Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21279 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47204 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47313 * 300.00086 * 7 5 4 10 10 C 1.53002 * 109.47295 * 59.99816 * 7 5 4 11 11 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 12 12 O 1.21277 * 120.00304 * 240.00314 * 11 2 1 13 13 N 1.34778 * 119.99637 * 59.99942 * 11 2 1 14 14 C 1.47421 * 125.65153 * 359.69357 * 13 11 2 15 15 C 1.55132 * 104.72628 * 155.81633 * 14 13 11 16 16 H 1.09005 * 111.19081 * 279.19807 * 15 14 13 17 17 N 1.46494 * 110.94064 * 155.28825 * 15 14 13 18 18 C 1.36936 * 119.99830 * 92.95906 * 17 15 14 19 19 H 1.07998 * 120.00072 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99998 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99913 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46894 * 90.00683 * 22 20 18 24 24 H 1.48497 * 109.47063 * 210.00243 * 22 20 18 25 25 H 1.48496 * 109.47230 * 330.00666 * 22 20 18 26 26 C 1.55160 * 101.48371 * 37.29467 * 15 14 13 27 27 C 1.52999 * 110.72195 * 205.96984 * 26 15 14 28 28 C 1.52998 * 110.71860 * 82.69577 * 26 15 14 29 29 C 1.47026 * 125.64703 * 180.02562 * 13 11 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 1.08999 * 109.46749 * 60.00120 * 8 7 5 35 35 H 1.09001 * 109.47211 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47113 * 300.00023 * 8 7 5 37 37 H 1.09001 * 109.47403 * 59.99872 * 9 7 5 38 38 H 1.09001 * 109.47524 * 180.02562 * 9 7 5 39 39 H 1.09008 * 109.46947 * 299.99858 * 9 7 5 40 40 H 1.08999 * 109.47215 * 59.99859 * 10 7 5 41 41 H 1.09001 * 109.47602 * 180.02562 * 10 7 5 42 42 H 1.09001 * 109.47011 * 299.99877 * 10 7 5 43 43 H 1.09000 * 110.36664 * 274.74714 * 14 13 11 44 44 H 1.09002 * 110.36643 * 37.07050 * 14 13 11 45 45 H 0.96995 * 120.00321 * 272.96047 * 17 15 14 46 46 H 0.97001 * 120.00330 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.47010 * 174.97660 * 27 26 15 48 48 H 1.08994 * 109.46878 * 294.97879 * 27 26 15 49 49 H 1.09006 * 109.46704 * 54.97851 * 27 26 15 50 50 H 1.08999 * 109.47396 * 305.02132 * 28 26 15 51 51 H 1.09000 * 109.47018 * 65.02157 * 28 26 15 52 52 H 1.09001 * 109.47317 * 185.02749 * 28 26 15 53 53 H 1.09000 * 109.88343 * 300.44128 * 29 13 11 54 54 H 1.08999 * 109.88003 * 61.45060 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 6 2.7009 0.2546 4.7588 9 6 1.7043 -1.8822 3.9315 10 6 4.0513 -1.2797 3.3224 11 6 2.0324 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1191 13 7 1.7068 -0.2500 -2.4545 14 6 0.8658 0.9282 -2.7337 15 6 1.2941 1.3915 -4.1509 16 1 2.2092 1.9826 -4.1124 17 7 0.2170 2.1383 -4.8054 18 6 0.1702 3.5030 -4.7037 19 1 0.9276 4.0289 -4.1415 20 6 -0.8501 4.2107 -5.3244 21 7 -1.7728 3.5698 -6.0100 22 14 -0.9143 6.0724 -5.1851 23 1 -0.1497 6.6791 -6.3043 24 1 -2.3272 6.5251 -5.2483 25 1 -0.3171 6.4930 -3.8922 26 6 1.5390 0.0330 -4.8592 27 6 2.5443 0.1915 -6.0016 28 6 0.2229 -0.5552 -5.3720 29 6 2.1259 -0.8435 -3.7327 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 1.7019 0.6475 4.9480 35 1 3.0634 -0.2594 5.6490 36 1 3.3740 1.0762 4.5137 37 1 1.6676 -2.5827 3.0971 38 1 2.0670 -2.3959 4.8218 39 1 0.7051 -1.4897 4.1206 40 1 4.7242 -0.4579 3.0775 41 1 4.4141 -1.7940 4.2123 42 1 4.0145 -1.9801 2.4880 43 1 -0.1887 0.6523 -2.7248 44 1 1.0593 1.7141 -2.0035 45 1 -0.4631 1.6660 -5.3107 46 1 -2.4860 4.0642 -6.4434 47 1 2.7688 -0.7869 -6.4264 48 1 2.1194 0.8338 -6.7729 49 1 3.4610 0.6406 -5.6191 50 1 -0.4872 -0.6294 -4.5484 51 1 -0.1865 0.0921 -6.1475 52 1 0.4049 -1.5472 -5.7852 53 1 3.2139 -0.8519 -3.7984 54 1 1.7420 -1.8605 -3.8126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717897215.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -91.726960 kcal Electronic energy + Delta-G solvation = -31421.151767 eV Core-core repulsion = 27391.930591 eV Total energy + Delta-G solvation = -4029.221176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.89831 -41.01411 -39.45046 -36.73716 -36.17241 -35.92969 -34.71622 -32.68001 -31.69675 -29.23598 -28.27270 -28.23812 -28.05440 -27.59683 -26.02479 -25.53435 -23.65179 -22.66694 -20.97784 -20.30714 -20.00729 -19.21947 -18.20854 -17.79731 -17.32600 -16.98154 -16.48954 -16.38147 -16.18153 -15.72402 -15.48750 -15.03885 -15.02298 -14.87177 -14.67601 -14.46375 -14.40839 -14.26632 -13.65690 -13.58794 -13.38613 -13.31111 -13.14868 -13.08219 -12.96313 -12.88970 -12.84992 -12.79159 -12.74325 -12.63731 -12.50413 -12.11014 -12.05884 -11.92156 -11.87734 -11.83566 -11.55601 -11.32744 -11.09115 -10.88644 -10.77066 -10.29875 -9.75572 -9.00959 -7.93891 -5.22050 1.36220 1.49304 1.50390 1.51409 1.58258 1.65686 2.23299 2.57352 3.16628 3.37018 3.52714 3.62992 3.76151 3.82038 3.84986 3.89478 3.95541 3.99836 4.12578 4.23880 4.27302 4.39612 4.43291 4.54986 4.64710 4.67251 4.70903 4.71527 4.77327 4.81689 4.82132 4.86564 4.93334 4.94150 4.98493 5.00194 5.03568 5.08086 5.11327 5.18587 5.19935 5.25831 5.29708 5.31870 5.36284 5.44102 5.50780 5.56237 6.28014 6.35555 6.42391 6.89015 7.13728 7.37120 8.08839 8.34083 9.28706 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.002940 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.208874 B = 9522.244286 C =11059.693682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.099 0.901 4 N -0.703 5.703 5 C 0.519 3.481 6 O -0.579 6.579 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.138 4.138 10 C -0.139 4.139 11 C 0.528 3.472 12 O -0.567 6.567 13 N -0.602 5.602 14 C 0.081 3.919 15 C 0.172 3.828 16 H 0.062 0.938 17 N -0.717 5.717 18 C -0.241 4.241 19 H 0.075 0.925 20 C -0.064 4.064 21 N -0.963 5.963 22 Si 0.963 3.037 23 H -0.290 1.290 24 H -0.298 1.298 25 H -0.272 1.272 26 C -0.078 4.078 27 C -0.125 4.125 28 C -0.129 4.129 29 C 0.124 3.876 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.383 0.617 46 H 0.251 0.749 47 H 0.076 0.924 48 H 0.047 0.953 49 H 0.058 0.942 50 H 0.048 0.952 51 H 0.048 0.952 52 H 0.076 0.924 53 H 0.073 0.927 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.251 -14.993 15.489 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.117 0.883 4 N -0.357 5.357 5 C 0.307 3.693 6 O -0.458 6.458 7 C -0.084 4.084 8 C -0.183 4.183 9 C -0.195 4.195 10 C -0.196 4.196 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.334 5.334 14 C -0.045 4.045 15 C 0.061 3.939 16 H 0.080 0.920 17 N -0.357 5.357 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.257 4.257 21 N -0.613 5.613 22 Si 0.793 3.207 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.197 1.197 26 C -0.080 4.080 27 C -0.183 4.183 28 C -0.186 4.186 29 C 0.002 3.998 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.219 0.781 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.095 0.905 53 H 0.092 0.908 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.464 -14.514 15.664 23.358 hybrid contribution -0.618 1.009 -0.538 1.300 sum 8.845 -13.505 15.126 22.123 Atomic orbital electron populations 1.22176 0.91887 1.03565 1.03941 1.20573 0.96460 0.97232 0.83394 0.88337 1.45761 1.66966 1.14958 1.07998 1.21354 0.76056 0.86750 0.85099 1.90692 1.51619 1.17844 1.85621 1.20873 0.98360 0.97397 0.91768 1.21672 1.02104 0.97992 0.96581 1.21890 0.98145 0.95904 1.03608 1.21891 0.92893 1.01050 1.03807 1.20305 0.79904 0.84165 0.83968 1.90642 1.39934 1.27653 1.86445 1.48343 1.50131 1.29687 1.05204 1.23410 0.94587 0.86137 1.00352 1.21549 0.91388 0.91381 0.89580 0.91993 1.42502 1.29546 1.03131 1.60561 1.19584 1.07555 0.84332 1.25841 0.90734 1.25397 0.97908 1.01531 1.00914 1.69777 1.16329 1.35614 1.39592 0.85297 0.76199 0.81365 0.77828 1.21680 1.22483 1.19741 1.21815 0.96800 0.94466 0.94898 1.21654 0.97468 1.02306 0.96826 1.21659 0.95486 1.00691 1.00766 1.22103 0.99742 0.96976 0.81011 0.90906 0.90336 0.91387 0.74686 0.93167 0.89227 0.93471 0.91459 0.88922 0.92658 0.93186 0.88798 0.91692 0.90992 0.91175 0.78133 0.94015 0.90557 0.93374 0.92314 0.93310 0.93270 0.90541 0.90823 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.29 71.98 0.67 -3.22 16 2 C 0.13 3.52 2.33 44.24 0.10 3.62 16 3 H 0.10 2.95 7.29 -2.39 -0.02 2.93 16 4 N -0.70 -16.42 4.74 -446.11 -2.11 -18.54 16 5 C 0.52 12.79 6.45 87.66 0.56 13.36 16 6 O -0.58 -18.99 15.64 -3.03 -0.05 -19.03 16 7 C -0.08 -1.34 0.87 -52.93 -0.05 -1.38 16 8 C -0.13 -2.09 7.76 71.98 0.56 -1.53 16 9 C -0.14 -1.64 8.37 71.98 0.60 -1.04 16 10 C -0.14 -1.86 8.37 71.98 0.60 -1.26 16 11 C 0.53 15.21 7.28 87.66 0.64 15.84 16 12 O -0.57 -18.01 16.16 -3.02 -0.05 -18.05 16 13 N -0.60 -17.17 3.32 -811.35 -2.69 -19.86 16 14 C 0.08 2.57 4.51 86.93 0.39 2.96 16 15 C 0.17 6.09 2.97 46.46 0.14 6.23 16 16 H 0.06 2.29 7.99 -2.38 -0.02 2.27 16 17 N -0.72 -32.40 5.15 -316.01 -1.63 -34.03 16 18 C -0.24 -12.44 9.96 84.03 0.84 -11.60 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 21 N -0.96 -55.75 13.06 21.65 0.28 -55.46 16 22 Si 0.96 44.60 29.55 68.60 2.03 46.62 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 C -0.08 -2.24 0.85 -50.99 -0.04 -2.28 16 27 C -0.13 -3.26 8.49 71.98 0.61 -2.65 16 28 C -0.13 -3.71 7.55 71.98 0.54 -3.16 16 29 C 0.12 3.27 6.04 86.73 0.52 3.79 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.05 4.98 -2.39 -0.01 2.03 16 32 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.41 8.54 6.63 -92.70 -0.61 7.92 16 34 H 0.05 0.95 8.10 -2.39 -0.02 0.94 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.07 0.73 7.57 -2.39 -0.02 0.71 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.86 7.56 -2.39 -0.02 0.84 16 43 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 44 H 0.07 2.26 7.34 -2.39 -0.02 2.25 16 45 H 0.38 18.44 5.45 -92.71 -0.51 17.94 16 46 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 50 H 0.05 1.46 7.42 -2.39 -0.02 1.44 16 51 H 0.05 1.67 6.75 -2.39 -0.02 1.65 16 52 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 54 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 Total: -1.00 -65.17 418.70 2.71 -62.46 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.23 Total: 41.26 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 7.16 Total: 14.64 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -6.15 Total: -127.89 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.10 Total: -37.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.17 2.71 -62.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717897215.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.266 kcal (2) G-P(sol) polarization free energy of solvation -65.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds