Wall clock time and date at job start Sat Apr 11 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47046 * 2 1 4 4 C 1.46894 * 110.99899 * 297.56139 * 3 2 1 5 5 C 1.52999 * 109.47037 * 288.26766 * 4 3 2 6 6 C 1.46906 * 110.99563 * 61.50996 * 3 2 1 7 7 C 1.50702 * 109.46938 * 66.05180 * 6 3 2 8 8 O 1.21281 * 120.00090 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99645 * 179.97438 * 7 6 3 10 10 C 1.47160 * 121.06401 * 359.97438 * 9 7 6 11 11 C 1.53277 * 108.54257 * 128.86361 * 10 9 7 12 12 H 1.09001 * 109.51481 * 292.97175 * 11 10 9 13 13 C 1.53003 * 109.55315 * 172.84366 * 11 10 9 14 14 O 1.43104 * 109.22835 * 52.89297 * 11 10 9 15 15 C 1.42065 * 114.33199 * 298.83459 * 14 11 10 16 16 C 1.54511 * 110.34000 * 298.05328 * 15 14 11 17 17 C 1.55025 * 101.51625 * 276.06279 * 16 15 14 18 18 N 1.47477 * 104.89953 * 323.61725 * 17 16 15 19 19 C 1.36938 * 125.66212 * 203.76109 * 18 17 16 20 20 H 1.08005 * 120.00043 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99782 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00291 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99694 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47212 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46871 * 120.00338 * 23 21 19 26 26 H 1.48500 * 109.47002 * 240.00203 * 23 21 19 27 27 C 1.47190 * 108.67788 * 24.02559 * 18 17 16 28 28 C 1.47302 * 121.05535 * 179.97438 * 9 7 6 29 29 H 1.08999 * 109.47099 * 301.26441 * 1 2 3 30 30 H 1.09000 * 109.47203 * 61.27297 * 1 2 3 31 31 H 1.09007 * 109.47014 * 181.26971 * 1 2 3 32 32 H 1.08999 * 109.47403 * 240.00251 * 2 1 3 33 33 H 1.08998 * 109.47244 * 119.99865 * 2 1 3 34 34 H 1.09001 * 109.47591 * 48.26961 * 4 3 2 35 35 H 1.09006 * 109.47296 * 168.26981 * 4 3 2 36 36 H 1.08998 * 109.46985 * 59.87961 * 5 4 3 37 37 H 1.08998 * 109.47114 * 179.88139 * 5 4 3 38 38 H 1.09004 * 109.47198 * 299.87876 * 5 4 3 39 39 H 1.08993 * 109.47456 * 306.04667 * 6 3 2 40 40 H 1.09007 * 109.46792 * 186.04380 * 6 3 2 41 41 H 1.08998 * 109.61999 * 9.14865 * 10 9 7 42 42 H 1.08998 * 109.78211 * 248.67824 * 10 9 7 43 43 H 1.09001 * 109.46837 * 300.22302 * 13 11 10 44 44 H 1.08997 * 109.47026 * 60.22597 * 13 11 10 45 45 H 1.09001 * 109.46723 * 180.22709 * 13 11 10 46 46 H 1.08994 * 111.02123 * 158.00022 * 16 15 14 47 47 H 1.08998 * 111.04574 * 34.13248 * 16 15 14 48 48 H 1.09008 * 110.34946 * 204.76235 * 17 16 15 49 49 H 1.08999 * 110.35833 * 82.47654 * 17 16 15 50 50 H 0.97001 * 120.00265 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.91323 * 117.85606 * 27 18 17 52 52 H 1.09000 * 109.90428 * 239.12788 * 27 18 17 53 53 H 1.09001 * 109.67851 * 109.67914 * 28 9 7 54 54 H 1.08996 * 109.68108 * 349.13399 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5969 2.0928 -1.2158 5 6 2.3836 1.5608 -2.4153 6 6 1.5783 2.0993 1.2054 7 6 2.2310 1.4884 2.4186 8 8 2.9888 0.5500 2.2916 9 7 1.9725 1.9848 3.6447 10 6 1.0574 3.1230 3.8257 11 6 0.0222 2.7512 4.8931 12 1 -0.6187 1.9539 4.5166 13 6 -0.8302 3.9767 5.2286 14 8 0.7000 2.3033 6.0712 15 6 1.5050 1.1485 5.8800 16 6 0.6316 -0.0486 5.4421 17 6 0.1229 -0.5766 6.8080 18 7 1.2558 -0.3881 7.7332 19 6 1.4665 -1.0891 8.8905 20 1 2.3305 -0.8746 9.5021 21 6 0.5697 -2.0754 9.2776 22 7 -0.4829 -2.3372 8.5320 23 14 0.8568 -3.0311 10.8568 24 1 2.1011 -2.5489 11.5080 25 1 -0.2927 -2.8273 11.7746 26 1 0.9897 -4.4766 10.5433 27 6 2.1190 0.6828 7.2094 28 6 2.5971 1.4053 4.8463 29 1 -0.3633 0.5333 0.8784 30 1 -0.3633 0.4939 -0.9012 31 1 -0.3633 -1.0275 0.0228 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5315 1.9303 -1.3790 35 1 1.7881 3.1597 -1.1002 36 1 2.1941 0.4935 -2.5296 37 1 2.0684 2.0845 -3.3177 38 1 3.4489 1.7253 -2.2531 39 1 0.4951 2.0216 1.2977 40 1 1.8622 3.1491 1.1301 41 1 0.5516 3.3391 2.8847 42 1 1.6185 3.9996 4.1494 43 1 -0.1884 4.7740 5.6034 44 1 -1.3461 4.3172 4.3309 45 1 -1.5631 3.7118 5.9906 46 1 1.2297 -0.8022 4.9298 47 1 -0.1981 0.2805 4.8165 48 1 -0.1344 -1.6333 6.7339 49 1 -0.7388 0.0018 7.1410 50 1 -1.1098 -3.0261 8.8027 51 1 2.1500 1.5131 7.9149 52 1 3.1249 0.2989 7.0394 53 1 3.3299 2.1030 5.2519 54 1 3.0871 0.4663 4.5888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131694521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:00 Heat of formation + Delta-G solvation = -49.284264 kcal Electronic energy + Delta-G solvation = -32250.645097 eV Core-core repulsion = 28223.264374 eV Total energy + Delta-G solvation = -4027.380723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90533 -40.42933 -38.54547 -37.92523 -35.79728 -34.80389 -32.96829 -32.32291 -31.61307 -30.98716 -30.00038 -28.03621 -27.44990 -26.61591 -25.18121 -24.61838 -23.22581 -21.98468 -21.38145 -20.71179 -19.94234 -19.01892 -18.26931 -17.93623 -17.33077 -17.04820 -16.87997 -16.57432 -16.28155 -15.80222 -15.71560 -15.43762 -14.99914 -14.96379 -14.76528 -14.30255 -14.12896 -13.92223 -13.83925 -13.68476 -13.58673 -13.13157 -13.06821 -13.04054 -12.96144 -12.91858 -12.83763 -12.76841 -12.70327 -12.33884 -12.25429 -12.23828 -11.98054 -11.96962 -11.90259 -11.60241 -11.49756 -11.37284 -10.90121 -10.78363 -10.70536 -9.52798 -9.18035 -8.94601 -7.80373 -5.25399 1.45229 1.46863 1.57361 1.60081 1.77024 2.45044 2.61546 2.96480 3.30213 3.41596 3.53815 3.58192 3.79070 3.87071 3.94635 3.99705 4.05368 4.10973 4.20555 4.24176 4.32472 4.37537 4.38989 4.44674 4.45385 4.48755 4.57439 4.61977 4.70749 4.71617 4.73563 4.77680 4.83183 4.86140 4.94339 5.00440 5.05960 5.10692 5.11615 5.17768 5.23081 5.29681 5.36189 5.42603 5.46579 5.53198 5.71643 5.97654 6.16230 6.23712 6.34201 6.39703 7.06226 7.17445 7.72249 8.37021 9.22575 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002965 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.176890 B = 9440.679322 C =10176.198897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.537 5.537 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.039 3.961 7 C 0.512 3.488 8 O -0.564 6.564 9 N -0.614 5.614 10 C 0.082 3.918 11 C 0.057 3.943 12 H 0.054 0.946 13 C -0.135 4.135 14 O -0.374 6.374 15 C 0.114 3.886 16 C -0.145 4.145 17 C 0.169 3.831 18 N -0.623 5.623 19 C -0.238 4.238 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.146 3.854 28 C 0.110 3.890 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.070 0.930 49 H -0.016 1.016 50 H 0.247 0.753 51 H 0.034 0.966 52 H 0.048 0.952 53 H 0.086 0.914 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 16.329 -21.299 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.085 4.085 3 N -0.262 5.262 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.091 4.091 7 C 0.302 3.698 8 O -0.442 6.442 9 N -0.348 5.348 10 C -0.040 4.040 11 C 0.000 4.000 12 H 0.072 0.928 13 C -0.193 4.193 14 O -0.294 6.294 15 C 0.073 3.927 16 C -0.184 4.184 17 C 0.044 3.956 18 N -0.350 5.350 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.812 3.188 24 H -0.189 1.189 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.021 3.979 28 C -0.014 4.014 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.002 0.998 50 H 0.057 0.943 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.104 0.896 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.863 15.777 -21.096 26.357 hybrid contribution -0.898 -1.187 1.142 1.876 sum -0.035 14.590 -19.954 24.719 Atomic orbital electron populations 1.22377 0.97225 1.02787 1.02175 1.22212 0.93326 0.90162 1.02784 1.61907 1.60427 1.02349 1.01485 1.22259 0.98371 0.98752 0.88751 1.21747 1.00438 1.01011 0.97073 1.22111 0.99250 1.00077 0.87701 1.21217 0.81322 0.82787 0.84508 1.90666 1.38063 1.29668 1.85820 1.48271 1.46746 1.34256 1.05520 1.22703 0.91444 0.88402 1.01412 1.22821 0.93436 0.97915 0.85871 0.92822 1.21727 0.98967 0.94988 1.03584 1.87884 1.63111 1.43741 1.34651 1.21912 0.90695 0.85467 0.94611 1.23238 0.99665 0.97475 0.97988 1.21555 0.88084 1.00006 0.85974 1.44807 1.25857 1.39882 1.24428 1.19525 1.07058 1.12215 0.97866 0.89780 1.25691 0.97010 1.00829 1.02615 1.70075 1.15058 1.35374 1.39566 0.84917 0.77537 0.77801 0.78509 1.18903 1.21845 1.21754 1.21232 0.93689 0.90621 0.92372 1.21833 0.94613 1.00361 0.84587 0.92971 0.90675 0.92141 0.90376 0.92185 0.93004 0.89280 0.93402 0.90535 0.93067 0.89627 0.85072 0.85475 0.88558 0.90879 0.87459 0.93116 0.92407 0.90520 0.91236 0.99781 0.94330 0.94813 0.93424 0.89626 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 9.28 71.98 0.67 -2.54 16 2 C 0.04 0.93 5.57 86.30 0.48 1.41 16 3 N -0.54 -10.23 4.41 -900.78 -3.97 -14.20 16 4 C 0.05 0.56 5.55 86.30 0.48 1.04 16 5 C -0.15 -1.81 9.96 71.98 0.72 -1.09 16 6 C 0.04 0.65 3.60 85.56 0.31 0.96 16 7 C 0.51 13.30 7.43 87.66 0.65 13.95 16 8 O -0.56 -19.94 13.80 -3.03 -0.04 -19.98 16 9 N -0.61 -15.10 2.91 -818.41 -2.38 -17.49 16 10 C 0.08 1.39 5.82 86.35 0.50 1.89 16 11 C 0.06 1.33 3.17 30.69 0.10 1.42 16 12 H 0.05 1.37 6.13 -2.39 -0.01 1.35 16 13 C -0.14 -2.27 9.57 71.98 0.69 -1.58 16 14 O -0.37 -12.71 9.87 -148.97 -1.47 -14.17 16 15 C 0.11 4.18 0.83 -10.21 -0.01 4.17 16 16 C -0.15 -5.96 5.91 31.80 0.19 -5.78 16 17 C 0.17 8.93 5.88 86.89 0.51 9.44 16 18 N -0.62 -34.00 3.40 -692.49 -2.36 -36.36 16 19 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 20 H 0.08 4.67 7.83 -2.91 -0.02 4.64 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 22 N -0.95 -58.63 10.10 21.65 0.22 -58.41 16 23 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.15 6.45 6.61 86.47 0.57 7.02 16 28 C 0.11 3.40 5.17 86.08 0.44 3.84 16 29 H 0.05 0.91 6.24 -2.39 -0.01 0.90 16 30 H 0.07 1.00 6.29 -2.39 -0.02 0.98 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 1.60 6.60 -2.39 -0.02 1.58 16 33 H 0.06 1.77 5.86 -2.39 -0.01 1.75 16 34 H 0.05 0.54 5.89 -2.39 -0.01 0.53 16 35 H 0.09 0.81 7.82 -2.38 -0.02 0.79 16 36 H 0.05 0.67 6.71 -2.39 -0.02 0.65 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 1.13 5.55 -2.39 -0.01 1.12 16 40 H 0.13 1.39 7.73 -2.38 -0.02 1.37 16 41 H 0.13 1.14 6.05 -2.39 -0.01 1.12 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 2.48 7.86 -2.39 -0.02 2.47 16 47 H 0.08 2.84 5.98 -2.39 -0.01 2.82 16 48 H 0.07 4.17 5.90 -2.38 -0.01 4.15 16 49 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 51 H 0.03 1.50 8.06 -2.39 -0.02 1.48 16 52 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 53 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 54 H 0.08 2.89 6.89 -2.39 -0.02 2.87 16 Total: -1.00 -77.08 398.24 0.54 -76.55 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.88 Total: 17.51 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 7.63 Total: 17.55 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -8.49 Total: -126.46 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.51 Total: -34.16 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.08 0.54 -76.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131694521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.264 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds