Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46655 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.46956 * 299.99469 * 7 5 4 10 10 C 1.52999 * 109.47285 * 59.99586 * 7 5 4 11 11 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 12 12 O 1.21282 * 120.00041 * 239.99948 * 11 2 1 13 13 N 1.34779 * 120.00037 * 60.00381 * 11 2 1 14 14 C 1.47423 * 125.64790 * 359.68719 * 13 11 2 15 15 C 1.55125 * 104.72302 * 155.81984 * 14 13 11 16 16 H 1.09001 * 110.90774 * 155.27492 * 15 14 13 17 17 N 1.46503 * 111.22558 * 279.18120 * 15 14 13 18 18 C 1.36930 * 119.99687 * 267.20301 * 17 15 14 19 19 H 1.08007 * 120.00418 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00276 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00439 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47343 * 90.00066 * 22 20 18 24 24 H 1.48504 * 109.47371 * 210.00017 * 22 20 18 25 25 H 1.48501 * 109.47190 * 329.99850 * 22 20 18 26 26 C 1.55166 * 101.48398 * 37.29741 * 15 14 13 27 27 C 1.52998 * 110.71646 * 205.96730 * 26 15 14 28 28 C 1.52993 * 110.87271 * 82.76807 * 26 15 14 29 29 C 1.47016 * 125.64721 * 180.02562 * 13 11 2 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 34 34 H 1.08999 * 109.47446 * 60.00274 * 8 7 5 35 35 H 1.09002 * 109.46778 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47105 * 299.99335 * 8 7 5 37 37 H 1.09003 * 109.47335 * 60.00558 * 9 7 5 38 38 H 1.09002 * 109.46959 * 180.02562 * 9 7 5 39 39 H 1.08999 * 109.47559 * 299.99979 * 9 7 5 40 40 H 1.09007 * 109.46839 * 60.00066 * 10 7 5 41 41 H 1.09002 * 109.46731 * 179.97438 * 10 7 5 42 42 H 1.08990 * 109.47403 * 299.99973 * 10 7 5 43 43 H 1.09000 * 110.36737 * 274.75059 * 14 13 11 44 44 H 1.09003 * 110.36552 * 37.07227 * 14 13 11 45 45 H 0.97000 * 120.00215 * 87.20951 * 17 15 14 46 46 H 0.96998 * 119.99941 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.46881 * 174.97614 * 27 26 15 48 48 H 1.08994 * 109.47347 * 294.97496 * 27 26 15 49 49 H 1.09005 * 109.47415 * 54.97849 * 27 26 15 50 50 H 1.09003 * 109.47266 * 304.93718 * 28 26 15 51 51 H 1.09007 * 109.47403 * 64.93057 * 28 26 15 52 52 H 1.09000 * 109.47500 * 184.93772 * 28 26 15 53 53 H 1.09004 * 109.88620 * 300.43089 * 29 13 11 54 54 H 1.08997 * 109.88891 * 61.44921 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 6 2.7010 0.2545 4.7587 9 6 1.7043 -1.8823 3.9314 10 6 4.0513 -1.2799 3.3223 11 6 2.0323 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1191 13 7 1.7068 -0.2500 -2.4546 14 6 0.8657 0.9282 -2.7337 15 6 1.2940 1.3915 -4.1509 16 1 0.4922 1.9468 -4.6374 17 7 2.5237 2.1863 -4.1000 18 6 2.4536 3.5505 -4.0055 19 1 1.4919 4.0406 -3.9681 20 6 3.6187 4.3037 -3.9579 21 7 4.7908 3.7065 -4.0040 22 14 3.5232 6.1647 -3.8283 23 1 3.5035 6.5610 -2.3972 24 1 4.7060 6.7686 -4.4928 25 1 2.2842 6.6442 -4.4918 26 6 1.5389 0.0328 -4.8592 27 6 2.5441 0.1915 -6.0016 28 6 0.2251 -0.5576 -5.3750 29 6 2.1258 -0.8436 -3.7326 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 1.7021 0.6474 4.9481 35 1 3.0636 -0.2595 5.6489 36 1 3.3742 1.0759 4.5137 37 1 1.6675 -2.5827 3.0971 38 1 2.0670 -2.3959 4.8218 39 1 0.7052 -1.4897 4.1206 40 1 4.7242 -0.4581 3.0774 41 1 4.4144 -1.7934 4.2125 42 1 4.0145 -1.9803 2.4880 43 1 -0.1887 0.6523 -2.7248 44 1 1.0593 1.7141 -2.0035 45 1 3.3874 1.7461 -4.1333 46 1 5.6049 4.2328 -3.9704 47 1 2.7686 -0.7869 -6.4265 48 1 2.1192 0.8337 -6.7729 49 1 3.4609 0.6405 -5.6192 50 1 -0.4864 -0.6343 -4.5527 51 1 -0.1845 0.0898 -6.1505 52 1 0.4099 -1.5487 -5.7891 53 1 3.2138 -0.8519 -3.7985 54 1 1.7419 -1.8605 -3.8127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717897218.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -93.032219 kcal Electronic energy + Delta-G solvation = -31845.832564 eV Core-core repulsion = 27816.554787 eV Total energy + Delta-G solvation = -4029.277776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.87738 -41.01317 -39.41619 -36.74982 -36.16670 -35.74781 -34.72773 -32.60230 -31.69753 -29.57252 -28.26232 -28.07455 -27.95759 -27.56938 -26.03582 -25.38180 -23.61807 -22.75642 -20.97716 -20.38593 -20.02558 -19.09572 -18.20063 -17.82790 -17.19900 -16.96675 -16.75007 -16.26982 -16.12865 -15.75585 -15.51880 -15.01421 -14.95314 -14.91961 -14.73821 -14.44110 -14.41149 -13.86792 -13.68201 -13.53821 -13.35900 -13.26242 -13.12732 -13.08194 -13.01084 -12.89667 -12.84938 -12.75897 -12.73392 -12.66274 -12.54345 -12.15092 -12.05653 -11.94586 -11.90016 -11.79693 -11.45929 -11.30280 -11.06665 -10.91475 -10.77856 -10.29482 -9.72962 -8.96527 -7.94351 -5.21879 1.38727 1.46401 1.48263 1.53157 1.55292 1.70271 2.27919 2.55364 3.22709 3.37146 3.51339 3.63138 3.79995 3.83605 3.85038 3.88030 3.96866 4.01955 4.07820 4.23821 4.33127 4.46568 4.54081 4.63199 4.66169 4.67574 4.69210 4.74166 4.78397 4.79627 4.87902 4.90871 4.91502 4.92081 4.98025 4.99797 5.07243 5.09963 5.15191 5.16335 5.23323 5.29500 5.31503 5.32570 5.35649 5.44614 5.53499 5.62948 6.26830 6.40707 6.43712 6.93924 7.13212 7.34401 8.09882 8.31201 9.28901 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.003663 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.598019 B = 7642.123151 C = 9443.684178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.517 3.483 6 O -0.580 6.580 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.135 4.135 10 C -0.141 4.141 11 C 0.523 3.477 12 O -0.577 6.577 13 N -0.595 5.595 14 C 0.072 3.928 15 C 0.165 3.835 16 H 0.087 0.913 17 N -0.720 5.720 18 C -0.234 4.234 19 H 0.084 0.916 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.964 3.036 23 H -0.296 1.296 24 H -0.301 1.301 25 H -0.263 1.263 26 C -0.077 4.077 27 C -0.122 4.122 28 C -0.124 4.124 29 C 0.122 3.878 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.372 0.628 46 H 0.247 0.753 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.071 0.929 53 H 0.038 0.962 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 -15.332 9.360 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.357 5.357 5 C 0.305 3.695 6 O -0.460 6.460 7 C -0.084 4.084 8 C -0.183 4.183 9 C -0.193 4.193 10 C -0.198 4.198 11 C 0.312 3.688 12 O -0.458 6.458 13 N -0.326 5.326 14 C -0.054 4.054 15 C 0.055 3.945 16 H 0.105 0.895 17 N -0.359 5.359 18 C -0.365 4.365 19 H 0.102 0.898 20 C -0.265 4.265 21 N -0.620 5.620 22 Si 0.794 3.206 23 H -0.224 1.224 24 H -0.228 1.228 25 H -0.187 1.187 26 C -0.078 4.078 27 C -0.180 4.180 28 C -0.182 4.182 29 C 0.000 4.000 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.205 0.795 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.050 0.950 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.090 0.910 53 H 0.056 0.944 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.518 -14.843 9.486 21.047 hybrid contribution 1.284 1.053 -0.069 1.662 sum -10.234 -13.790 9.417 19.585 Atomic orbital electron populations 1.22155 0.90540 1.03915 1.04277 1.20592 0.97471 0.96471 0.83229 0.89839 1.45768 1.67043 1.14886 1.08045 1.21399 0.76084 0.86736 0.85236 1.90687 1.51731 1.17838 1.85710 1.20880 0.98183 0.97600 0.91733 1.21673 1.02193 0.97884 0.96579 1.21871 0.98130 0.95650 1.03609 1.21903 0.93208 1.00887 1.03826 1.20382 0.79936 0.84164 0.84351 1.90623 1.40113 1.28432 1.86632 1.48266 1.50043 1.29484 1.04764 1.23572 0.94795 0.86311 1.00680 1.21736 0.89707 0.90934 0.92151 0.89483 1.42531 1.03522 1.02792 1.87024 1.19662 0.92754 0.84052 1.40064 0.89800 1.25461 0.95247 1.01746 1.04052 1.69823 0.97039 1.35488 1.59676 0.85274 0.77044 0.81286 0.76985 1.22408 1.22778 1.18708 1.21890 0.97685 0.94363 0.93873 1.21573 0.97992 1.01273 0.97140 1.21728 0.93840 1.01108 1.01490 1.22064 0.98383 0.97361 0.82202 0.89292 0.91418 0.90364 0.74782 0.92772 0.89010 0.93995 0.91465 0.88818 0.92235 0.93864 0.88456 0.91860 0.87757 0.92166 0.79487 0.94403 0.91334 0.92269 0.94957 0.91413 0.91251 0.91025 0.94387 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.29 71.98 0.67 -2.89 16 2 C 0.13 4.03 2.33 44.24 0.10 4.14 16 3 H 0.08 3.15 7.29 -2.39 -0.02 3.14 16 4 N -0.70 -19.53 4.74 -446.10 -2.11 -21.65 16 5 C 0.52 14.97 6.45 87.66 0.56 15.54 16 6 O -0.58 -21.72 15.64 -3.01 -0.05 -21.77 16 7 C -0.08 -1.63 0.87 -52.93 -0.05 -1.67 16 8 C -0.13 -2.50 7.76 71.98 0.56 -1.94 16 9 C -0.14 -1.87 8.37 71.98 0.60 -1.26 16 10 C -0.14 -2.57 8.37 71.98 0.60 -1.96 16 11 C 0.52 17.78 7.28 87.66 0.64 18.42 16 12 O -0.58 -21.94 16.16 -3.04 -0.05 -21.99 16 13 N -0.59 -19.07 3.32 -811.37 -2.69 -21.76 16 14 C 0.07 2.15 4.53 86.93 0.39 2.54 16 15 C 0.17 5.60 2.96 46.46 0.14 5.73 16 16 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 17 N -0.72 -33.58 4.57 -316.00 -1.44 -35.02 16 18 C -0.23 -12.22 9.96 84.04 0.84 -11.38 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 21 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 22 Si 0.96 46.02 29.55 68.60 2.03 48.05 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 C -0.08 -2.12 0.80 -50.99 -0.04 -2.16 16 27 C -0.12 -3.72 8.15 71.98 0.59 -3.13 16 28 C -0.12 -2.39 8.44 71.98 0.61 -1.79 16 29 C 0.12 3.75 6.03 86.73 0.52 4.28 16 30 H 0.09 1.92 4.98 -2.39 -0.01 1.90 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.41 10.28 6.63 -92.71 -0.61 9.66 16 34 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.07 0.86 7.57 -2.39 -0.02 0.84 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.15 7.56 -2.39 -0.02 1.14 16 43 H 0.10 2.30 6.65 -2.39 -0.02 2.29 16 44 H 0.06 2.12 7.34 -2.39 -0.02 2.10 16 45 H 0.37 19.55 6.32 -92.71 -0.59 18.97 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.03 1.24 6.34 -2.38 -0.02 1.23 16 50 H 0.07 1.15 7.44 -2.39 -0.02 1.14 16 51 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 54 H 0.08 2.18 7.85 -2.39 -0.02 2.16 16 Total: -1.00 -72.64 419.15 2.85 -69.79 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.31 Total: 44.65 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.20 Total: 18.82 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -5.97 Total: -137.55 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.10 Total: -43.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.64 2.85 -69.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717897218.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.242 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds