.13 1.85 7.06 -2.38 -0.02 1.83 16 41 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 43 H 0.05 1.14 7.36 -2.38 -0.02 1.12 16 44 H 0.10 0.71 4.54 -2.39 -0.01 0.70 16 45 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 2.31 5.35 -2.38 -0.01 2.30 16 49 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 50 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 51 H -0.01 -0.44 7.75 -2.39 -0.02 -0.46 16 52 H 0.03 1.40 6.86 -2.39 -0.02 1.38 16 53 H 0.02 0.67 6.43 -2.38 -0.02 0.66 16 54 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -72.27 407.75 3.16 -69.10 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.21 Total: 31.60 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 7.69 Total: 26.97 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.67 Total: -122.74 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.09 Total: -48.29 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -72.27 3.16 -69.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717496008.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.424 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds