Wall clock time and date at job start Sat Apr 11 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47206 * 2 1 4 4 C 1.47013 * 111.00245 * 72.11283 * 3 2 1 5 5 C 1.53097 * 109.26304 * 182.39406 * 4 3 2 6 6 O 1.43017 * 109.25809 * 303.15152 * 5 4 3 7 7 C 1.43016 * 113.73427 * 58.66864 * 6 5 4 8 8 C 1.47008 * 111.00320 * 195.75153 * 3 2 1 9 9 H 1.08998 * 109.50850 * 297.58495 * 8 3 2 10 10 C 1.50701 * 109.50849 * 57.67240 * 8 3 2 11 11 O 1.21278 * 119.99902 * 23.60628 * 10 8 3 12 12 N 1.34783 * 119.99855 * 203.60471 * 10 8 3 13 13 C 1.45334 * 120.36778 * 359.97438 * 12 10 8 14 14 C 1.53442 * 108.41201 * 136.68035 * 13 12 10 15 15 C 1.52780 * 109.39556 * 282.28647 * 14 13 12 16 16 C 1.53955 * 109.77684 * 72.88331 * 15 14 13 17 17 C 1.52438 * 110.70162 * 44.37414 * 16 15 14 18 18 C 1.53801 * 109.40453 * 246.29595 * 17 16 15 19 19 H 1.09004 * 109.51948 * 317.93377 * 18 17 16 20 20 N 1.46497 * 109.52845 * 197.73864 * 18 17 16 21 21 C 1.36939 * 119.99774 * 84.99703 * 20 18 17 22 22 H 1.07992 * 120.00119 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99445 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00270 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99419 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47334 * 90.00216 * 25 23 21 27 27 H 1.48504 * 109.46604 * 209.99959 * 25 23 21 28 28 H 1.48501 * 109.47376 * 329.99463 * 25 23 21 29 29 C 1.46964 * 120.35974 * 179.97438 * 12 10 8 30 30 H 1.09006 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46651 * 300.00014 * 1 2 3 32 32 H 1.09000 * 109.47005 * 59.99551 * 1 2 3 33 33 H 1.09007 * 109.47199 * 240.00170 * 2 1 3 34 34 H 1.09001 * 109.47494 * 119.99858 * 2 1 3 35 35 H 1.08997 * 109.50977 * 302.33108 * 4 3 2 36 36 H 1.09007 * 109.50497 * 62.41679 * 4 3 2 37 37 H 1.08996 * 109.50544 * 63.08650 * 5 4 3 38 38 H 1.08996 * 109.50975 * 183.17470 * 5 4 3 39 39 H 1.09009 * 109.50302 * 181.39361 * 7 6 5 40 40 H 1.08997 * 109.51137 * 61.26518 * 7 6 5 41 41 H 1.09007 * 109.66920 * 256.41158 * 13 12 10 42 42 H 1.08998 * 109.67546 * 16.94653 * 13 12 10 43 43 H 1.08996 * 109.48720 * 42.24984 * 14 13 12 44 44 H 1.09000 * 109.48504 * 162.28361 * 14 13 12 45 45 H 1.09001 * 109.38428 * 312.80251 * 15 14 13 46 46 H 1.09008 * 109.42587 * 192.98731 * 15 14 13 47 47 H 1.08998 * 109.23010 * 284.06803 * 16 15 14 48 48 H 1.09000 * 109.22589 * 164.67088 * 16 15 14 49 49 H 1.09001 * 109.48674 * 6.27332 * 17 16 15 50 50 H 1.09003 * 109.48503 * 126.31465 * 17 16 15 51 51 H 0.97003 * 120.00123 * 265.00120 * 20 18 17 52 52 H 0.97004 * 120.00140 * 179.97438 * 24 23 21 53 53 H 1.09004 * 109.52674 * 171.73315 * 29 12 10 54 54 H 1.08994 * 109.59369 * 51.54788 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7979 2.0222 1.3061 5 6 2.2668 3.4783 1.2438 6 8 3.6412 3.5149 0.8500 7 6 3.8931 2.9033 -0.4181 8 6 3.4406 1.4414 -0.3726 9 1 4.0322 0.8995 0.3653 10 6 3.6305 0.8134 -1.7293 11 8 2.7004 0.7535 -2.5052 12 7 4.8340 0.3184 -2.0802 13 6 5.9542 0.3866 -1.1568 14 6 6.6896 -0.9598 -1.1867 15 6 5.9065 -1.9839 -0.3669 16 6 4.6356 -2.3999 -1.1298 17 6 4.9491 -2.6570 -2.5992 18 6 4.2430 -1.5999 -3.4649 19 1 3.2333 -1.4359 -3.0883 20 7 4.1797 -2.0659 -4.8524 21 6 3.1584 -2.8852 -5.2535 22 1 2.3995 -3.1876 -4.5471 23 6 3.0988 -3.3272 -6.5680 24 7 4.0235 -2.9583 -7.4290 25 14 1.7053 -4.4443 -7.1154 26 1 0.5713 -3.6187 -7.6029 27 1 2.1805 -5.3283 -8.2100 28 1 1.2565 -5.2742 -5.9686 29 6 5.0280 -0.2962 -3.4010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7360 1.9920 1.5503 36 1 2.3627 1.4898 2.0715 37 1 1.6652 4.0236 0.5166 38 1 2.1565 3.9386 2.2256 39 1 4.9598 2.9476 -0.6379 40 1 3.3388 3.4318 -1.1936 41 1 6.6334 1.1827 -1.4620 42 1 5.5877 0.5824 -0.1491 43 1 6.7726 -1.3059 -2.2169 44 1 7.6863 -0.8392 -0.7622 45 1 5.6270 -1.5437 0.5903 46 1 6.5289 -2.8618 -0.1934 47 1 3.8950 -1.6037 -1.0548 48 1 4.2312 -3.3091 -0.6847 49 1 6.0258 -2.5962 -2.7574 50 1 4.5961 -3.6499 -2.8780 51 1 4.8612 -1.7940 -5.4869 52 1 3.9820 -3.2674 -8.3475 53 1 6.0874 -0.5007 -3.5557 54 1 4.6708 0.3822 -4.1758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088338708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:21 Heat of formation + Delta-G solvation = -66.283139 kcal Electronic energy + Delta-G solvation = -33181.182218 eV Core-core repulsion = 29153.064369 eV Total energy + Delta-G solvation = -4028.117849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08837 -40.32396 -38.67257 -37.04041 -36.70726 -35.12511 -34.01424 -32.77076 -31.86563 -31.28227 -29.19166 -27.70368 -27.24114 -26.15550 -25.27654 -23.95555 -23.09440 -22.52132 -21.67659 -20.80835 -19.99287 -19.15453 -18.44025 -17.67954 -17.54277 -17.06436 -16.92106 -16.29233 -16.10034 -15.97853 -15.85247 -15.35658 -15.31637 -15.19810 -15.08474 -14.83019 -14.68251 -14.36626 -13.89419 -13.83983 -13.57724 -13.21516 -13.06607 -12.99211 -12.93516 -12.82796 -12.77143 -12.49725 -12.39205 -12.25188 -12.19061 -11.96397 -11.88482 -11.79999 -11.63429 -11.58031 -11.45288 -11.22548 -11.01190 -10.87431 -10.49183 -9.51942 -9.40083 -8.99997 -7.96954 -5.24547 1.41335 1.44334 1.51645 1.55723 1.85869 2.53510 2.61820 2.86381 3.35314 3.44535 3.66606 3.69974 3.86432 3.89432 3.96228 4.02066 4.03227 4.11544 4.16245 4.17814 4.22094 4.33167 4.37365 4.42375 4.47048 4.49571 4.55370 4.60203 4.66029 4.68480 4.71748 4.77187 4.84872 4.91784 4.93453 4.93905 5.01380 5.04742 5.14752 5.20073 5.26696 5.36752 5.40867 5.43142 5.47873 5.56944 5.70018 5.78252 5.94704 6.02220 6.26111 6.48774 7.22837 7.31664 8.06276 8.30961 9.26295 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.003788 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.168243 B = 7390.317284 C = 8297.545580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 N -0.535 5.535 4 C 0.019 3.981 5 C 0.058 3.942 6 O -0.383 6.383 7 C 0.082 3.918 8 C 0.041 3.959 9 H 0.089 0.911 10 C 0.512 3.488 11 O -0.558 6.558 12 N -0.594 5.594 13 C 0.096 3.904 14 C -0.148 4.148 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.168 3.832 19 H 0.026 0.974 20 N -0.733 5.733 21 C -0.234 4.234 22 H 0.060 0.940 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.290 1.290 27 H -0.289 1.289 28 H -0.273 1.273 29 C 0.126 3.874 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.074 0.926 50 H 0.028 0.972 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.104 0.896 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 11.494 24.972 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 N -0.262 5.262 4 C -0.108 4.108 5 C -0.019 4.019 6 O -0.301 6.301 7 C 0.004 3.996 8 C -0.071 4.071 9 H 0.106 0.894 10 C 0.299 3.701 11 O -0.435 6.435 12 N -0.328 5.328 13 C -0.026 4.026 14 C -0.185 4.185 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.168 4.168 18 C 0.058 3.942 19 H 0.044 0.956 20 N -0.373 5.373 21 C -0.366 4.366 22 H 0.078 0.922 23 C -0.263 4.263 24 N -0.617 5.617 25 Si 0.796 3.204 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.198 1.198 29 C 0.002 3.998 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.093 0.907 50 H 0.047 0.953 51 H 0.205 0.795 52 H 0.061 0.939 53 H 0.122 0.878 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.713 11.716 24.345 27.271 hybrid contribution -0.640 -1.502 -1.025 1.927 sum 3.073 10.214 23.320 25.644 Atomic orbital electron populations 1.21654 0.93740 1.01831 1.02182 1.22093 0.97426 0.88009 1.00054 1.61935 1.15035 1.18691 1.30525 1.22970 1.03512 0.95875 0.88438 1.22915 0.81727 0.94897 1.02352 1.87997 1.27272 1.78667 1.36157 1.22516 1.02495 0.88218 0.86353 1.22332 0.91483 0.99402 0.93904 0.89372 1.20645 0.82158 0.78264 0.89015 1.90774 1.41558 1.57462 1.53659 1.47839 1.10774 1.57905 1.16254 1.22092 0.87745 0.99036 0.93723 1.22300 1.00034 0.94121 1.02059 1.21688 0.95266 0.99340 0.98137 1.21631 0.98909 0.99977 0.94565 1.22306 1.00895 0.98594 0.95011 1.20741 0.96564 0.92244 0.84612 0.95623 1.42420 1.29895 1.57928 1.07008 1.19417 1.02670 1.20463 0.94009 0.92159 1.25446 1.01255 1.03289 0.96330 1.69789 1.36956 1.50982 1.03953 0.85242 0.78941 0.78530 0.77709 1.21786 1.21468 1.19788 1.21497 1.01066 0.93318 0.83894 0.91974 0.90641 0.93869 0.93353 0.93559 0.87769 0.92858 0.92676 0.85240 0.85800 0.93295 0.88969 0.88245 0.91146 0.87730 0.90641 0.91192 0.93869 0.93375 0.90728 0.95312 0.79455 0.93949 0.87769 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.96 71.98 0.72 -2.47 16 2 C 0.05 1.33 5.32 86.30 0.46 1.79 16 3 N -0.54 -12.80 4.22 -874.40 -3.69 -16.50 16 4 C 0.02 0.31 5.46 86.31 0.47 0.78 16 5 C 0.06 0.85 7.01 72.01 0.50 1.36 16 6 O -0.38 -7.04 10.83 -148.98 -1.61 -8.65 16 7 C 0.08 1.62 6.24 72.02 0.45 2.07 16 8 C 0.04 0.92 1.60 44.18 0.07 1.00 16 9 H 0.09 1.65 6.16 -2.39 -0.01 1.64 16 10 C 0.51 15.70 4.23 87.66 0.37 16.07 16 11 O -0.56 -23.67 14.02 -3.02 -0.04 -23.71 16 12 N -0.59 -15.80 1.68 -823.99 -1.39 -17.18 16 13 C 0.10 1.56 5.44 86.75 0.47 2.03 16 14 C -0.15 -2.42 5.45 30.67 0.17 -2.25 16 15 C -0.11 -1.98 5.74 30.84 0.18 -1.80 16 16 C -0.11 -3.14 5.40 30.73 0.17 -2.98 16 17 C -0.13 -4.61 5.09 30.68 0.16 -4.45 16 18 C 0.17 7.13 2.39 45.03 0.11 7.24 16 19 H 0.03 1.28 6.14 -2.38 -0.01 1.26 16 20 N -0.73 -39.14 5.13 -322.74 -1.66 -40.80 16 21 C -0.23 -13.90 9.88 84.03 0.83 -13.07 16 22 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 24 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 25 Si 0.97 48.65 29.55 68.60 2.03 50.68 16 26 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 29 C 0.13 4.32 4.64 86.06 0.40 4.72 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.33 6.73 -2.39 -0.02 1.32 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.65 5.39 -2.38 -0.01 1.64 16 34 H 0.05 1.01 8.05 -2.39 -0.02 0.99 16 35 H 0.10 1.41 6.63 -2.39 -0.02 1.40 16 36 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.85 7.71 -2.38 -0.02 1.83 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.10 1.27 5.18 -2.39 -0.01 1.26 16 43 H 0.07 1.50 3.35 -2.39 -0.01 1.49 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.11 7.87 -2.39 -0.02 1.10 16 46 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.04 1.32 4.95 -2.39 -0.01 1.31 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 49 H 0.07 2.41 5.47 -2.39 -0.01 2.40 16 50 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 51 H 0.37 20.84 7.79 -92.71 -0.72 20.12 16 52 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 53 H 0.10 3.04 6.07 -2.39 -0.01 3.03 16 54 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -77.37 390.40 0.09 -77.28 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.18 Total: 33.14 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.99 Total: 6.23 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -6.45 Total: -134.98 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.66 Total: -32.36 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -77.37 0.09 -77.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088338708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.000 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds