Wall clock time and date at job start Sat Apr 11 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47237 * 2 1 4 4 C 1.53006 * 109.47098 * 240.00298 * 2 1 3 5 5 N 1.46906 * 109.46886 * 65.00328 * 4 2 1 6 6 C 1.46896 * 111.00084 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47496 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99762 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99957 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00361 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99740 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00116 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47285 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47019 * 119.99892 * 14 12 10 17 17 H 1.48497 * 109.46940 * 239.99379 * 14 12 10 18 18 C 1.52994 * 109.47195 * 120.00407 * 2 1 3 19 19 N 1.46493 * 109.47562 * 295.00095 * 18 2 1 20 20 C 1.34778 * 120.00435 * 180.02562 * 19 18 2 21 21 O 1.21276 * 119.99711 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99943 * 179.97438 * 20 19 18 23 23 C 1.53006 * 109.47166 * 59.99975 * 22 20 19 24 24 C 1.53004 * 109.47235 * 300.00174 * 22 20 19 25 25 C 1.52994 * 109.47070 * 179.97438 * 22 20 19 26 26 C 1.53782 * 113.61614 * 182.98244 * 25 22 20 27 27 C 1.53777 * 87.08321 * 139.98073 * 26 25 22 28 28 C 1.53780 * 113.61439 * 280.47824 * 25 22 20 29 29 H 1.08998 * 109.46859 * 299.99511 * 1 2 3 30 30 H 1.09000 * 109.46985 * 59.99942 * 1 2 3 31 31 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47358 * 184.99713 * 4 2 1 33 33 H 1.08993 * 109.47447 * 305.00422 * 4 2 1 34 34 H 1.00901 * 111.00099 * 56.03967 * 5 4 2 35 35 H 1.08999 * 109.46839 * 300.00030 * 6 5 4 36 36 H 1.09008 * 109.46958 * 59.99336 * 6 5 4 37 37 H 0.97004 * 120.00036 * 0.02562 * 9 7 6 38 38 H 0.96994 * 120.00496 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.47396 * 174.99590 * 18 2 1 40 40 H 1.09002 * 109.47135 * 55.00542 * 18 2 1 41 41 H 0.97009 * 119.99872 * 359.97438 * 19 18 2 42 42 H 1.09000 * 109.47138 * 173.34901 * 23 22 20 43 43 H 1.08999 * 109.47289 * 293.34670 * 23 22 20 44 44 H 1.08995 * 109.46886 * 53.34503 * 23 22 20 45 45 H 1.08997 * 109.46573 * 299.99791 * 24 22 20 46 46 H 1.08995 * 109.47256 * 60.00244 * 24 22 20 47 47 H 1.09005 * 109.46729 * 180.02562 * 24 22 20 48 48 H 1.09003 * 112.91029 * 51.72721 * 25 22 20 49 49 H 1.09004 * 113.61364 * 25.42656 * 26 25 22 50 50 H 1.09008 * 113.68838 * 254.54097 * 26 25 22 51 51 H 1.08997 * 113.61446 * 89.11586 * 27 26 25 52 52 H 1.08999 * 113.61414 * 220.01583 * 27 26 25 53 53 H 1.08994 * 113.61838 * 105.46744 * 28 25 22 54 54 H 1.09008 * 113.61642 * 334.56496 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0376 -2.4457 6 6 2.1247 -0.6268 -3.6673 7 6 1.7078 0.1785 -4.8710 8 8 1.0778 1.2047 -4.7254 9 7 2.0348 -0.2417 -6.1090 10 6 1.6551 0.4906 -7.2040 11 1 1.0941 1.4044 -7.0745 12 6 1.9918 0.0572 -8.4806 13 7 2.6747 -1.0543 -8.6382 14 14 1.4749 1.0555 -9.9725 15 1 0.7219 2.2558 -9.5283 16 1 2.6817 1.4788 -10.7271 17 1 0.6097 0.2249 -10.8481 18 6 2.0400 -0.7213 1.2491 19 7 1.6525 0.0351 2.4423 20 6 1.9965 -0.4134 3.6659 21 8 2.6265 -1.4435 3.7790 22 6 1.5983 0.3651 4.8932 23 6 0.0735 0.4749 4.9551 24 6 2.2084 1.7667 4.8283 25 6 2.1082 -0.3563 6.1424 26 6 1.6907 0.3209 7.4584 27 6 1.4570 -1.0916 8.0196 28 6 1.2314 -1.5458 6.5678 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7994 -1.2057 33 1 1.6054 -1.7197 -1.2954 34 1 1.9882 0.9875 -2.3966 35 1 3.2116 -0.7048 -3.6406 36 1 1.6903 -1.6246 -3.7298 37 1 2.5383 -1.0626 -6.2254 38 1 2.9101 -1.3567 -9.5292 39 1 3.1264 -0.7996 1.2055 40 1 1.6055 -1.7199 1.2949 41 1 1.1489 0.8593 2.3518 42 1 -0.2198 0.9333 5.8995 43 1 -0.2804 1.0898 4.1275 44 1 -0.3656 -0.5200 4.8821 45 1 3.2946 1.6884 4.7843 46 1 1.8447 2.2804 3.9385 47 1 1.9207 2.3296 5.7163 48 1 3.1709 -0.5935 6.0913 49 1 0.7799 0.9138 7.3746 50 1 2.5015 0.8579 7.9510 51 1 2.3415 -1.5297 8.4818 52 1 0.5679 -1.1712 8.6452 53 1 1.6720 -2.5165 6.3406 54 1 0.1949 -1.4633 6.2406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753627712.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:39 Heat of formation + Delta-G solvation = -96.629040 kcal Electronic energy + Delta-G solvation = -29243.561948 eV Core-core repulsion = 25214.128201 eV Total energy + Delta-G solvation = -4029.433746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67801 -40.18614 -39.54407 -38.16669 -36.18709 -35.70526 -35.01556 -33.31992 -32.91945 -28.83902 -28.46322 -27.69310 -26.67730 -26.53881 -26.11190 -24.68987 -23.26221 -21.65424 -21.11798 -20.75596 -19.89992 -19.33458 -17.94910 -17.83926 -17.26725 -16.99085 -16.61034 -16.42532 -16.21590 -15.96360 -15.89046 -15.49988 -15.32576 -15.16360 -14.68211 -14.54835 -14.11261 -13.94562 -13.73486 -13.64609 -13.51106 -13.40136 -13.16849 -13.08580 -13.02259 -12.84711 -12.78332 -12.52679 -12.40565 -12.27524 -12.11430 -12.04736 -12.00189 -11.95479 -11.72017 -11.51147 -11.25407 -11.23947 -10.93676 -10.55235 -10.33823 -10.06192 -10.01537 -9.30459 -8.46831 -5.95669 1.36847 1.42195 1.56451 1.68837 2.05279 2.17331 2.30146 2.95035 3.20649 3.51909 3.55276 3.68391 3.71500 3.86317 3.93516 3.99339 4.03206 4.07237 4.15167 4.30007 4.33047 4.36847 4.47669 4.49687 4.57762 4.62549 4.69789 4.74827 4.81591 4.84452 4.85349 4.86885 4.96622 4.97167 4.99103 5.06551 5.08435 5.13055 5.18302 5.26953 5.29157 5.34808 5.41158 5.44252 5.46782 5.53897 5.67941 5.88322 6.09746 6.41666 6.57976 6.59894 7.12565 7.28599 7.56293 8.11252 8.70823 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.040668 B = 0.001453 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.343125 B =19270.306108 C =19536.635852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.067 3.933 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.131 3.869 19 N -0.716 5.716 20 C 0.517 3.483 21 O -0.584 6.584 22 C -0.067 4.067 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.090 4.090 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.144 4.144 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.412 0.588 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.077 0.923 53 H 0.042 0.958 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 2.256 32.222 32.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.368 5.368 20 C 0.304 3.696 21 O -0.463 6.463 22 C -0.070 4.070 23 C -0.201 4.201 24 C -0.196 4.196 25 C -0.109 4.109 26 C -0.162 4.162 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.096 0.904 53 H 0.061 0.939 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.655 1.822 32.169 32.330 hybrid contribution 1.108 0.036 -1.312 1.717 sum -1.547 1.857 30.857 30.952 Atomic orbital electron populations 1.21697 0.93783 1.01863 1.01908 1.21195 0.97341 1.00010 0.91983 0.89799 1.21966 0.98093 0.97814 0.88408 1.60027 1.64644 1.05924 1.00206 1.21523 0.99046 0.98049 0.88170 1.20868 0.83871 0.87619 0.85058 1.90486 1.45505 1.28331 1.86502 1.41948 1.50017 1.24383 1.04787 1.19721 1.34339 1.06998 0.85303 0.90240 1.26046 0.96434 0.97564 1.01226 1.69677 1.38988 1.22546 1.24987 0.84862 0.78219 0.77993 0.77210 1.19701 1.19611 1.19675 1.21208 0.99368 0.95177 0.83565 1.45952 1.57587 1.28066 1.05189 1.21168 0.77972 0.85010 0.85410 1.90673 1.41790 1.26532 1.87322 1.20743 0.98614 0.96364 0.91295 1.22041 0.91050 1.02542 1.04504 1.21855 1.00422 0.93100 1.04180 1.22336 0.99065 0.96601 0.92911 1.23015 1.02418 0.96371 0.94386 1.22788 1.02103 0.97092 0.95791 1.23070 1.00487 0.97455 0.97084 0.91625 0.92754 0.93193 0.94258 0.90483 0.83659 0.91715 0.88001 0.77016 0.91323 0.92357 0.92218 0.75082 0.89232 0.90680 0.92668 0.93281 0.90935 0.89420 0.91151 0.88066 0.90938 0.90740 0.90399 0.93907 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.95 71.98 0.64 -1.85 16 2 C -0.09 -1.52 2.57 -10.79 -0.03 -1.55 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.07 1.45 5.08 86.30 0.44 1.89 16 5 N -0.68 -20.14 5.58 -517.92 -2.89 -23.03 16 6 C 0.06 2.18 6.17 85.56 0.53 2.71 16 7 C 0.44 20.72 7.82 87.66 0.69 21.41 16 8 O -0.62 -34.10 15.78 -3.08 -0.05 -34.15 16 9 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 10 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 14 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.13 2.37 5.06 86.38 0.44 2.81 16 19 N -0.72 -11.07 5.08 -463.08 -2.35 -13.42 16 20 C 0.52 10.02 6.44 87.66 0.56 10.58 16 21 O -0.58 -16.64 15.80 -3.02 -0.05 -16.69 16 22 C -0.07 -0.84 0.53 -52.93 -0.03 -0.87 16 23 C -0.14 -1.21 7.31 71.98 0.53 -0.68 16 24 C -0.14 -1.24 8.20 71.98 0.59 -0.65 16 25 C -0.09 -1.31 2.44 -10.27 -0.03 -1.33 16 26 C -0.12 -1.14 6.62 31.12 0.21 -0.93 16 27 C -0.14 -1.54 8.08 31.12 0.25 -1.29 16 28 C -0.14 -2.17 7.18 31.12 0.22 -1.94 16 29 H 0.06 0.91 7.18 -2.39 -0.02 0.89 16 30 H 0.05 1.29 7.75 -2.39 -0.02 1.27 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.34 10.70 8.43 -89.69 -0.76 9.94 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 4.30 6.63 -92.70 -0.61 3.69 16 42 H 0.09 0.46 6.08 -2.39 -0.01 0.44 16 43 H 0.07 0.44 7.75 -2.39 -0.02 0.42 16 44 H 0.05 0.60 6.47 -2.39 -0.02 0.58 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 47 H 0.09 0.50 7.54 -2.38 -0.02 0.48 16 48 H 0.07 1.36 7.95 -2.39 -0.02 1.34 16 49 H 0.10 0.59 6.13 -2.38 -0.01 0.58 16 50 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.09 1.21 5.67 -2.38 -0.01 1.20 16 Total: -1.00 -72.21 423.46 0.45 -71.76 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.19 Total: 41.37 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.29 Total: 9.87 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -6.58 Total: -117.07 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.10 Total: -50.84 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.21 0.45 -71.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753627712.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.869 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds