Wall clock time and date at job start Sat Apr 11 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46998 * 2 1 4 4 C 1.53002 * 109.46812 * 119.99885 * 2 1 3 5 5 N 1.46903 * 109.47013 * 294.99878 * 4 2 1 6 6 C 1.46906 * 110.99881 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46883 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00177 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99424 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99751 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99990 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00316 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00335 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99775 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47433 * 89.99858 * 14 12 10 16 16 H 1.48505 * 109.47105 * 209.99852 * 14 12 10 17 17 H 1.48504 * 109.47075 * 329.99461 * 14 12 10 18 18 C 1.52994 * 109.47200 * 239.99889 * 2 1 3 19 19 N 1.46496 * 109.47302 * 64.99736 * 18 2 1 20 20 C 1.34783 * 119.99942 * 179.97438 * 19 18 2 21 21 O 1.21276 * 119.99944 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.99710 * 180.02562 * 20 19 18 23 23 C 1.53006 * 109.47166 * 60.00320 * 22 20 19 24 24 C 1.53004 * 109.47235 * 300.00519 * 22 20 19 25 25 C 1.52994 * 109.47070 * 180.02562 * 22 20 19 26 26 C 1.53782 * 113.61614 * 182.98244 * 25 22 20 27 27 C 1.53777 * 87.08321 * 139.98073 * 26 25 22 28 28 C 1.53780 * 113.61439 * 280.47824 * 25 22 20 29 29 H 1.09002 * 109.47259 * 60.00227 * 1 2 3 30 30 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47762 * 300.00006 * 1 2 3 32 32 H 1.08992 * 109.47607 * 55.00241 * 4 2 1 33 33 H 1.09003 * 109.46859 * 175.00516 * 4 2 1 34 34 H 1.00895 * 111.00315 * 303.95525 * 5 4 2 35 35 H 1.08998 * 109.46928 * 300.00559 * 6 5 4 36 36 H 1.09002 * 109.46812 * 59.99903 * 6 5 4 37 37 H 0.96999 * 120.00752 * 359.97438 * 9 7 6 38 38 H 0.96998 * 119.99919 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.47396 * 304.99523 * 18 2 1 40 40 H 1.09002 * 109.47135 * 185.00475 * 18 2 1 41 41 H 0.97002 * 120.00200 * 0.02562 * 19 18 2 42 42 H 1.09000 * 109.47138 * 173.34901 * 23 22 20 43 43 H 1.08999 * 109.47289 * 293.34670 * 23 22 20 44 44 H 1.08995 * 109.46886 * 53.34503 * 23 22 20 45 45 H 1.08997 * 109.46573 * 299.99791 * 24 22 20 46 46 H 1.08995 * 109.47256 * 60.00244 * 24 22 20 47 47 H 1.09005 * 109.46729 * 180.02562 * 24 22 20 48 48 H 1.09003 * 112.91029 * 51.72721 * 25 22 20 49 49 H 1.09001 * 113.61344 * 25.43196 * 26 25 22 50 50 H 1.09008 * 113.68838 * 254.54097 * 26 25 22 51 51 H 1.09000 * 113.61947 * 89.11518 * 27 26 25 52 52 H 1.08999 * 113.61414 * 220.01583 * 27 26 25 53 53 H 1.09001 * 113.61471 * 105.46883 * 28 25 22 54 54 H 1.09000 * 113.61625 * 334.56793 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1256 -0.6264 3.6673 7 6 1.7085 0.1788 4.8709 8 8 1.0786 1.2050 4.7254 9 7 2.0364 -0.2410 6.1089 10 6 1.6566 0.4912 7.2039 11 1 1.0942 1.4042 7.0745 12 6 1.9941 0.0583 8.4804 13 7 1.6304 0.7604 9.5300 14 14 2.9662 -1.5210 8.7043 15 1 4.4190 -1.2139 8.6937 16 1 2.6020 -2.1468 10.0010 17 1 2.6502 -2.4581 7.5965 18 6 2.0400 -0.7212 -1.2492 19 7 1.6524 0.0353 -2.4423 20 6 1.9965 -0.4133 -3.6659 21 8 2.6265 -1.4433 -3.7791 22 6 1.5982 0.3653 -4.8932 23 6 2.2084 1.7669 -4.8283 24 6 0.0734 0.4752 -4.9550 25 6 2.1081 -0.3560 -6.1424 26 6 1.8159 0.3970 -7.4510 27 6 3.2197 -0.0254 -7.9156 28 6 3.5996 -0.1136 -6.4280 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 1.9880 0.9873 2.3967 35 1 1.6920 -1.6245 3.7301 36 1 3.2126 -0.7037 3.6401 37 1 2.5406 -1.0615 6.2253 38 1 1.8664 0.4584 10.4210 39 1 1.6054 -1.7199 -1.2951 40 1 3.1263 -0.7995 -1.2055 41 1 1.1488 0.8593 -2.3518 42 1 2.0202 2.2889 -5.7665 43 1 1.7563 2.3223 -4.0066 44 1 3.2832 1.6881 -4.6655 45 1 -0.3612 -0.5233 -5.0012 46 1 -0.2902 0.9889 -4.0651 47 1 -0.2146 1.0380 -5.8430 48 1 1.8235 -1.4078 -6.1709 49 1 1.7049 1.4734 -7.3199 50 1 1.0105 -0.0432 -8.0391 51 1 3.2389 -0.9868 -8.4289 52 1 3.7537 0.7554 -8.4571 53 1 4.2342 -0.9671 -6.1893 54 1 3.9762 0.8231 -6.0173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753627713.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:42 Heat of formation + Delta-G solvation = -91.761955 kcal Electronic energy + Delta-G solvation = -29298.201471 eV Core-core repulsion = 25268.978777 eV Total energy + Delta-G solvation = -4029.222694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67731 -40.32330 -39.55050 -38.17673 -36.20902 -35.73238 -35.02423 -33.75440 -32.98331 -28.97177 -28.46203 -27.69861 -26.66499 -26.45926 -26.10513 -24.59481 -23.24956 -21.64661 -21.26157 -20.86684 -20.20665 -19.33390 -17.95153 -17.81742 -17.27047 -17.04502 -16.74497 -16.44227 -16.30490 -15.81262 -15.77152 -15.54935 -15.36274 -14.93355 -14.77492 -14.53257 -14.36901 -14.07675 -13.89566 -13.75364 -13.62577 -13.41067 -13.20608 -13.11495 -13.00006 -12.87321 -12.78584 -12.53104 -12.41571 -12.28258 -12.05494 -12.01692 -11.98224 -11.93519 -11.71246 -11.51224 -11.25699 -11.24215 -10.93897 -10.55659 -10.42108 -10.24771 -10.05714 -9.29952 -8.41389 -6.02218 1.30573 1.35270 1.44415 1.68869 1.96073 2.18036 2.22882 2.75872 3.15341 3.41753 3.54702 3.68197 3.71192 3.86676 3.93690 3.99173 4.03913 4.06295 4.14818 4.17758 4.30148 4.36883 4.43863 4.50507 4.54903 4.63604 4.69317 4.75254 4.82046 4.83945 4.84847 4.87053 4.96510 4.97821 4.98802 5.06060 5.08800 5.12692 5.18036 5.26905 5.29317 5.34548 5.43973 5.47202 5.52579 5.54081 5.67611 5.90440 6.04456 6.40226 6.57797 6.59913 6.88116 7.28513 7.40015 7.96411 8.76199 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.001522 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.045876 B =18388.588349 C =18751.348996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.083 0.917 4 C 0.067 3.933 5 N -0.680 5.680 6 C 0.061 3.939 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.592 5.592 10 C -0.330 4.330 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.131 3.869 19 N -0.716 5.716 20 C 0.517 3.483 21 O -0.583 6.583 22 C -0.067 4.067 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.090 4.090 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.144 4.144 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.345 0.655 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.412 0.588 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.077 0.923 53 H 0.043 0.957 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -3.538 -35.565 35.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.062 4.062 5 N -0.313 5.313 6 C -0.071 4.071 7 C 0.237 3.763 8 O -0.497 6.497 9 N -0.233 5.233 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.155 1.155 18 C 0.007 3.993 19 N -0.369 5.369 20 C 0.305 3.695 21 O -0.463 6.463 22 C -0.070 4.070 23 C -0.202 4.202 24 C -0.196 4.196 25 C -0.109 4.109 26 C -0.162 4.162 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.119 0.881 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.095 0.905 53 H 0.062 0.938 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.165 -3.834 -35.469 35.742 hybrid contribution 1.146 -0.298 1.146 1.648 sum 3.312 -4.132 -34.324 34.730 Atomic orbital electron populations 1.21699 0.93933 1.01871 1.01811 1.21203 0.97224 1.00045 0.92184 0.89912 1.21963 0.98278 0.97799 0.88137 1.60031 1.64845 1.06032 1.00381 1.21623 0.99755 0.98151 0.87561 1.20987 0.83072 0.87400 0.84859 1.90538 1.44512 1.28320 1.86372 1.42044 1.51756 1.24211 1.05336 1.19020 1.34722 1.06980 0.85163 0.92608 1.26096 0.98607 1.02704 0.93845 1.69802 1.47163 1.41237 0.99266 0.85375 0.78939 0.77629 0.79645 1.18172 1.20064 1.15516 1.21221 0.99431 0.95165 0.83503 1.45963 1.57573 1.28084 1.05242 1.21141 0.77986 0.84979 0.85406 1.90671 1.41739 1.26524 1.87322 1.20741 0.98478 0.96455 0.91364 1.22040 1.00628 0.93080 1.04414 1.21854 0.91045 1.02484 1.04172 1.22335 0.96522 0.98852 0.93162 1.23016 0.97118 1.01189 0.94916 1.22790 0.97501 1.01849 0.95661 1.23069 0.96155 1.01660 0.97221 0.91836 0.93094 0.92832 0.90197 0.93896 0.83648 0.87056 0.90579 0.77498 0.91158 0.92161 0.92222 0.75128 0.89283 0.90731 0.92684 0.93199 0.90951 0.89494 0.91065 0.88133 0.90921 0.90696 0.90454 0.93835 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.95 71.98 0.64 -1.73 16 2 C -0.09 -1.42 2.57 -10.80 -0.03 -1.45 16 3 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 4 C 0.07 1.30 5.07 86.30 0.44 1.74 16 5 N -0.68 -18.61 5.58 -517.91 -2.89 -21.50 16 6 C 0.06 1.82 6.17 85.56 0.53 2.35 16 7 C 0.45 19.98 7.82 87.66 0.69 20.67 16 8 O -0.61 -33.52 15.78 -3.05 -0.05 -33.57 16 9 N -0.59 -27.74 5.09 -306.99 -1.56 -29.31 16 10 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 11 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.93 -56.26 13.96 21.66 0.30 -55.96 16 14 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 18 C 0.13 2.18 5.06 86.38 0.44 2.62 16 19 N -0.72 -10.45 5.08 -463.07 -2.35 -12.81 16 20 C 0.52 9.61 6.44 87.66 0.56 10.18 16 21 O -0.58 -16.05 15.80 -3.02 -0.05 -16.10 16 22 C -0.07 -0.81 0.53 -52.93 -0.03 -0.84 16 23 C -0.14 -1.17 7.31 71.98 0.53 -0.65 16 24 C -0.14 -1.18 8.20 71.98 0.59 -0.59 16 25 C -0.09 -1.26 2.44 -10.27 -0.03 -1.28 16 26 C -0.13 -1.10 6.62 31.12 0.21 -0.89 16 27 C -0.14 -1.50 8.08 31.12 0.25 -1.25 16 28 C -0.14 -2.10 7.18 31.12 0.22 -1.88 16 29 H 0.06 0.85 7.18 -2.39 -0.02 0.83 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.34 10.03 8.43 -89.70 -0.76 9.27 16 35 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 38 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.41 4.04 6.63 -92.71 -0.61 3.43 16 42 H 0.09 0.44 6.08 -2.39 -0.01 0.43 16 43 H 0.07 0.42 7.75 -2.39 -0.02 0.40 16 44 H 0.05 0.58 6.47 -2.39 -0.02 0.56 16 45 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 0.45 7.56 -2.39 -0.02 0.43 16 47 H 0.09 0.47 7.54 -2.38 -0.02 0.45 16 48 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 49 H 0.10 0.57 6.13 -2.39 -0.01 0.55 16 50 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 53 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.09 1.17 5.68 -2.39 -0.01 1.16 16 Total: -1.00 -79.96 420.34 0.59 -79.37 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -1.05 Total: 40.99 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.34 Total: 8.26 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -6.50 Total: -119.57 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.10 Total: -49.67 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -79.96 0.59 -79.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753627713.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.389 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds